[INFO] fetching crate chemfiles 0.10.41... [INFO] checking chemfiles-0.10.41 against master#f9515fdd5aa132e27d9b580a35b27f4b453251c1 for pr-125923 [INFO] extracting crate chemfiles 0.10.41 into /workspace/builds/worker-5-tc1/source [INFO] validating manifest of crates.io crate chemfiles 0.10.41 on toolchain f9515fdd5aa132e27d9b580a35b27f4b453251c1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f9515fdd5aa132e27d9b580a35b27f4b453251c1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate chemfiles 0.10.41 [INFO] finished tweaking crates.io crate chemfiles 0.10.41 [INFO] tweaked toml for crates.io crate chemfiles 0.10.41 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] crate crates.io crate chemfiles 0.10.41 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f9515fdd5aa132e27d9b580a35b27f4b453251c1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cmake v0.1.48 [INFO] [stderr] Downloaded chemfiles-sys v0.10.41 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+f9515fdd5aa132e27d9b580a35b27f4b453251c1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6514b100df44c9c3bc23ee0812c55189d67143a948b9d357bc00672b6f920213 [INFO] running `Command { std: "docker" "start" "-a" "6514b100df44c9c3bc23ee0812c55189d67143a948b9d357bc00672b6f920213", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6514b100df44c9c3bc23ee0812c55189d67143a948b9d357bc00672b6f920213", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6514b100df44c9c3bc23ee0812c55189d67143a948b9d357bc00672b6f920213", kill_on_drop: false }` [INFO] [stdout] 6514b100df44c9c3bc23ee0812c55189d67143a948b9d357bc00672b6f920213 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+f9515fdd5aa132e27d9b580a35b27f4b453251c1" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f95ba3a064125e03b121527a77a17ba23911cd93a8c388e466f25606da54d706 [INFO] running `Command { std: "docker" "start" "-a" "f95ba3a064125e03b121527a77a17ba23911cd93a8c388e466f25606da54d706", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.73 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling cmake v0.1.48 [INFO] [stderr] Compiling chemfiles-sys v0.10.41 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.41` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-203f72b6fda978fb/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE = None [INFO] [stderr] CMAKE = None [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-55679c8e17984035/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/chemfiles-sys-0.10.41/." "-DCHEMFILES_VERSION=0.10.4" "-DCHFL_RUST_PREBUILT_TARGET=x86_64-linux-gnu" "-DCHFL_RUST_PREBUILT_SHA256=2ac97eba5b79f8051cd86184e00379271c72e85d2bbcbcd50626b0ec602a1978" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-55679c8e17984035/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The CXX compiler identification is GNU 11.4.0 [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- trying to download https://github.com/chemfiles/chemfiles-prebuilt/releases/download/v0.10.4/chemfiles-static.v0.10.4.x86_64-linux-gnu.tar.gz [INFO] [stderr] -- failed to download prebuilt chemfiles, building from sources [INFO] [stderr] -- The C compiler identification is GNU 11.4.0 [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Unpacking bzip2 sources [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking pugixml sources [INFO] [stderr] -- Unpacking gemmi sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-55679c8e17984035/out/build [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-55679c8e17984035/out/build" && MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "cmake" "--build" "." "--target" "install" "--config" "Debug" "--parallel" "8" [INFO] [stderr] [ 0%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/blocksort.c.o [INFO] [stderr] [ 0%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o [INFO] [stderr] [ 1%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/adler32.c.o [INFO] [stderr] [ 2%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o [INFO] [stderr] [ 3%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 4%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o [INFO] [stderr] [ 5%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/check.c.o [INFO] [stderr] [ 6%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o [INFO] [stderr] [ 6%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/compress.c.o 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Run "cmake [INFO] [stderr] --help-policy CMP0077" for policy details. Use the cmake_policy command to [INFO] [stderr] set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] For compatibility with older versions of CMake, option is clearing the [INFO] [stderr] normal variable 'BUILD_SHARED_LIBS'. