[INFO] fetching crate hts 0.1.18... [INFO] checking hts-0.1.18 against master#506512391b1a75ae450d36c9420978402a91abcc for pr-125384 [INFO] extracting crate hts 0.1.18 into /workspace/builds/worker-6-tc1/source [INFO] validating manifest of crates.io crate hts 0.1.18 on toolchain 506512391b1a75ae450d36c9420978402a91abcc [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hts 0.1.18 [INFO] finished tweaking crates.io crate hts 0.1.18 [INFO] tweaked toml for crates.io crate hts 0.1.18 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] crate crates.io crate hts 0.1.18 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded libloading v0.7.0 [INFO] [stderr] Downloaded bindgen v0.55.1 [INFO] [stderr] Downloaded clang-sys v1.2.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1a47c3412079b44bddef7ef59743183b4c876f06467287323408bf5f16eacf72 [INFO] running `Command { std: "docker" "start" "-a" "1a47c3412079b44bddef7ef59743183b4c876f06467287323408bf5f16eacf72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1a47c3412079b44bddef7ef59743183b4c876f06467287323408bf5f16eacf72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1a47c3412079b44bddef7ef59743183b4c876f06467287323408bf5f16eacf72", kill_on_drop: false }` [INFO] [stdout] 1a47c3412079b44bddef7ef59743183b4c876f06467287323408bf5f16eacf72 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4098f489656f71cb5dbd9146d4d2195adbcc20a7f0541f7a5e3659808845c8eb [INFO] running `Command { std: "docker" "start" "-a" "4098f489656f71cb5dbd9146d4d2195adbcc20a7f0541f7a5e3659808845c8eb", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling libc v0.2.93 [INFO] [stderr] Compiling version_check v0.9.3 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling regex-syntax v0.6.23 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling clang-sys v1.2.0 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling libloading v0.7.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling regex v1.4.5 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling hts v0.1.18 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `hts v0.1.18 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hts-eee46db0511885e2/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/hts-cad12e7fc1e34b68/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/hts-cad12e7fc1e34b68/out/htslib [INFO] [stderr] + git clone --recursive -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at build.rs:33:5: [INFO] [stderr] assertion failed: Command::new("bash").args(&["build_htslib.sh", [INFO] [stderr] &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success() [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55de29a5c6f5 - std::backtrace_rs::backtrace::libunwind::trace::h876d7c806a499a4c [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/../../backtrace/src/backtrace/libunwind.rs:105:5 [INFO] [stderr] 1: 0x55de29a5c6f5 - std::backtrace_rs::backtrace::trace_unsynchronized::h93aa6ac20204363f [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55de29a5c6f5 - std::sys_common::backtrace::_print_fmt::haa4d06348037420c [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/sys_common/backtrace.rs:68:5 [INFO] [stderr] 3: 0x55de29a5c6f5 - ::fmt::hb19a1068483db389 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/sys_common/backtrace.rs:44:22 [INFO] [stderr] 4: 0x55de29a863cb - core::fmt::rt::Argument::fmt::he1186800a1f8dba1 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/core/src/fmt/rt.rs:165:63 [INFO] [stderr] 5: 0x55de29a863cb - core::fmt::write::h93b97d526ac83ab7 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/core/src/fmt/mod.rs:1169:21 [INFO] [stderr] 6: 0x55de29a5991f - std::io::Write::write_fmt::h5b8b8a434bcca5dd [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/io/mod.rs:1835:15 [INFO] [stderr] 7: 0x55de29a5c4ce - std::sys_common::backtrace::_print::h68eb04d9824256f0 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/sys_common/backtrace.rs:47:5 [INFO] [stderr] 8: 0x55de29a5c4ce - std::sys_common::backtrace::print::h9c98f0d9c4306586 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/sys_common/backtrace.rs:34:9 [INFO] [stderr] 9: 0x55de29a5da59 - std::panicking::default_hook::{{closure}}::hcf6830dc400daae4 [INFO] [stderr] 10: 0x55de29a5d79d - std::panicking::default_hook::h483615856e3a5cc0 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:298:9 [INFO] [stderr] 11: 0x55de29a5df63 - std::panicking::rust_panic_with_hook::h36ebc998f351e5fd [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:795:13 [INFO] [stderr] 12: 0x55de29a5de0b - std::panicking::begin_panic_handler::{{closure}}::h686207a93492b797 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:656:13 [INFO] [stderr] 13: 0x55de29a5cbb9 - std::sys_common::backtrace::__rust_end_short_backtrace::h2e37e6bf5aac538a [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/sys_common/backtrace.rs:171:18 [INFO] [stderr] 14: 0x55de29a5db77 - rust_begin_unwind [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:652:5 [INFO] [stderr] 15: 0x55de29a84603 - core::panicking::panic_fmt::heae5d8e5e3703b89 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/core/src/panicking.rs:72:14 [INFO] [stderr] 16: 0x55de29a846ac - core::panicking::panic::h1f9f919026379b49 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/core/src/panicking.rs:146:5 [INFO] [stderr] 17: 0x55de296ac7d5 - build_script_build::build_own_htslib::h7302adcdbcc999bd [INFO] [stderr] 18: 0x55de296acc91 - build_script_build::main::ha6f58bb60e7e70e0 [INFO] [stderr] 19: 0x55de296a9e53 - core::ops::function::FnOnce::call_once::hf3d3adc8d74171b9 [INFO] [stderr] 20: 0x55de296a9276 - std::sys_common::backtrace::__rust_begin_short_backtrace::h095cb1023e850382 [INFO] [stderr] 21: 0x55de296a98b9 - std::rt::lang_start::{{closure}}::h1a3be254df08e2cc [INFO] [stderr] 22: 0x55de29a55afd - core::ops::function::impls:: for &F>::call_once::h75d0a4fe40296b94 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 23: 0x55de29a55afd - std::panicking::try::do_call::ha27ca65264b021a4 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:559:40 [INFO] [stderr] 24: 0x55de29a55afd - std::panicking::try::h901e100a17b3cd54 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:523:19 [INFO] [stderr] 25: 0x55de29a55afd - std::panic::catch_unwind::h13d256f1691dfb07 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panic.rs:149:14 [INFO] [stderr] 26: 0x55de29a55afd - std::rt::lang_start_internal::{{closure}}::hdf5a5a26190e1fd8 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/rt.rs:141:48 [INFO] [stderr] 27: 0x55de29a55afd - std::panicking::try::do_call::h3a8fb98242ec30e5 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:559:40 [INFO] [stderr] 28: 0x55de29a55afd - std::panicking::try::h881801cd3cb8ba77 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:523:19 [INFO] [stderr] 29: 0x55de29a55afd - std::panic::catch_unwind::he14d380083644433 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panic.rs:149:14 [INFO] [stderr] 30: 0x55de29a55afd - std::rt::lang_start_internal::hf560e7575b65e65f [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/rt.rs:141:20 [INFO] [stderr] 31: 0x55de296a9897 - std::rt::lang_start::h28fa17bf2e7e2f94 [INFO] [stderr] 32: 0x55de296ad285 - main [INFO] [stderr] 33: 0x7f1cbb07dd90 - [INFO] [stderr] 34: 0x7f1cbb07de40 - __libc_start_main [INFO] [stderr] 35: 0x55de296a8f55 - _start [INFO] [stderr] 36: 0x0 - [INFO] running `Command { std: "docker" "inspect" "4098f489656f71cb5dbd9146d4d2195adbcc20a7f0541f7a5e3659808845c8eb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4098f489656f71cb5dbd9146d4d2195adbcc20a7f0541f7a5e3659808845c8eb", kill_on_drop: false }` [INFO] [stdout] 4098f489656f71cb5dbd9146d4d2195adbcc20a7f0541f7a5e3659808845c8eb [INFO] checking hts-0.1.18 against try#dae34b759e282c069aa28752564694effd121a63 for pr-125384 [INFO] extracting crate hts 0.1.18 into /workspace/builds/worker-6-tc2/source [INFO] validating manifest of crates.io crate hts 0.1.18 on toolchain dae34b759e282c069aa28752564694effd121a63 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dae34b759e282c069aa28752564694effd121a63" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hts 0.1.18 [INFO] finished tweaking crates.io crate hts 0.1.18 [INFO] tweaked toml for crates.io crate hts 0.1.18 written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] crate crates.io crate hts 0.1.18 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dae34b759e282c069aa28752564694effd121a63" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+dae34b759e282c069aa28752564694effd121a63" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4737427cd87b852e3cc28cd1533c99c79f0dafe445d0b572d3396eccd70bb672 [INFO] running `Command { std: "docker" "start" "-a" "4737427cd87b852e3cc28cd1533c99c79f0dafe445d0b572d3396eccd70bb672", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4737427cd87b852e3cc28cd1533c99c79f0dafe445d0b572d3396eccd70bb672", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4737427cd87b852e3cc28cd1533c99c79f0dafe445d0b572d3396eccd70bb672", kill_on_drop: false }` [INFO] [stdout] 4737427cd87b852e3cc28cd1533c99c79f0dafe445d0b572d3396eccd70bb672 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+dae34b759e282c069aa28752564694effd121a63" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b41951d7877c221498ea955849a8c040e23f49b6eed520f68b22f5d168bbccc6 [INFO] running `Command { std: "docker" "start" "-a" "b41951d7877c221498ea955849a8c040e23f49b6eed520f68b22f5d168bbccc6", kill_on_drop: false }` [INFO] [stderr] Copying to /tmp/fixit [INFO] [stderr] skipping non-2021 edition `2018` [INFO] running `Command { std: "docker" "inspect" "b41951d7877c221498ea955849a8c040e23f49b6eed520f68b22f5d168bbccc6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b41951d7877c221498ea955849a8c040e23f49b6eed520f68b22f5d168bbccc6", kill_on_drop: false }` [INFO] [stdout] b41951d7877c221498ea955849a8c040e23f49b6eed520f68b22f5d168bbccc6