[INFO] cloning repository https://github.com/joel-simon/threaded_fastaq_ngrams [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/joel-simon/threaded_fastaq_ngrams" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoel-simon%2Fthreaded_fastaq_ngrams", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoel-simon%2Fthreaded_fastaq_ngrams'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 7641d92a28637de9ef43de48eee048f0e4863994 [INFO] checking joel-simon/threaded_fastaq_ngrams against master#506512391b1a75ae450d36c9420978402a91abcc for pr-125384 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoel-simon%2Fthreaded_fastaq_ngrams" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/joel-simon/threaded_fastaq_ngrams on toolchain 506512391b1a75ae450d36c9420978402a91abcc [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/joel-simon/threaded_fastaq_ngrams [INFO] finished tweaking git repo https://github.com/joel-simon/threaded_fastaq_ngrams [INFO] tweaked toml for git repo https://github.com/joel-simon/threaded_fastaq_ngrams written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/joel-simon/threaded_fastaq_ngrams already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:beeedbb442662e57d416641ecc3200b38e573c25b057896194468d05594dd835" "/opt/rustwide/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b7de62e918fbb42c589a29a187a2d1c05fcda57a5b4975271018eee05816fe50 [INFO] running `Command { std: "docker" "start" "-a" "b7de62e918fbb42c589a29a187a2d1c05fcda57a5b4975271018eee05816fe50", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b7de62e918fbb42c589a29a187a2d1c05fcda57a5b4975271018eee05816fe50", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b7de62e918fbb42c589a29a187a2d1c05fcda57a5b4975271018eee05816fe50", kill_on_drop: false }` [INFO] [stdout] b7de62e918fbb42c589a29a187a2d1c05fcda57a5b4975271018eee05816fe50 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:beeedbb442662e57d416641ecc3200b38e573c25b057896194468d05594dd835" "/opt/rustwide/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d37f409814e503fa146d40140eeb25060709a0c0e3d1843ec4d6e6460846f887 [INFO] running `Command { std: "docker" "start" "-a" "d37f409814e503fa146d40140eeb25060709a0c0e3d1843ec4d6e6460846f887", kill_on_drop: false }` [INFO] [stderr] Checking concurrent_ngrams v0.0.1 (/opt/rustwide/workdir) [INFO] [stdout] error[E0432]: unresolved import `std::old_io` [INFO] [stdout] --> src/main.rs:8:10 [INFO] [stdout] | [INFO] [stdout] 8 | use std::old_io::File; [INFO] [stdout] | ^^^^^^ could not find `old_io` in `std` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `std::old_io` [INFO] [stdout] --> src/main.rs:8:10 [INFO] [stdout] | [INFO] [stdout] 8 | use std::old_io::File; [INFO] [stdout] | ^^^^^^ could not find `old_io` in `std` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `std::old_io` [INFO] [stdout] --> src/main.rs:10:10 [INFO] [stdout] | [INFO] [stdout] 10 | use std::old_io::BufferedReader; [INFO] [stdout] | ^^^^^^ could not find `old_io` in `std` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `std::old_io` [INFO] [stdout] --> src/main.rs:10:10 [INFO] [stdout] | [INFO] [stdout] 10 | use std::old_io::BufferedReader; [INFO] [stdout] | ^^^^^^ could not find `old_io` in `std` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Path` [INFO] [stdout] --> src/main.rs:45:14 [INFO] [stdout] | [INFO] [stdout] 45 | let path = Path::new("/Users/joelsimon/Documents/Immufind/SequenceAnalysis/data/HD3_IgG1sorted_S1_L001_I1_001.fastq".to_string()); [INFO] [stdout] | ^^^^ use of undeclared type `Path` [INFO] [stdout] | [INFO] [stdout] help: consider importing this struct [INFO] [stdout] | [INFO] [stdout] 4 + use std::path::Path; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Path` [INFO] [stdout] --> src/main.rs:45:14 [INFO] [stdout] | [INFO] [stdout] 45 | let path = Path::new("/Users/joelsimon/Documents/Immufind/SequenceAnalysis/data/HD3_IgG1sorted_S1_L001_I1_001.fastq".to_string()); [INFO] [stdout] | ^^^^ use of undeclared type `Path` [INFO] [stdout] | [INFO] [stdout] help: consider importing this struct [INFO] [stdout] | [INFO] [stdout] 4 + use std::path::Path; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0635]: unknown feature `std_misc` [INFO] [stdout] --> src/main.rs:1:12 [INFO] [stdout] | [INFO] [stdout] 1 | #![feature(std_misc)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0635]: unknown feature `std_misc` [INFO] [stdout] --> src/main.rs:1:12 [INFO] [stdout] | [INFO] [stdout] 1 | #![feature(std_misc)] [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no function or associated item named `spawn` found for struct `Thread` in the current scope [INFO] [stdout] --> src/main.rs:27:13 [INFO] [stdout] | [INFO] [stdout] 27 | Thread::spawn(move || { [INFO] [stdout] | ^^^^^ function or associated item not found in `Thread` [INFO] [stdout] | [INFO] [stdout] note: if you're trying to build a new `Thread` consider using one of the following associated functions: [INFO] [stdout] Thread::new [INFO] [stdout] Thread::new_unnamed [INFO] [stdout] Thread::new_main [INFO] [stdout] Thread::new_inner [INFO] [stdout] --> /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/thread/mod.rs:1321:5 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0599]: no function or associated item named `spawn` found for struct `Thread` in the current scope [INFO] [stdout] --> src/main.rs:27:13 [INFO] [stdout] | [INFO] [stdout] 27 | Thread::spawn(move || { [INFO] [stdout] | ^^^^^ function or associated item not found in `Thread` [INFO] [stdout] | [INFO] [stdout] note: if you're trying to build a new `Thread` consider using one of the following associated functions: [INFO] [stdout] Thread::new [INFO] [stdout] Thread::new_unnamed [INFO] [stdout] Thread::new_main [INFO] [stdout] Thread::new_inner [INFO] [stdout] --> /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/thread/mod.rs:1321:5 [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 5 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433, E0599, E0635. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error: aborting due to 5 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433, E0599, E0635. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stderr] error: could not compile `concurrent_ngrams` (bin "concurrent_ngrams") due to 6 previous errors [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: could not compile `concurrent_ngrams` (bin "concurrent_ngrams" test) due to 6 previous errors [INFO] running `Command { std: "docker" "inspect" "d37f409814e503fa146d40140eeb25060709a0c0e3d1843ec4d6e6460846f887", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d37f409814e503fa146d40140eeb25060709a0c0e3d1843ec4d6e6460846f887", kill_on_drop: false }` [INFO] [stdout] d37f409814e503fa146d40140eeb25060709a0c0e3d1843ec4d6e6460846f887 [INFO] checking joel-simon/threaded_fastaq_ngrams against try#dae34b759e282c069aa28752564694effd121a63 for pr-125384 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoel-simon%2Fthreaded_fastaq_ngrams" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/joel-simon/threaded_fastaq_ngrams on toolchain dae34b759e282c069aa28752564694effd121a63 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dae34b759e282c069aa28752564694effd121a63" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/joel-simon/threaded_fastaq_ngrams [INFO] finished tweaking git repo https://github.com/joel-simon/threaded_fastaq_ngrams [INFO] tweaked toml for git repo https://github.com/joel-simon/threaded_fastaq_ngrams written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/joel-simon/threaded_fastaq_ngrams already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dae34b759e282c069aa28752564694effd121a63" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:beeedbb442662e57d416641ecc3200b38e573c25b057896194468d05594dd835" "/opt/rustwide/cargo-home/bin/cargo" "+dae34b759e282c069aa28752564694effd121a63" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 25046d6b90f5f8f16d4567a9d7fea552fed8ce53cecb0a7a635c0a2b5399f276 [INFO] running `Command { std: "docker" "start" "-a" "25046d6b90f5f8f16d4567a9d7fea552fed8ce53cecb0a7a635c0a2b5399f276", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "25046d6b90f5f8f16d4567a9d7fea552fed8ce53cecb0a7a635c0a2b5399f276", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "25046d6b90f5f8f16d4567a9d7fea552fed8ce53cecb0a7a635c0a2b5399f276", kill_on_drop: false }` [INFO] [stdout] 25046d6b90f5f8f16d4567a9d7fea552fed8ce53cecb0a7a635c0a2b5399f276 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:beeedbb442662e57d416641ecc3200b38e573c25b057896194468d05594dd835" "/opt/rustwide/cargo-home/bin/cargo" "+dae34b759e282c069aa28752564694effd121a63" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 313bd4eb0c8252b4b1948b1b99162132704ee0ffe5a9d41f396c691c5e5d70cb [INFO] running `Command { std: "docker" "start" "-a" "313bd4eb0c8252b4b1948b1b99162132704ee0ffe5a9d41f396c691c5e5d70cb", kill_on_drop: false }` [INFO] [stderr] Copying to /tmp/fixit [INFO] [stderr] no edition found in manifest, probably 2015, skipping [INFO] running `Command { std: "docker" "inspect" "313bd4eb0c8252b4b1948b1b99162132704ee0ffe5a9d41f396c691c5e5d70cb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "313bd4eb0c8252b4b1948b1b99162132704ee0ffe5a9d41f396c691c5e5d70cb", kill_on_drop: false }` [INFO] [stdout] 313bd4eb0c8252b4b1948b1b99162132704ee0ffe5a9d41f396c691c5e5d70cb