[INFO] fetching crate openmm-sys 7.4.1... [INFO] checking openmm-sys-7.4.1 against master#506512391b1a75ae450d36c9420978402a91abcc for pr-125384 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-2-tc1/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 506512391b1a75ae450d36c9420978402a91abcc [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cmake v0.1.44 [INFO] [stderr] Downloaded cc v1.0.59 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 82b3585a2f578d446466d376be5449006ab2627bbc5d43bd094b825a47ee425f [INFO] running `Command { std: "docker" "start" "-a" "82b3585a2f578d446466d376be5449006ab2627bbc5d43bd094b825a47ee425f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "82b3585a2f578d446466d376be5449006ab2627bbc5d43bd094b825a47ee425f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "82b3585a2f578d446466d376be5449006ab2627bbc5d43bd094b825a47ee425f", kill_on_drop: false }` [INFO] [stdout] 82b3585a2f578d446466d376be5449006ab2627bbc5d43bd094b825a47ee425f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 938b6d8678000358bbda85e1c22f5c242a4a6033ddb963c5f50a161e4fbb8c7a [INFO] running `Command { std: "docker" "start" "-a" "938b6d8678000358bbda85e1c22f5c242a4a6033ddb963c5f50a161e4fbb8c7a", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: openmm-sys@7.4.1: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-19b915e701087451/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/openmm-sys-0fd3f735f525d066/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-0fd3f735f525d066/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python3.10 (found version "3.10.12") [INFO] [stderr] -- The C compiler identification is GNU 11.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 11.4.0 [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-0fd3f735f525d066/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:230 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.22/Modules/FindDoxygen.cmake:646 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.44/src/lib.rs:885:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x558f0ff373f5 - ::fmt::hb19a1068483db389 [INFO] [stderr] 1: 0x558f0ff5c80b - core::fmt::write::h93b97d526ac83ab7 [INFO] [stderr] 2: 0x558f0ff3455f - std::io::Write::write_fmt::h5b8b8a434bcca5dd [INFO] [stderr] 3: 0x558f0ff371ce - std::sys_common::backtrace::print::h9c98f0d9c4306586 [INFO] [stderr] 4: 0x558f0ff38759 - std::panicking::default_hook::{{closure}}::hcf6830dc400daae4 [INFO] [stderr] 5: 0x558f0ff3849d - std::panicking::default_hook::h483615856e3a5cc0 [INFO] [stderr] 6: 0x558f0ff38c63 - std::panicking::rust_panic_with_hook::h36ebc998f351e5fd [INFO] [stderr] 7: 0x558f0ff38b44 - std::panicking::begin_panic_handler::{{closure}}::h686207a93492b797 [INFO] [stderr] 8: 0x558f0ff378b9 - std::sys_common::backtrace::__rust_end_short_backtrace::h2e37e6bf5aac538a [INFO] [stderr] 9: 0x558f0ff38877 - rust_begin_unwind [INFO] [stderr] 10: 0x558f0ff5b593 - core::panicking::panic_fmt::heae5d8e5e3703b89 [INFO] [stderr] 11: 0x558f0fedcc89 - cmake::fail::h176721a42a20a283 [INFO] [stderr] 12: 0x558f0fedc3c8 - cmake::run::hd1a49d4be6122df3 [INFO] [stderr] 13: 0x558f0fed89b7 - cmake::Config::build::hc72763d0625a12ad [INFO] [stderr] 14: 0x558f0fed3993 - build_script_build::main::h8359a6884e4ffa31 [INFO] [stderr] 15: 0x558f0fececa3 - core::ops::function::FnOnce::call_once::hf59aed302948c833 [INFO] [stderr] 16: 0x558f0fece266 - std::sys_common::backtrace::__rust_begin_short_backtrace::h0d87fd68c2c75923 [INFO] [stderr] 17: 0x558f0fece529 - std::rt::lang_start::{{closure}}::h361a1203145d0261 [INFO] [stderr] 18: 0x558f0ff3045d - std::rt::lang_start_internal::hf560e7575b65e65f [INFO] [stderr] 19: 0x558f0fece507 - std::rt::lang_start::h5f30ce51d557eacb [INFO] [stderr] 20: 0x558f0fed3e65 - main [INFO] [stderr] 21: 0x7fcb55e3dd90 - [INFO] [stderr] 22: 0x7fcb55e3de40 - __libc_start_main [INFO] [stderr] 23: 0x558f0fece155 - _start [INFO] [stderr] 24: 0x0 - [INFO] running `Command { std: "docker" "inspect" "938b6d8678000358bbda85e1c22f5c242a4a6033ddb963c5f50a161e4fbb8c7a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "938b6d8678000358bbda85e1c22f5c242a4a6033ddb963c5f50a161e4fbb8c7a", kill_on_drop: false }` [INFO] [stdout] 938b6d8678000358bbda85e1c22f5c242a4a6033ddb963c5f50a161e4fbb8c7a