[INFO] cloning repository https://github.com/sriram98v/near-linear-cophenetic-distance
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sriram98v/near-linear-cophenetic-distance" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fnear-linear-cophenetic-distance", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fnear-linear-cophenetic-distance'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] aa4764d6aef339490f73f41812189a41ba0605a6
[INFO] checking sriram98v/near-linear-cophenetic-distance against master#22572d0994593197593e2a1b7b18d720a9a349a7 for pr-126452-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fnear-linear-cophenetic-distance" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/sriram98v/near-linear-cophenetic-distance on toolchain 22572d0994593197593e2a1b7b18d720a9a349a7
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+22572d0994593197593e2a1b7b18d720a9a349a7" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/sriram98v/near-linear-cophenetic-distance
[INFO] finished tweaking git repo https://github.com/sriram98v/near-linear-cophenetic-distance
[INFO] tweaked toml for git repo https://github.com/sriram98v/near-linear-cophenetic-distance written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/sriram98v/near-linear-cophenetic-distance already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+22572d0994593197593e2a1b7b18d720a9a349a7" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded phylo v0.1.1
[INFO] [stderr]   Downloaded vers-vecs v1.4.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+22572d0994593197593e2a1b7b18d720a9a349a7" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 07d38a25ae658f91f9e8497c5b0c8521ed6592a4b544abf7e4987f5e968f23dc
[INFO] running `Command { std: "docker" "start" "-a" "07d38a25ae658f91f9e8497c5b0c8521ed6592a4b544abf7e4987f5e968f23dc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "07d38a25ae658f91f9e8497c5b0c8521ed6592a4b544abf7e4987f5e968f23dc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "07d38a25ae658f91f9e8497c5b0c8521ed6592a4b544abf7e4987f5e968f23dc", kill_on_drop: false }`
[INFO] [stdout] 07d38a25ae658f91f9e8497c5b0c8521ed6592a4b544abf7e4987f5e968f23dc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+22572d0994593197593e2a1b7b18d720a9a349a7" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9f900417011c5e353108e2cb86616f1ba6e7616596458767fb20c12c17cc6f2e
[INFO] running `Command { std: "docker" "start" "-a" "9f900417011c5e353108e2cb86616f1ba6e7616596458767fb20c12c17cc6f2e", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]     Checking colorchoice v1.0.1
[INFO] [stderr]     Checking anstyle-query v1.1.0
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.0
[INFO] [stderr]     Checking anstyle v1.0.7
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking anstyle-parse v0.2.4
[INFO] [stderr]     Checking clap_lex v0.7.1
[INFO] [stderr]    Compiling portable-atomic v1.6.0
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]     Checking number_prefix v0.4.0
[INFO] [stderr]     Checking vers-vecs v1.4.0
[INFO] [stderr]     Checking regex-lite v0.1.6
[INFO] [stderr]     Checking condtype v1.3.0
[INFO] [stderr]     Checking console v0.15.8
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling syn v2.0.71
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking anstream v0.6.14
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking indicatif v0.17.8
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking terminal_size v0.3.0
[INFO] [stderr]     Checking clap_builder v4.5.9
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]     Checking phylo v0.1.1
[INFO] [stderr]    Compiling divan-macros v0.1.14
[INFO] [stderr]     Checking clap v4.5.9
[INFO] [stderr]     Checking nlcd v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking divan v0.1.14
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&<<Self as phylo::prelude::RootedTree<'_>>::Node as phylo::prelude::RootedMetaNode<'_>>::Meta` instead of cloning the inner type
[INFO] [stdout]    --> src/nlcd/near_linear_cophenetic_distance.rs:369:78
[INFO] [stdout]     |
[INFO] [stdout] 369 |         let taxa_set: HashSet<_> = binding1.intersection(&binding2).map(|x| x.clone().clone()).collect();
[INFO] [stdout]     |                                                                              ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(suspicious_double_ref_op)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&<<Self as phylo::prelude::RootedTree<'_>>::Node as phylo::prelude::RootedMetaNode<'_>>::Meta` instead of cloning the inner type
[INFO] [stdout]    --> src/nlcd/near_linear_cophenetic_distance.rs:436:48
[INFO] [stdout]     |
[INFO] [stdout] 436 |                 .filter(|x| taxa_set.contains(x.clone()))
[INFO] [stdout]     |                                                ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&<<Self as phylo::prelude::RootedTree<'_>>::Node as phylo::prelude::RootedMetaNode<'_>>::Meta` instead of cloning the inner type
[INFO] [stdout]    --> src/nlcd/near_linear_cophenetic_distance.rs:442:48
[INFO] [stdout]     |
[INFO] [stdout] 442 |                 .filter(|x| taxa_set.contains(x.clone()))
[INFO] [stdout]     |                                                ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&<<Self as phylo::prelude::RootedTree<'_>>::Node as phylo::prelude::RootedMetaNode<'_>>::Meta` instead of cloning the inner type
[INFO] [stdout]    --> src/nlcd/near_linear_cophenetic_distance.rs:369:78
[INFO] [stdout]     |
[INFO] [stdout] 369 |         let taxa_set: HashSet<_> = binding1.intersection(&binding2).map(|x| x.clone().clone()).collect();
[INFO] [stdout]     |                                                                              ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(suspicious_double_ref_op)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&<<Self as phylo::prelude::RootedTree<'_>>::Node as phylo::prelude::RootedMetaNode<'_>>::Meta` instead of cloning the inner type
[INFO] [stdout]    --> src/nlcd/near_linear_cophenetic_distance.rs:436:48
[INFO] [stdout]     |
[INFO] [stdout] 436 |                 .filter(|x| taxa_set.contains(x.clone()))
[INFO] [stdout]     |                                                ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&<<Self as phylo::prelude::RootedTree<'_>>::Node as phylo::prelude::RootedMetaNode<'_>>::Meta` instead of cloning the inner type
[INFO] [stdout]    --> src/nlcd/near_linear_cophenetic_distance.rs:442:48
[INFO] [stdout]     |
[INFO] [stdout] 442 |                 .filter(|x| taxa_set.contains(x.clone()))
[INFO] [stdout]     |                                                ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 11.78s
[INFO] running `Command { std: "docker" "inspect" "9f900417011c5e353108e2cb86616f1ba6e7616596458767fb20c12c17cc6f2e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9f900417011c5e353108e2cb86616f1ba6e7616596458767fb20c12c17cc6f2e", kill_on_drop: false }`
[INFO] [stdout] 9f900417011c5e353108e2cb86616f1ba6e7616596458767fb20c12c17cc6f2e