[INFO] cloning repository https://github.com/nucleohub/biobit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/nucleohub/biobit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnucleohub%2Fbiobit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnucleohub%2Fbiobit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] bbd9e01179b3db77be0602cae77335d1352b71e9
[INFO] checking nucleohub/biobit against master#2e6fc425411280c658d852813de01c5157255088 for pr-128013
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnucleohub%2Fbiobit" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/nucleohub/biobit on toolchain 2e6fc425411280c658d852813de01c5157255088
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/nucleohub/biobit
[INFO] finished tweaking git repo https://github.com/nucleohub/biobit
[INFO] tweaked toml for git repo https://github.com/nucleohub/biobit written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 72 packages to latest compatible versions
[INFO] [stderr]       Adding heck v0.4.1 (latest: v0.5.0)
[INFO] [stderr]       Adding itertools v0.11.0 (latest: v0.13.0)
[INFO] [stderr]       Adding itertools v0.12.1 (latest: v0.13.0)
[INFO] [stderr]       Adding pyo3 v0.21.2 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-build-config v0.21.2 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-ffi v0.21.2 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-macros v0.21.2 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-macros-backend v0.21.2 (latest: v0.22.2)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rstar v0.12.0
[INFO] [stderr]   Downloaded geo v0.28.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 30597a79a0342041ecc2fe70d9316dc2f1db3b22d31c6dd2a3c424ac8d33c3e3
[INFO] running `Command { std: "docker" "start" "-a" "30597a79a0342041ecc2fe70d9316dc2f1db3b22d31c6dd2a3c424ac8d33c3e3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "30597a79a0342041ecc2fe70d9316dc2f1db3b22d31c6dd2a3c424ac8d33c3e3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "30597a79a0342041ecc2fe70d9316dc2f1db3b22d31c6dd2a3c424ac8d33c3e3", kill_on_drop: false }`
[INFO] [stdout] 30597a79a0342041ecc2fe70d9316dc2f1db3b22d31c6dd2a3c424ac8d33c3e3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+2e6fc425411280c658d852813de01c5157255088" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 25b19bf1feb6f7639354c632394e04388a229064acbe7b2f3d377b93e6788365
[INFO] running `Command { std: "docker" "start" "-a" "25b19bf1feb6f7639354c632394e04388a229064acbe7b2f3d377b93e6788365", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.3.0
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling target-lexicon v0.12.15
[INFO] [stderr]     Checking smallvec v1.13.2
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling eyre v0.6.12
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling heapless v0.8.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking hash32 v0.3.1
[INFO] [stderr]     Checking stable_deref_trait v1.2.0
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]     Checking indenter v0.3.3
[INFO] [stderr]    Compiling lock_api v0.4.12
[INFO] [stderr]    Compiling parking_lot_core v0.9.10
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling pyo3-build-config v0.21.2
[INFO] [stderr]     Checking allocator-api2 v0.2.18
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling syn v2.0.72
[INFO] [stderr]     Checking itertools v0.12.1
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]    Compiling portable-atomic v1.7.0
[INFO] [stderr]     Checking scopeguard v1.2.0
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]     Checking robust v1.1.0
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]     Checking rstar v0.12.0
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]     Checking spade v2.10.0
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking geo-types v0.7.13
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking earcutr v0.4.3
[INFO] [stderr]     Checking geographiclib-rs v0.2.4
[INFO] [stderr]     Checking float_next_after v1.0.0
[INFO] [stderr]     Checking log v0.4.22
[INFO] [stderr]     Checking parking_lot v0.12.3
[INFO] [stderr]    Compiling indoc v2.0.5
[INFO] [stderr]    Compiling pyo3-ffi v0.21.2
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling pyo3 v0.21.2
[INFO] [stderr]     Checking unindent v0.2.3
[INFO] [stderr]     Checking geo v0.28.0
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]    Compiling pyo3-macros-backend v0.21.2
[INFO] [stderr]     Checking biobit v0.0.3 (/opt/rustwide/workdir/modules/rs)
[INFO] [stderr]    Compiling pyo3-macros v0.21.2
[INFO] [stderr]     Checking biobit-py v0.0.3 (/opt/rustwide/workdir/modules/py)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 8.67s
[INFO] running `Command { std: "docker" "inspect" "25b19bf1feb6f7639354c632394e04388a229064acbe7b2f3d377b93e6788365", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "25b19bf1feb6f7639354c632394e04388a229064acbe7b2f3d377b93e6788365", kill_on_drop: false }`
[INFO] [stdout] 25b19bf1feb6f7639354c632394e04388a229064acbe7b2f3d377b93e6788365