[INFO] cloning repository https://github.com/keithyin/poa [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/poa" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fpoa", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fpoa'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 83d783a833cefc84942de25a4c4f6d7286fbed30 [INFO] checking keithyin/poa against master#a299aa5df79dd8e5a1405b97ddd7b367b61eecc6 for pr-125923-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fpoa" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/keithyin/poa on toolchain a299aa5df79dd8e5a1405b97ddd7b367b61eecc6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a299aa5df79dd8e5a1405b97ddd7b367b61eecc6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/keithyin/poa [INFO] finished tweaking git repo https://github.com/keithyin/poa [INFO] tweaked toml for git repo https://github.com/keithyin/poa written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/keithyin/poa already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a299aa5df79dd8e5a1405b97ddd7b367b61eecc6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [ERROR] this task or one of its parent failed! [ERROR] no output for 300 seconds [ERROR] note: run with `RUST_BACKTRACE=1` to display a backtrace. [INFO] checking keithyin/poa against try#8585d8c57bfa6d7d66340412e06b5611fa79cc61 for pr-125923-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fpoa" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/keithyin/poa on toolchain 8585d8c57bfa6d7d66340412e06b5611fa79cc61 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8585d8c57bfa6d7d66340412e06b5611fa79cc61" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/keithyin/poa [INFO] finished tweaking git repo https://github.com/keithyin/poa [INFO] tweaked toml for git repo https://github.com/keithyin/poa written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/keithyin/poa already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8585d8c57bfa6d7d66340412e06b5611fa79cc61" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+8585d8c57bfa6d7d66340412e06b5611fa79cc61" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 12088c8d0bfb6e9da633deac02e292b031191934c8d4bd443863fb1feed2e28f [INFO] running `Command { std: "docker" "start" "-a" "12088c8d0bfb6e9da633deac02e292b031191934c8d4bd443863fb1feed2e28f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "12088c8d0bfb6e9da633deac02e292b031191934c8d4bd443863fb1feed2e28f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "12088c8d0bfb6e9da633deac02e292b031191934c8d4bd443863fb1feed2e28f", kill_on_drop: false }` [INFO] [stdout] 12088c8d0bfb6e9da633deac02e292b031191934c8d4bd443863fb1feed2e28f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+8585d8c57bfa6d7d66340412e06b5611fa79cc61" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5d063d4a5ecb73022cc98fba9c3500837125c0a205a00ff62913be8bf1f788b0 [INFO] running `Command { std: "docker" "start" "-a" "5d063d4a5ecb73022cc98fba9c3500837125c0a205a00ff62913be8bf1f788b0", kill_on_drop: false }` [INFO] [stderr] Checking hashbrown v0.14.3 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking indexmap v2.1.0 [INFO] [stderr] Checking petgraph v0.6.4 [INFO] [stderr] Checking POA v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `csr::Csr`, `graphmap::GraphMap`, and `matrix_graph::MatrixGraph` [INFO] [stdout] --> src/main.rs:1:16 [INFO] [stdout] | [INFO] [stdout] 1 | use petgraph::{graphmap::GraphMap, matrix_graph::MatrixGraph, csr::Csr}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `self` [INFO] [stdout] --> src/poa.rs:5:28 [INFO] [stdout] | [INFO] [stdout] 5 | use crate::{alignment::{*, self}, dna_utils::reverse_complement}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `csr::Csr`, `graphmap::GraphMap`, and `matrix_graph::MatrixGraph` [INFO] [stdout] --> src/main.rs:1:16 [INFO] [stdout] | [INFO] [stdout] 1 | use petgraph::{graphmap::GraphMap, matrix_graph::MatrixGraph, csr::Csr}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `self` [INFO] [stdout] --> src/poa.rs:5:28 [INFO] [stdout] | [INFO] [stdout] 5 | use crate::{alignment::{*, self}, dna_utils::reverse_complement}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/poa.rs:233:25 [INFO] [stdout] | [INFO] [stdout] 233 | let mut target_node = self.graph.node_weight_mut(target[target_cursor]).unwrap(); [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/poa.rs:233:25 [INFO] [stdout] | [INFO] [stdout] 233 | let mut target_node = self.graph.node_weight_mut(target[target_cursor]).unwrap(); [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `score_threshold` is never read [INFO] [stdout] --> src/poa.