[INFO] cloning repository https://github.com/sebschmi/genome-graph-rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sebschmi/genome-graph-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsebschmi%2Fgenome-graph-rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsebschmi%2Fgenome-graph-rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 42006903b6c78e72dea2f45612de79127bf1b1a7 [INFO] checking sebschmi/genome-graph-rs against master#2e6fc425411280c658d852813de01c5157255088 for pr-128013 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsebschmi%2Fgenome-graph-rs" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/sebschmi/genome-graph-rs on toolchain 2e6fc425411280c658d852813de01c5157255088 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/sebschmi/genome-graph-rs [INFO] finished tweaking git repo https://github.com/sebschmi/genome-graph-rs [INFO] tweaked toml for git repo https://github.com/sebschmi/genome-graph-rs written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 114 packages to latest compatible versions [INFO] [stderr] Adding addr2line v0.22.0 (latest: v0.24.1) [INFO] [stderr] Adding bio v1.6.0 (latest: v2.0.1) [INFO] [stderr] Adding bit-set v0.5.3 (latest: v0.8.0) [INFO] [stderr] Adding bit-vec v0.6.3 (latest: v0.8.0) [INFO] [stderr] Adding fixedbitset v0.4.2 (latest: v0.5.7) [INFO] [stderr] Adding gimli v0.29.0 (latest: v0.31.0) [INFO] [stderr] Adding heck v0.4.1 (latest: v0.5.0) [INFO] [stderr] Adding itertools v0.11.0 (latest: v0.13.0) [INFO] [stderr] Adding multimap v0.9.1 (latest: v0.10.0) [INFO] [stderr] Adding nalgebra v0.29.0 (latest: v0.33.0) [INFO] [stderr] Adding nalgebra-macros v0.1.0 (latest: v0.2.2) [INFO] [stderr] Adding ordered-float v3.9.2 (latest: v4.2.1) [INFO] [stderr] Adding radium v0.7.0 (latest: v1.1.0) [INFO] [stderr] Adding rustc_version v0.1.7 (latest: v0.4.0) [INFO] [stderr] Adding semver v0.1.20 (latest: v1.0.23) [INFO] [stderr] Adding simba v0.6.0 (latest: v0.9.0) [INFO] [stderr] Adding statrs v0.16.1 (latest: v0.17.1) [INFO] [stderr] Adding strum v0.25.0 (latest: v0.26.3) [INFO] [stderr] Adding strum_macros v0.25.3 (latest: v0.26.4) [INFO] [stderr] Adding syn v1.0.109 (latest: v2.0.72) [INFO] [stderr] Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.1+wasi-0.2.0) [INFO] [stderr] Adding wyz v0.5.1 (latest: v0.6.1) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded traitgraph-algo v8.1.0 [INFO] [stderr] Downloaded compact-genome v2.1.1 [INFO] [stderr] Downloaded traitsequence v2.0.0 [INFO] [stderr] Downloaded traitgraph v5.0.0 [INFO] [stderr] Downloaded disjoint-sets v0.4.2 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded bio-types v1.0.3 [INFO] [stderr] Downloaded bigraph v5.0.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bitvector v0.1.5 [INFO] [stderr] Downloaded bio v1.6.0 [INFO] [stderr] Downloaded multimap v0.9.1 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded statrs v0.16.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1739a21b74c80128f138336ed44c02b05a375b19a4facdb2d6393fef0be694b7 [INFO] running `Command { std: "docker" "start" "-a" "1739a21b74c80128f138336ed44c02b05a375b19a4facdb2d6393fef0be694b7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1739a21b74c80128f138336ed44c02b05a375b19a4facdb2d6393fef0be694b7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1739a21b74c80128f138336ed44c02b05a375b19a4facdb2d6393fef0be694b7", kill_on_drop: false }` [INFO] [stdout] 1739a21b74c80128f138336ed44c02b05a375b19a4facdb2d6393fef0be694b7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 41b6d28b62cd0aeaba62961fbb755e71c64c06894c8e2b3a2f6051329e971391 [INFO] running `Command { std: "docker" "start" "-a" "41b6d28b62cd0aeaba62961fbb755e71c64c06894c8e2b3a2f6051329e971391", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling autocfg v1.3.0 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling version_check v0.9.5 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Checking once_cell v1.19.0 [INFO] [stderr] Checking allocator-api2 v0.2.18 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling radium v0.7.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling serde v1.0.204 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Checking bytemuck v1.16.1 [INFO] [stderr] Checking equivalent v1.0.1 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Checking tap v1.0.1 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Checking wyz v0.5.1 [INFO] [stderr] Compiling syn v2.0.72 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking safe_arch v0.7.2 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking funty v2.0.0 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Compiling thiserror v1.0.63 [INFO] [stderr] Checking indexmap v2.2.6 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking bitvec v1.0.