[INFO] fetching crate slow5lib-sys 0.9.1+slow5lib.1.1.0... [INFO] checking slow5lib-sys-0.9.1+slow5lib.1.1.0 against master#91c0823ee63e793d990bb9fed898dc95b5d6db51 for pr-125384-2 [INFO] extracting crate slow5lib-sys 0.9.1+slow5lib.1.1.0 into /workspace/builds/worker-7-tc1/source [INFO] validating manifest of crates.io crate slow5lib-sys 0.9.1+slow5lib.1.1.0 on toolchain 91c0823ee63e793d990bb9fed898dc95b5d6db51 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate slow5lib-sys 0.9.1+slow5lib.1.1.0 [INFO] finished tweaking crates.io crate slow5lib-sys 0.9.1+slow5lib.1.1.0 [INFO] tweaked toml for crates.io crate slow5lib-sys 0.9.1+slow5lib.1.1.0 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] crate crates.io crate slow5lib-sys 0.9.1+slow5lib.1.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cc v1.0.79 [INFO] [stderr] Downloaded percent-encoding v2.2.0 [INFO] [stderr] Downloaded jobserver v0.1.25 [INFO] [stderr] Downloaded version-sync v0.9.4 [INFO] [stderr] Downloaded shlex v1.1.0 [INFO] [stderr] Downloaded cstr v0.2.11 [INFO] [stderr] Downloaded either v1.8.0 [INFO] [stderr] Downloaded clang-sys v1.4.0 [INFO] [stderr] Downloaded which v4.3.0 [INFO] [stderr] Downloaded prettyplease v0.2.15 [INFO] [stderr] Downloaded nom v7.1.1 [INFO] [stderr] Downloaded regex-syntax v0.6.28 [INFO] [stderr] Downloaded libc v0.2.137 [INFO] [stderr] Downloaded zstd-sys v2.0.7+zstd.1.5.4 [INFO] [stderr] Downloaded bindgen v0.66.1 [INFO] [stderr] Downloaded once_cell v1.16.0 [INFO] [stderr] Downloaded pulldown-cmark v0.8.0 [INFO] [stderr] Downloaded regex v1.7.0 [INFO] [stderr] Downloaded semver v1.0.14 [INFO] [stderr] Downloaded syn v1.0.103 [INFO] [stderr] Downloaded toml v0.5.9 [INFO] [stderr] Downloaded url v2.3.1 [INFO] [stderr] Downloaded unicase v2.6.0 [INFO] [stderr] Downloaded libz-sys v1.1.8 [INFO] [stderr] Downloaded unicode-ident v1.0.5 [INFO] [stderr] Downloaded form_urlencoded v1.1.0 [INFO] [stderr] Downloaded unicode-bidi v0.3.8 [INFO] [stderr] Downloaded dunce v1.0.3 [INFO] [stderr] Downloaded pkg-config v0.3.26 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e3e8ccbfbc296e6935f809db1fbb00ffc536f408633073f0d58c9a946cdba179 [INFO] running `Command { std: "docker" "start" "-a" "e3e8ccbfbc296e6935f809db1fbb00ffc536f408633073f0d58c9a946cdba179", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e3e8ccbfbc296e6935f809db1fbb00ffc536f408633073f0d58c9a946cdba179", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e3e8ccbfbc296e6935f809db1fbb00ffc536f408633073f0d58c9a946cdba179", kill_on_drop: false }` [INFO] [stdout] e3e8ccbfbc296e6935f809db1fbb00ffc536f408633073f0d58c9a946cdba179 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d19bd4821364d080809fdbcb6f0e85f44f95a0b058310a933449d2450d8b3ddf [INFO] running `Command { std: "docker" "start" "-a" "d19bd4821364d080809fdbcb6f0e85f44f95a0b058310a933449d2450d8b3ddf", kill_on_drop: false }` [INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] [stderr] Compiling libc v0.2.137 [INFO] [stderr] Compiling proc-macro2 v1.0.66 [INFO] [stderr] Compiling unicode-ident v1.0.5 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling pkg-config v0.3.26 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling prettyplease v0.2.15 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling libloading v0.7.4 [INFO] [stderr] Compiling bindgen v0.66.1 [INFO] [stderr] Compiling either v1.8.0 [INFO] [stderr] Compiling regex-syntax v0.6.28 [INFO] [stderr] Checking tinyvec_macros v0.1.0 [INFO] [stderr] Compiling unicase v2.6.0 [INFO] [stderr] Checking tinyvec v1.6.0 [INFO] [stderr] Compiling clang-sys v1.4.