[INFO] cloning repository https://github.com/nielsdos/FGS.rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/nielsdos/FGS.rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnielsdos%2FFGS.rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnielsdos%2FFGS.rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] f00dfd927c76d63db1b32e9638807252b3bb975d [INFO] checking nielsdos/FGS.rs against master#506512391b1a75ae450d36c9420978402a91abcc for pr-125384 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnielsdos%2FFGS.rs" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/nielsdos/FGS.rs on toolchain 506512391b1a75ae450d36c9420978402a91abcc [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/nielsdos/FGS.rs [INFO] finished tweaking git repo https://github.com/nielsdos/FGS.rs [INFO] tweaked toml for git repo https://github.com/nielsdos/FGS.rs written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/nielsdos/FGS.rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded snafu v0.6.8 [INFO] [stderr] Downloaded getset v0.0.9 [INFO] [stderr] Downloaded multimap v0.6.0 [INFO] [stderr] Downloaded bit-vec v0.6.2 [INFO] [stderr] Downloaded snafu-derive v0.6.8 [INFO] [stderr] Downloaded bio-types v0.6.0 [INFO] [stderr] Downloaded statrs v0.12.0 [INFO] [stderr] Downloaded bio v0.30.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:beeedbb442662e57d416641ecc3200b38e573c25b057896194468d05594dd835" "/opt/rustwide/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d3fe6b678b20c9bdbf7c67def95be3c324c69a660518857df0300f10486c9d20 [INFO] running `Command { std: "docker" "start" "-a" "d3fe6b678b20c9bdbf7c67def95be3c324c69a660518857df0300f10486c9d20", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d3fe6b678b20c9bdbf7c67def95be3c324c69a660518857df0300f10486c9d20", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d3fe6b678b20c9bdbf7c67def95be3c324c69a660518857df0300f10486c9d20", kill_on_drop: false }` [INFO] [stdout] d3fe6b678b20c9bdbf7c67def95be3c324c69a660518857df0300f10486c9d20 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:beeedbb442662e57d416641ecc3200b38e573c25b057896194468d05594dd835" "/opt/rustwide/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 636fa78d550ce42196b5a7565e5914288d46cd621125cdc7d6e2e674959ed9a2 [INFO] running `Command { std: "docker" "start" "-a" "636fa78d550ce42196b5a7565e5914288d46cd621125cdc7d6e2e674959ed9a2", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling proc-macro2 v1.0.18 [INFO] [stderr] Compiling syn v1.0.31 [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling serde v1.0.111 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.2 [INFO] [stderr] Compiling proc-macro-error v1.0.2 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking ppv-lite86 v0.2.8 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking unicode-width v0.1.7 [INFO] [stderr] Checking regex-syntax v0.6.18 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling rayon-core v1.7.0 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking ordermap v0.3.5 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.4 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Checking aho-corasick v0.7.10 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking fixedbitset v0.1.9 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking itoa v0.4.5 [INFO] [stderr] Checking bit-vec v0.6.2 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Compiling bio v0.30.1 [INFO] [stderr] Checking petgraph v0.4.13 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Checking fnv v1.0.7 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking bytecount v0.6.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking crossbeam-queue v0.2.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.0.2 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Compiling syn-mid v0.5.0 [INFO] [stderr] Compiling serde_derive v1.0.111 [INFO] [stderr] Compiling snafu-derive v0.6.8 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling structopt-derive v0.4.7 [INFO] [stderr] Checking snafu v0.6.8 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bstr v0.2.13 [INFO] [stderr] Checking multimap v0.6.0 [INFO] [stderr] Checking bio-types v0.6.0 [INFO] [stderr] Checking clap v2.33.1 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking structopt v0.3.14 [INFO] [stderr] Checking compbio v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] error[E0521]: borrowed data escapes outside of closure [INFO] [stdout] --> src/backtrack.rs:91:65 [INFO] [stdout] | [INFO] [stdout] 58 | let is_not_stop_codon = |codon| { [INFO] [stdout] | ----------------- `is_not_stop_codon` declared here, outside of the closure body [INFO] [stdout] ... [INFO] [stdout] 83 | iterator: Box + '_>| [INFO] [stdout] | -------- `iterator` is a reference that is only valid in the closure body [INFO] [stdout] ... [INFO] [stdout] 91 | (35..=self.seq.len() - 35).contains(off) && is_not_stop_codon(*codon) [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ `iterator` escapes the closure body here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0521]: borrowed data escapes outside of closure [INFO] [stdout] --> src/backtrack.rs:91:65 [INFO] [stdout] | [INFO] [stdout] 58 | let is_not_stop_codon = |codon| { [INFO] [stdout] | ----------------- `is_not_stop_codon` declared here, outside of the closure body [INFO] [stdout] ... [INFO] [stdout] 83 | iterator: Box + '_>| [INFO] [stdout] | -------- `iterator` is a reference that is only valid in the closure body [INFO] [stdout] ... [INFO] [stdout] 91 | (35..=self.seq.len() - 35).contains(off) && is_not_stop_codon(*codon) [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ `iterator` escapes the closure body here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0521`. [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0521`. [INFO] [stdout] [INFO] [stderr] error: could not compile `compbio` (bin "compbio") due to 2 previous errors [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: could not compile `compbio` (bin "compbio" test) due to 2 previous errors [INFO] running `Command { std: "docker" "inspect" "636fa78d550ce42196b5a7565e5914288d46cd621125cdc7d6e2e674959ed9a2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "636fa78d550ce42196b5a7565e5914288d46cd621125cdc7d6e2e674959ed9a2", kill_on_drop: false }` [INFO] [stdout] 636fa78d550ce42196b5a7565e5914288d46cd621125cdc7d6e2e674959ed9a2