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning: [INFO] [stderr] Manually-specified variables were not used by the project: [INFO] [stderr] [INFO] [stderr] CMAKE_ASM_COMPILER [INFO] [stderr] CMAKE_ASM_FLAGS [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] gmake: warning: -j8 forced in submake: resetting jobserver mode. [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:146: chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 1 [INFO] [stderr] gmake[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:214: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] gmake: *** [Makefile:136: all] Error 2 [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.48/src/lib.rs:975:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ae98e80905 - std::backtrace_rs::backtrace::libunwind::trace::h0a952a94dd6a7728 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5 [INFO] [stderr] 1: 0x55ae98e80905 - std::backtrace_rs::backtrace::trace_unsynchronized::hbca6a4f4ce7c6578 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55ae98e80905 - std::sys_common::backtrace::_print_fmt::h21220b6ac920eb81 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/sys_common/backtrace.rs:68:5 [INFO] [stderr] 3: 0x55ae98e80905 - ::fmt::hccb72e63ad260853 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/sys_common/backtrace.rs:44:22 [INFO] [stderr] 4: 0x55ae98ea542b - core::fmt::rt::Argument::fmt::he5708e8e475f9d5b [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/core/src/fmt/rt.rs:165:63 [INFO] [stderr] 5: 0x55ae98ea542b - core::fmt::write::h5a08ed261ce5dd62 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/core/src/fmt/mod.rs:1168:21 [INFO] [stderr] 6: 0x55ae98e7d93f - std::io::Write::write_fmt::haa4cef16cd3cbc8d [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/io/mod.rs:1835:15 [INFO] [stderr] 7: 0x55ae98e806de - std::sys_common::backtrace::_print::h2b40016aabb98815 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/sys_common/backtrace.rs:47:5 [INFO] [stderr] 8: 0x55ae98e806de - std::sys_common::backtrace::print::h9a2368d8ceb764f8 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/sys_common/backtrace.rs:34:9 [INFO] [stderr] 9: 0x55ae98e81c99 - std::panicking::default_hook::{{closure}}::h234bded5db8ed61d [INFO] [stderr] 10: 0x55ae98e81a3c - std::panicking::default_hook::hfccd8ae6abbb20c2 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/panicking.rs:292:9 [INFO] [stderr] 11: 0x55ae98e822a1 - std::panicking::rust_panic_with_hook::h88b87eaf19d0693b [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/panicking.rs:793:13 [INFO] [stderr] 12: 0x55ae98e82107 - std::panicking::begin_panic_handler::{{closure}}::h86bbf40845005a40 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/panicking.rs:667:13 [INFO] [stderr] 13: 0x55ae98e80dc9 - std::sys_common::backtrace::__rust_end_short_backtrace::h808e2541454aaba3 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/sys_common/backtrace.rs:171:18 [INFO] [stderr] 14: 0x55ae98e81db4 - rust_begin_unwind [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/panicking.rs:658:5 [INFO] [stderr] 15: 0x55ae98ea4223 - core::panicking::panic_fmt::h0e19be3765ffab82 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/core/src/panicking.rs:74:14 [INFO] [stderr] 16: 0x55ae98e16302 - cmake::fail::h8b4ad0c1312b625d [INFO] [stderr] 17: 0x55ae98e15a69 - cmake::run::h99b6ad6e135473d4 [INFO] [stderr] 18: 0x55ae98e12c78 - cmake::Config::build::h3272626b7d966954 [INFO] [stderr] 19: 0x55ae98e0bb8e - build_script_build::build_chemfiles::hb2a11bae3c1e73ad [INFO] [stderr] 20: 0x55ae98e0b033 - build_script_build::main::hcd6183816e45200b [INFO] [stderr] 21: 0x55ae98e09173 - core::ops::function::FnOnce::call_once::h426272a051bcb3c7 [INFO] [stderr] 22: 0x55ae98e08f06 - std::sys_common::backtrace::__rust_begin_short_backtrace::hbf76711f5764f746 [INFO] [stderr] 23: 0x55ae98e09019 - std::rt::lang_start::{{closure}}::hedac95bf1af5c165 [INFO] [stderr] 24: 0x55ae98e79692 - core::ops::function::impls:: for &F>::call_once::ha856ba583bc7ea3c [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 25: 0x55ae98e79692 - std::panicking::try::do_call::ha185ee7f4fde4c5c [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/panicking.rs:553:40 [INFO] [stderr] 26: 0x55ae98e79692 - std::panicking::try::h167ed036718c8aa6 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/panicking.rs:517:19 [INFO] [stderr] 27: 0x55ae98e79692 - std::panic::catch_unwind::he3269c2ed45e81c4 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/panic.rs:350:14 [INFO] [stderr] 28: 0x55ae98e79692 - std::rt::lang_start_internal::{{closure}}::h0110ed6dcc417cef [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/rt.rs:141:48 [INFO] [stderr] 29: 0x55ae98e79692 - std::panicking::try::do_call::h04fc0838ef6fc08a [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/panicking.rs:553:40 [INFO] [stderr] 30: 0x55ae98e79692 - std::panicking::try::h54de59c1d75e9efa [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/panicking.rs:517:19 [INFO] [stderr] 31: 0x55ae98e79692 - std::panic::catch_unwind::h261e3fdee82339c6 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/panic.rs:350:14 [INFO] [stderr] 32: 0x55ae98e79692 - std::rt::lang_start_internal::hc5a448102245bf98 [INFO] [stderr] at /rustc/f9515fdd5aa132e27d9b580a35b27f4b453251c1/library/std/src/rt.rs:141:20 [INFO] [stderr] 33: 0x55ae98e08ff7 - std::rt::lang_start::h98a3442fa6f74b4c [INFO] [stderr] 34: 0x55ae98e0c675 - main [INFO] [stderr] 35: 0x7ff25f171d90 - [INFO] [stderr] 36: 0x7ff25f171e40 - __libc_start_main [INFO] [stderr] 37: 0x55ae98e08df5 - _start [INFO] [stderr] 38: 0x0 - [INFO] running `Command { std: "docker" "inspect" "f95ba3a064125e03b121527a77a17ba23911cd93a8c388e466f25606da54d706", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f95ba3a064125e03b121527a77a17ba23911cd93a8c388e466f25606da54d706", kill_on_drop: false }` [INFO] [stdout] f95ba3a064125e03b121527a77a17ba23911cd93a8c388e466f25606da54d706