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking wide v0.7.26 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking regex-syntax v0.8.4 [INFO] [stderr] Compiling cc v1.1.6 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking traitsequence v2.0.0 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking gimli v0.29.0 [INFO] [stderr] Compiling anyhow v1.0.86 [INFO] [stderr] Compiling ref-cast v1.0.23 [INFO] [stderr] Compiling backtrace v0.3.73 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Checking regex-automata v0.4.7 [INFO] [stderr] Checking miniz_oxide v0.7.4 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking traitgraph v5.0.0 [INFO] [stderr] Compiling serde_derive v1.0.204 [INFO] [stderr] Compiling thiserror-impl v1.0.63 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling ref-cast-impl v1.0.23 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking addr2line v0.22.0 [INFO] [stderr] Checking object v0.36.2 [INFO] [stderr] Compiling error-chain v0.12.4 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Checking rustc-demangle v0.1.24 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking regex v1.10.5 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Checking ryu v1.0.18 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Checking traitgraph-algo v8.1.0 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking bitvector v0.1.5 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking bigraph v5.0.0 [INFO] [stderr] Checking compact-genome v2.1.1 [INFO] [stderr] Checking bio-types v1.0.3 [INFO] [stderr] Checking log v0.4.22 [INFO] [stderr] Checking disjoint-sets v0.4.2 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking statrs v0.16.1 [INFO] [stderr] Checking bio v1.6.0 [INFO] [stderr] Checking genome-graph v8.0.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition name: `traitgraph_algo` [INFO] [stdout] --> src/io/gfa/mod.rs:17:7 [INFO] [stdout] | [INFO] [stdout] 17 | #[cfg(traitgraph_algo)] [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: expected names are: `clippy`, `debug_assertions`, `doc`, `docsrs`, `doctest`, `feature`, `miri`, `overflow_checks`, `panic`, `proc_macro`, `relocation_model`, `rustfmt`, `sanitize`, `sanitizer_cfi_generalize_pointers`, `sanitizer_cfi_normalize_integers`, `target_abi`, `target_arch`, `target_endian`, `target_env`, `target_family`, `target_feature`, `target_has_atomic`, `target_has_atomic_equal_alignment`, `target_has_atomic_load_store`, `target_os`, `target_pointer_width`, `target_thread_local`, `target_vendor`, `test`, `ub_checks`, `unix`, and `windows` [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(traitgraph_algo)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(traitgraph_algo)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `traitgraph_algo` [INFO] [stdout] --> src/io/gfa/mod.rs:61:7 [INFO] [stdout] | [INFO] [stdout] 61 | #[cfg(traitgraph_algo)] [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(traitgraph_algo)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(traitgraph_algo)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `traitgraph_algo` [INFO] [stdout] --> src/io/gfa/mod.rs:17:7 [INFO] [stdout] | [INFO] [stdout] 17 | #[cfg(traitgraph_algo)] [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: expected names are: `clippy`, `debug_assertions`, `doc`, `docsrs`, `doctest`, `feature`, `miri`, `overflow_checks`, `panic`, `proc_macro`, `relocation_model`, `rustfmt`, `sanitize`, `sanitizer_cfi_generalize_pointers`, `sanitizer_cfi_normalize_integers`, `target_abi`, `target_arch`, `target_endian`, `target_env`, `target_family`, `target_feature`, `target_has_atomic`, `target_has_atomic_equal_alignment`, `target_has_atomic_load_store`, `target_os`, `target_pointer_width`, `target_thread_local`, `target_vendor`, `test`, `ub_checks`, `unix`, and `windows` [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(traitgraph_algo)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(traitgraph_algo)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `traitgraph_algo` [INFO] [stdout] --> src/io/gfa/mod.rs:61:7 [INFO] [stdout] | [INFO] [stdout] 61 | #[cfg(traitgraph_algo)] [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(traitgraph_algo)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(traitgraph_algo)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 16.64s [INFO] running `Command { std: "docker" "inspect" "41b6d28b62cd0aeaba62961fbb755e71c64c06894c8e2b3a2f6051329e971391", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "41b6d28b62cd0aeaba62961fbb755e71c64c06894c8e2b3a2f6051329e971391", kill_on_drop: false }` [INFO] [stdout] 41b6d28b62cd0aeaba62961fbb755e71c64c06894c8e2b3a2f6051329e971391