[INFO] cloning repository https://github.com/femshima/htsengine-rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/femshima/htsengine-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffemshima%2Fhtsengine-rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffemshima%2Fhtsengine-rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 647406b76a3d0e53a52215b86297d29492d455b1 [INFO] checking femshima/htsengine-rs against master#506512391b1a75ae450d36c9420978402a91abcc for pr-125384 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffemshima%2Fhtsengine-rs" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/femshima/htsengine-rs on toolchain 506512391b1a75ae450d36c9420978402a91abcc [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/femshima/htsengine-rs [INFO] finished tweaking git repo https://github.com/femshima/htsengine-rs [INFO] tweaked toml for git repo https://github.com/femshima/htsengine-rs written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/femshima/htsengine-rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ff72226ebb246f491665c1fffb308a5646d99bcffafeb0c9221309c00aa86e97 [INFO] running `Command { std: "docker" "start" "-a" "ff72226ebb246f491665c1fffb308a5646d99bcffafeb0c9221309c00aa86e97", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ff72226ebb246f491665c1fffb308a5646d99bcffafeb0c9221309c00aa86e97", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ff72226ebb246f491665c1fffb308a5646d99bcffafeb0c9221309c00aa86e97", kill_on_drop: false }` [INFO] [stdout] ff72226ebb246f491665c1fffb308a5646d99bcffafeb0c9221309c00aa86e97 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+506512391b1a75ae450d36c9420978402a91abcc" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 34328628df003a272488f0fea6f73c458fc6cf2ab13fed1001eec004155c2b7d [INFO] running `Command { std: "docker" "start" "-a" "34328628df003a272488f0fea6f73c458fc6cf2ab13fed1001eec004155c2b7d", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.69 [INFO] [stderr] Compiling libc v0.2.149 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling prettyplease v0.2.15 [INFO] [stderr] Compiling rustix v0.38.19 [INFO] [stderr] Compiling memchr v2.6.4 [INFO] [stderr] Compiling bitflags v2.4.1 [INFO] [stderr] Compiling linux-raw-sys v0.4.10 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling clang-sys v1.6.1 [INFO] [stderr] Compiling libloading v0.7.4 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling bindgen v0.68.1 [INFO] [stderr] Compiling either v1.9.0 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling home v0.5.5 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling syn v2.0.38 [INFO] [stderr] Compiling cc v1.0.83 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v1.2.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling log v0.4.20 [INFO] [stderr] Compiling thiserror v1.0.49 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling regex-automata v0.4.3 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling regex v1.10.2 [INFO] [stderr] Compiling thiserror-impl v1.0.49 [INFO] [stderr] Compiling htsengine-sys v0.0.1 (/opt/rustwide/workdir/crates/htsengine-sys) [INFO] [stderr] error: failed to run custom build command for `htsengine-sys v0.0.1 (/opt/rustwide/workdir/crates/htsengine-sys)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/htsengine-sys-c99b0e11f2271724/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE = None [INFO] [stderr] CMAKE = None [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/htsengine-sys-12f1206177bc35db/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/crates/htsengine-sys/htsengine" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/htsengine-sys-12f1206177bc35db/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- The C compiler identification is GNU 11.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 11.4.0 [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/htsengine-sys-12f1206177bc35db/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [ 11%] Creating directories for 'htsengine-populate' [INFO] [stderr] [ 22%] Performing download step (git clone) for 'htsengine-populate' [INFO] [stderr] Cloning into 'htsengine-src'... [INFO] [stderr] fatal: unable to access 'https://github.com/r9y9/hts_engine_API.git/': Could not resolve host: github.com [INFO] [stderr] Cloning into 'htsengine-src'... [INFO] [stderr] fatal: unable to access 'https://github.com/r9y9/hts_engine_API.git/': Could not resolve host: github.com [INFO] [stderr] Cloning into 'htsengine-src'... [INFO] [stderr] fatal: unable to access 'https://github.com/r9y9/hts_engine_API.git/': Could not resolve host: github.com [INFO] [stderr] -- Had to git clone more than once: [INFO] [stderr] 3 times. [INFO] [stderr] CMake Error at htsengine-subbuild/htsengine-populate-prefix/tmp/htsengine-populate-gitclone.cmake:31 (message): [INFO] [stderr] Failed to clone repository: 'https://github.com/r9y9/hts_engine_API.git' [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] gmake[2]: *** [CMakeFiles/htsengine-populate.dir/build.make:102: htsengine-populate-prefix/src/htsengine-populate-stamp/htsengine-populate-download] Error 1 [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:83: CMakeFiles/htsengine-populate.dir/all] Error 2 [INFO] [stderr] gmake: *** [Makefile:91: all] Error 2 [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.22/Modules/FetchContent.cmake:1087 (message): [INFO] [stderr] Build step for htsengine failed: 2 [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.22/Modules/FetchContent.cmake:1216:EVAL:2 (__FetchContent_directPopulate) [INFO] [stderr] /usr/share/cmake-3.22/Modules/FetchContent.cmake:1216 (cmake_language) [INFO] [stderr] /usr/share/cmake-3.22/Modules/FetchContent.cmake:1259 (FetchContent_Populate) [INFO] [stderr] CMakeLists.txt:10 (FetchContent_MakeAvailable) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.50/src/lib.rs:1098:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55cc64c2dcd5 - std::backtrace_rs::backtrace::libunwind::trace::h876d7c806a499a4c [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/../../backtrace/src/backtrace/libunwind.rs:105:5 [INFO] [stderr] 1: 0x55cc64c2dcd5 - std::backtrace_rs::backtrace::trace_unsynchronized::h93aa6ac20204363f [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55cc64c2dcd5 - std::sys_common::backtrace::_print_fmt::haa4d06348037420c [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/sys_common/backtrace.rs:68:5 [INFO] [stderr] 3: 0x55cc64c2dcd5 - ::fmt::hb19a1068483db389 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/sys_common/backtrace.rs:44:22 [INFO] [stderr] 4: 0x55cc64c52b8b - core::fmt::rt::Argument::fmt::he1186800a1f8dba1 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/core/src/fmt/rt.rs:165:63 [INFO] [stderr] 5: 0x55cc64c52b8b - core::fmt::write::h93b97d526ac83ab7 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/core/src/fmt/mod.rs:1169:21 [INFO] [stderr] 6: 0x55cc64c2addf - std::io::Write::write_fmt::h5b8b8a434bcca5dd [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/io/mod.rs:1835:15 [INFO] [stderr] 7: 0x55cc64c2daae - std::sys_common::backtrace::_print::h68eb04d9824256f0 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/sys_common/backtrace.rs:47:5 [INFO] [stderr] 8: 0x55cc64c2daae - std::sys_common::backtrace::print::h9c98f0d9c4306586 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/sys_common/backtrace.rs:34:9 [INFO] [stderr] 9: 0x55cc64c2f039 - std::panicking::default_hook::{{closure}}::hcf6830dc400daae4 [INFO] [stderr] 10: 0x55cc64c2ed7d - std::panicking::default_hook::h483615856e3a5cc0 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:298:9 [INFO] [stderr] 11: 0x55cc64c2f543 - std::panicking::rust_panic_with_hook::h36ebc998f351e5fd [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:795:13 [INFO] [stderr] 12: 0x55cc64c2f424 - std::panicking::begin_panic_handler::{{closure}}::h686207a93492b797 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:664:13 [INFO] [stderr] 13: 0x55cc64c2e199 - std::sys_common::backtrace::__rust_end_short_backtrace::h2e37e6bf5aac538a [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/sys_common/backtrace.rs:171:18 [INFO] [stderr] 14: 0x55cc64c2f157 - rust_begin_unwind [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:652:5 [INFO] [stderr] 15: 0x55cc64c51913 - core::panicking::panic_fmt::heae5d8e5e3703b89 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/core/src/panicking.rs:72:14 [INFO] [stderr] 16: 0x55cc64bc7579 - cmake::fail::h2f6bbe03d592c28a [INFO] [stderr] 17: 0x55cc64bc6d58 - cmake::run::h2e291e81da7ac7b8 [INFO] [stderr] 18: 0x55cc64bc2f23 - cmake::Config::build::h3f3095e09f897a8d [INFO] [stderr] 19: 0x55cc64bb2a99 - build_script_build::main::h7c91be39952d43bc [INFO] [stderr] 20: 0x55cc64bb12f3 - core::ops::function::FnOnce::call_once::h9736a9bdef0d90a2 [INFO] [stderr] 21: 0x55cc64bb0ed6 - std::sys_common::backtrace::__rust_begin_short_backtrace::hf6068e9465973df9 [INFO] [stderr] 22: 0x55cc64bb0fe9 - std::rt::lang_start::{{closure}}::h2f738c19dc01421e [INFO] [stderr] 23: 0x55cc64c26bdd - core::ops::function::impls:: for &F>::call_once::h75d0a4fe40296b94 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 24: 0x55cc64c26bdd - std::panicking::try::do_call::ha27ca65264b021a4 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:559:40 [INFO] [stderr] 25: 0x55cc64c26bdd - std::panicking::try::h901e100a17b3cd54 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:523:19 [INFO] [stderr] 26: 0x55cc64c26bdd - std::panic::catch_unwind::h13d256f1691dfb07 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panic.rs:149:14 [INFO] [stderr] 27: 0x55cc64c26bdd - std::rt::lang_start_internal::{{closure}}::hdf5a5a26190e1fd8 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/rt.rs:141:48 [INFO] [stderr] 28: 0x55cc64c26bdd - std::panicking::try::do_call::h3a8fb98242ec30e5 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:559:40 [INFO] [stderr] 29: 0x55cc64c26bdd - std::panicking::try::h881801cd3cb8ba77 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panicking.rs:523:19 [INFO] [stderr] 30: 0x55cc64c26bdd - std::panic::catch_unwind::he14d380083644433 [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/panic.rs:149:14 [INFO] [stderr] 31: 0x55cc64c26bdd - std::rt::lang_start_internal::hf560e7575b65e65f [INFO] [stderr] at /rustc/506512391b1a75ae450d36c9420978402a91abcc/library/std/src/rt.rs:141:20 [INFO] [stderr] 32: 0x55cc64bb0fc7 - std::rt::lang_start::h0ff79337ccbaf076 [INFO] [stderr] 33: 0x55cc64bb2e35 - main [INFO] [stderr] 34: 0x7f909f33ad90 - [INFO] [stderr] 35: 0x7f909f33ae40 - __libc_start_main [INFO] [stderr] 36: 0x55cc64bb0dc5 - _start [INFO] [stderr] 37: 0x0 - [INFO] running `Command { std: "docker" "inspect" "34328628df003a272488f0fea6f73c458fc6cf2ab13fed1001eec004155c2b7d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "34328628df003a272488f0fea6f73c458fc6cf2ab13fed1001eec004155c2b7d", kill_on_drop: false }` [INFO] [stdout] 34328628df003a272488f0fea6f73c458fc6cf2ab13fed1001eec004155c2b7d