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct PartialOrderAlignment { [INFO] [stdout] | --------------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 15 | score_threshold: f32, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `score` is never read [INFO] [stdout] --> src/poa.rs:345:5 [INFO] [stdout] | [INFO] [stdout] 340 | pub struct PoaNode { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 345 | score: f32, [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `PoaNode` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `weight` is never read [INFO] [stdout] --> src/poa.rs:364:5 [INFO] [stdout] | [INFO] [stdout] 363 | pub struct PoaEdge { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] 364 | weight: u32 [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `PoaEdge` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variants `GLOBAL` and `SEMIGLOBAL` are never constructed [INFO] [stdout] --> src/alignment.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 16 | pub enum AlignMode { [INFO] [stdout] | --------- variants in this enum [INFO] [stdout] 17 | GLOBAL, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 18 | SEMIGLOBAL, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `mismatch_score` and `deletion_score` are never read [INFO] [stdout] --> src/alignment.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 23 | pub struct AlignParams { [INFO] [stdout] | ----------- fields in this struct [INFO] [stdout] 24 | pub match_score: i32, [INFO] [stdout] 25 | pub mismatch_score: i32, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] 26 | pub insertion_score: i32, [INFO] [stdout] 27 | pub deletion_score: i32, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `END` is never constructed [INFO] [stdout] --> src/alignment.rs:46:5 [INFO] [stdout] | [INFO] [stdout] 41 | pub enum TransMode { [INFO] [stdout] | --------- variant in this enum [INFO] [stdout] ... [INFO] [stdout] 46 | END [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `TransMode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `align` is never used [INFO] [stdout] --> src/alignment.rs:131:8 [INFO] [stdout] | [INFO] [stdout] 131 | pub fn align(s1: &[u8], s2: &[u8], align_cfg: &AlignConfig) -> AlignMatrix{ [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `score_threshold` is never read [INFO] [stdout] --> src/poa.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct PartialOrderAlignment { [INFO] [stdout] | --------------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 15 | score_threshold: f32, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `score` is never read [INFO] [stdout] --> src/poa.rs:345:5 [INFO] [stdout] | [INFO] [stdout] 340 | pub struct PoaNode { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 345 | score: f32, [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `PoaNode` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `weight` is never read [INFO] [stdout] --> src/poa.rs:364:5 [INFO] [stdout] | [INFO] [stdout] 363 | pub struct PoaEdge { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] 364 | weight: u32 [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `PoaEdge` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variants `GLOBAL` and `SEMIGLOBAL` are never constructed [INFO] [stdout] --> src/alignment.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 16 | pub enum AlignMode { [INFO] [stdout] | --------- variants in this enum [INFO] [stdout] 17 | GLOBAL, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 18 | SEMIGLOBAL, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `mismatch_score` and `deletion_score` are never read [INFO] [stdout] --> src/alignment.rs:25:9 [INFO] [stdout] | [INFO] [stdout] 23 | pub struct AlignParams { [INFO] [stdout] | ----------- fields in this struct [INFO] [stdout] 24 | pub match_score: i32, [INFO] [stdout] 25 | pub mismatch_score: i32, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] 26 | pub insertion_score: i32, [INFO] [stdout] 27 | pub deletion_score: i32, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant `END` is never constructed [INFO] [stdout] --> src/alignment.rs:46:5 [INFO] [stdout] | [INFO] [stdout] 41 | pub enum TransMode { [INFO] [stdout] | --------- variant in this enum [INFO] [stdout] ... [INFO] [stdout] 46 | END [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `TransMode` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `align` is never used [INFO] [stdout] --> src/alignment.rs:131:8 [INFO] [stdout] | [INFO] [stdout] 131 | pub fn align(s1: &[u8], s2: &[u8], align_cfg: &AlignConfig) -> AlignMatrix{ [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 10 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 10 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3.27s [INFO] running `Command { std: "docker" "inspect" "5d063d4a5ecb73022cc98fba9c3500837125c0a205a00ff62913be8bf1f788b0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5d063d4a5ecb73022cc98fba9c3500837125c0a205a00ff62913be8bf1f788b0", kill_on_drop: false }` [INFO] [stdout] 5d063d4a5ecb73022cc98fba9c3500837125c0a205a00ff62913be8bf1f788b0