[INFO] cloning repository https://github.com/kgori/pb_genotyper [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/kgori/pb_genotyper" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Fpb_genotyper", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Fpb_genotyper'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d75384c05ee2c52725cc73fc3b717f492af69c01 [INFO] checking kgori/pb_genotyper against master#22572d0994593197593e2a1b7b18d720a9a349a7 for pr-126452-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Fpb_genotyper" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/kgori/pb_genotyper on toolchain 22572d0994593197593e2a1b7b18d720a9a349a7 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+22572d0994593197593e2a1b7b18d720a9a349a7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/kgori/pb_genotyper [INFO] finished tweaking git repo https://github.com/kgori/pb_genotyper [INFO] tweaked toml for git repo https://github.com/kgori/pb_genotyper written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/kgori/pb_genotyper already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+22572d0994593197593e2a1b7b18d720a9a349a7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rust-htslib v0.46.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+22572d0994593197593e2a1b7b18d720a9a349a7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b63dd888c849464ea22dbe24f19ae5dc753ecb3fafe1ad344b4d2440342b7063 [INFO] running `Command { std: "docker" "start" "-a" "b63dd888c849464ea22dbe24f19ae5dc753ecb3fafe1ad344b4d2440342b7063", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b63dd888c849464ea22dbe24f19ae5dc753ecb3fafe1ad344b4d2440342b7063", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b63dd888c849464ea22dbe24f19ae5dc753ecb3fafe1ad344b4d2440342b7063", kill_on_drop: false }` [INFO] [stdout] b63dd888c849464ea22dbe24f19ae5dc753ecb3fafe1ad344b4d2440342b7063 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+22572d0994593197593e2a1b7b18d720a9a349a7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 875478053c4ab9decbe6e95d70a5ad869fa2d06818454c929144c92a6f2ca1ff [INFO] running `Command { std: "docker" "start" "-a" "875478053c4ab9decbe6e95d70a5ad869fa2d06818454c929144c92a6f2ca1ff", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.81 [INFO] [stderr] Compiling autocfg v1.2.0 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking memchr v2.7.2 [INFO] [stderr] Compiling serde v1.0.198 [INFO] [stderr] Compiling rustversion v1.0.15 [INFO] [stderr] Checking bytemuck v1.15.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Checking regex-syntax v0.8.3 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling thiserror v1.0.59 [INFO] [stderr] Checking tinyvec v1.6.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling anyhow v1.0.82 [INFO] [stderr] Compiling crc32fast v1.4.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking hashbrown v0.14.3 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking unicode-normalization v0.1.23 [INFO] [stderr] Checking wide v0.7.16 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking itoa v1.0.11 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking either v1.11.0 [INFO] [stderr] Checking ryu v1.0.17 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Checking clap_builder v4.5.7 [INFO] [stderr] Checking miniz_oxide v0.7.2 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Compiling jobserver v0.1.31 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking idna v0.5.0 [INFO] [stderr] Compiling syn v2.0.60 [INFO] [stderr] Compiling cc v1.0.95 [INFO] [stderr] Checking num-complex v0.4.5 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking indexmap v2.2.6 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking flate2 v1.0.28 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking url v2.5.0 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Checking petgraph v0.6.4 [INFO] [stderr] Checking regex-automata v0.4.6 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Compiling libz-sys v1.1.16 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling hts-sys v2.1.1 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling serde_derive v1.0.198 [INFO] [stderr] Compiling thiserror-impl v1.0.59 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling clap_derive v4.5.5 [INFO] [stderr] Checking regex v1.10.4 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Checking clap v4.5.7 [INFO] [stderr] Checking rust-htslib v0.46.0 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking statrs v0.16.0 [INFO] [stderr] Checking bio v1.6.0 [INFO] [stderr] Checking pb_genotyper v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 48.47s [INFO] running `Command { std: "docker" "inspect" "875478053c4ab9decbe6e95d70a5ad869fa2d06818454c929144c92a6f2ca1ff", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "875478053c4ab9decbe6e95d70a5ad869fa2d06818454c929144c92a6f2ca1ff", kill_on_drop: false }` [INFO] [stdout] 875478053c4ab9decbe6e95d70a5ad869fa2d06818454c929144c92a6f2ca1ff [INFO] checking kgori/pb_genotyper against try#6289438dbad80b1a0029c66dd3f6abf57c2c51be for pr-126452-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Fpb_genotyper" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/kgori/pb_genotyper on toolchain 6289438dbad80b1a0029c66dd3f6abf57c2c51be [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+6289438dbad80b1a0029c66dd3f6abf57c2c51be" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/kgori/pb_genotyper [INFO] finished tweaking git repo https://github.com/kgori/pb_genotyper [INFO] tweaked toml for git repo https://github.com/kgori/pb_genotyper written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/kgori/pb_genotyper already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+6289438dbad80b1a0029c66dd3f6abf57c2c51be" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+6289438dbad80b1a0029c66dd3f6abf57c2c51be" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 417dc0df0876a7448b67138b609eb7ef6967969f30f82d6dee8d414320cda4bd [INFO] running `Command { std: "docker" "start" "-a" "417dc0df0876a7448b67138b609eb7ef6967969f30f82d6dee8d414320cda4bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "417dc0df0876a7448b67138b609eb7ef6967969f30f82d6dee8d414320cda4bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "417dc0df0876a7448b67138b609eb7ef6967969f30f82d6dee8d414320cda4bd", kill_on_drop: false }` [INFO] [stdout] 417dc0df0876a7448b67138b609eb7ef6967969f30f82d6dee8d414320cda4bd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+6289438dbad80b1a0029c66dd3f6abf57c2c51be" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e666810f0e851262d11c9b6ef57f104ac96b5f5b871aa7a82dc6b88986299477 [INFO] running `Command { std: "docker" "start" "-a" "e666810f0e851262d11c9b6ef57f104ac96b5f5b871aa7a82dc6b88986299477", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.81 [INFO] [stderr] Compiling autocfg v1.2.0 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking memchr v2.7.2 [INFO] [stderr] Compiling serde v1.0.198 [INFO] [stderr] Compiling rustversion v1.0.15 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking bytemuck v1.15.0 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling thiserror v1.0.59 [INFO] [stderr] Checking regex-syntax v0.8.3 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Checking tinyvec v1.6.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling anyhow v1.0.82 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling crc32fast v1.4.0 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking hashbrown v0.14.3 [INFO] [stderr] Checking wide v0.7.16 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Compiling jobserver v0.1.31 [INFO] [stderr] Checking itoa v1.0.11 [INFO] [stderr] Checking unicode-normalization v0.1.23 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Checking ryu v1.0.17 [INFO] [stderr] Checking either v1.11.0 [INFO] [stderr] Checking clap_builder v4.5.7 [INFO] [stderr] Compiling cc v1.0.95 [INFO] [stderr] Checking miniz_oxide v0.7.2 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Compiling syn v2.0.60 [INFO] [stderr] Checking indexmap v2.2.6 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking idna v0.5.0 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking flate2 v1.0.28 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Checking url v2.5.0 [INFO] [stderr] Checking petgraph v0.6.4 [INFO] [stderr] Checking regex-automata v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.5 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling libz-sys v1.1.16 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling hts-sys v2.1.1 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking regex v1.10.4 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling serde_derive v1.0.198 [INFO] [stderr] Compiling thiserror-impl v1.0.59 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling clap_derive v4.5.5 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Checking clap v4.5.7 [INFO] [stderr] Checking rust-htslib v0.46.0 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking statrs v0.16.0 [INFO] [stderr] Checking bio v1.6.0 [INFO] [stderr] Checking pb_genotyper v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 33.53s [INFO] running `Command { std: "docker" "inspect" "e666810f0e851262d11c9b6ef57f104ac96b5f5b871aa7a82dc6b88986299477", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e666810f0e851262d11c9b6ef57f104ac96b5f5b871aa7a82dc6b88986299477", kill_on_drop: false }` [INFO] [stdout] e666810f0e851262d11c9b6ef57f104ac96b5f5b871aa7a82dc6b88986299477