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling serde v1.0.188 [INFO] [stderr] Compiling nom v7.1.1 [INFO] [stderr] Compiling jobserver v0.1.25 [INFO] [stderr] Compiling syn v2.0.31 [INFO] [stderr] Compiling which v4.3.0 [INFO] [stderr] Compiling shlex v1.1.0 [INFO] [stderr] Compiling cc v1.0.79 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling bitflags v2.4.0 [INFO] [stderr] Checking unicode-normalization v0.1.22 [INFO] [stderr] Compiling semver v1.0.14 [INFO] [stderr] Checking unicode-bidi v0.3.8 [INFO] [stderr] Compiling dunce v1.0.3 [INFO] [stderr] Compiling syn v1.0.103 [INFO] [stderr] Checking percent-encoding v2.2.0 [INFO] [stderr] Compiling pulldown-cmark v0.8.0 [INFO] [stderr] Checking form_urlencoded v1.1.0 [INFO] [stderr] Checking idna v0.3.0 [INFO] [stderr] Compiling zstd-sys v2.0.7+zstd.1.5.4 [INFO] [stderr] Compiling regex v1.7.0 [INFO] [stderr] Compiling libz-sys v1.1.8 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Checking url v2.3.1 [INFO] [stderr] Compiling cstr v0.2.11 [INFO] [stderr] Checking toml v0.5.9 [INFO] [stderr] Checking version-sync v0.9.4 [INFO] [stderr] Compiling slow5lib-sys v0.9.1+slow5lib.1.1.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c: In function 'slow5_fwrite_compress': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 558 | if (bytes != size * nmemb || ferror(fp)) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 559 | if (bytes != size * nmemb) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c: In function 'slow5_pread_depress_solo': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 686 | if ((ret = pread(fd, raw, count, offset)) != count) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_build': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:180:20: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 180 | if(curr_offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:207:19: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 207 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:233:23: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 233 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_init': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_init_empty': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_get_mem': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c:2465:49: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 2465 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 00s [INFO] running `Command { std: "docker" "inspect" "d19bd4821364d080809fdbcb6f0e85f44f95a0b058310a933449d2450d8b3ddf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d19bd4821364d080809fdbcb6f0e85f44f95a0b058310a933449d2450d8b3ddf", kill_on_drop: false }` [INFO] [stdout] d19bd4821364d080809fdbcb6f0e85f44f95a0b058310a933449d2450d8b3ddf [INFO] checking slow5lib-sys-0.9.1+slow5lib.1.1.0 against try#519d6e23a6cb73c4d0f295f71ad37db8e95c54ab for pr-125384-2 [INFO] extracting crate slow5lib-sys 0.9.1+slow5lib.1.1.0 into /workspace/builds/worker-7-tc2/source [INFO] validating manifest of crates.io crate slow5lib-sys 0.9.1+slow5lib.1.1.0 on toolchain 519d6e23a6cb73c4d0f295f71ad37db8e95c54ab [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate slow5lib-sys 0.9.1+slow5lib.1.1.0 [INFO] finished tweaking crates.io crate slow5lib-sys 0.9.1+slow5lib.1.1.0 [INFO] tweaked toml for crates.io crate slow5lib-sys 0.9.1+slow5lib.1.1.0 written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] crate crates.io crate slow5lib-sys 0.9.1+slow5lib.1.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8c833f57f3931f09c71fcaa71fa2f50bedb9fed91f39bd48a2f6d1017dd3647c [INFO] running `Command { std: "docker" "start" "-a" "8c833f57f3931f09c71fcaa71fa2f50bedb9fed91f39bd48a2f6d1017dd3647c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8c833f57f3931f09c71fcaa71fa2f50bedb9fed91f39bd48a2f6d1017dd3647c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8c833f57f3931f09c71fcaa71fa2f50bedb9fed91f39bd48a2f6d1017dd3647c", kill_on_drop: false }` [INFO] [stdout] 8c833f57f3931f09c71fcaa71fa2f50bedb9fed91f39bd48a2f6d1017dd3647c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4b1fb01e4ce831cfa44e94f8aecfdc988f87bb7ac2b7780d3ff51eed1d598b4e [INFO] running `Command { std: "docker" "start" "-a" "4b1fb01e4ce831cfa44e94f8aecfdc988f87bb7ac2b7780d3ff51eed1d598b4e", kill_on_drop: false }` [INFO] [stderr] Copying to /tmp/fixit [INFO] [stderr] Running `cargo fix --edition` [INFO] [stderr] Migrating Cargo.toml from 2021 edition to 2024 [INFO] [stderr] Fixed Cargo.toml (1 fix) [INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] [stderr] Compiling libc v0.2.137 [INFO] [stderr] Compiling proc-macro2 v1.0.66 [INFO] [stderr] Compiling unicode-ident v1.0.5 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling pkg-config v0.3.26 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling prettyplease v0.2.15 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling libloading v0.7.4 [INFO] [stderr] Checking tinyvec_macros v0.1.0 [INFO] [stderr] Compiling either v1.8.0 [INFO] [stderr] Compiling regex-syntax v0.6.28 [INFO] [stderr] Compiling clang-sys v1.4.0 [INFO] [stderr] Compiling bindgen v0.66.1 [INFO] [stderr] Compiling unicase v2.6.0 [INFO] [stderr] Checking tinyvec v1.6.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v1.1.0 [INFO] [stderr] Compiling nom v7.1.1 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling serde v1.0.188 [INFO] [stderr] Compiling jobserver v0.1.25 [INFO] [stderr] Compiling syn v2.0.31 [INFO] [stderr] Compiling which v4.3.0 [INFO] [stderr] Compiling cc v1.0.79 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling bitflags v2.4.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Checking unicode-normalization v0.1.22 [INFO] [stderr] Checking percent-encoding v2.2.0 [INFO] [stderr] Compiling semver v1.0.14 [INFO] [stderr] Compiling syn v1.0.103 [INFO] [stderr] Compiling dunce v1.0.3 [INFO] [stderr] Compiling pulldown-cmark v0.8.0 [INFO] [stderr] Checking unicode-bidi v0.3.8 [INFO] [stderr] Checking form_urlencoded v1.1.0 [INFO] [stderr] Compiling regex v1.7.0 [INFO] [stderr] Checking idna v0.3.0 [INFO] [stderr] Compiling zstd-sys v2.0.7+zstd.1.5.4 [INFO] [stderr] Compiling libz-sys v1.1.8 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Checking url v2.3.1 [INFO] [stderr] Compiling cstr v0.2.11 [INFO] [stderr] Checking toml v0.5.9 [INFO] [stderr] Checking version-sync v0.9.4 [INFO] [stderr] Compiling slow5lib-sys v0.9.1+slow5lib.1.1.0 (/tmp/fixit) [INFO] [stderr] Migrating build.rs from 2021 edition to 2024 [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c: In function 'slow5_fwrite_compress': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 558 | if (bytes != size * nmemb || ferror(fp)) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 559 | if (bytes != size * nmemb) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c: In function 'slow5_pread_depress_solo': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 686 | if ((ret = pread(fd, raw, count, offset)) != count) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_build': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:180:20: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 180 | if(curr_offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:207:19: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 207 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:233:23: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 233 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_init': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_init_empty': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_get_mem': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c:2465:49: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 2465 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] Migrating src/lib.rs from 2021 edition to 2024 [INFO] [stderr] Migrating examples/header_attribute.rs from 2021 edition to 2024 [INFO] [stderr] Migrating examples/write.rs from 2021 edition to 2024 [INFO] [stderr] Fixed examples/write.rs (3 fixes) [INFO] [stderr] Migrating examples/random_read.rs from 2021 edition to 2024 [INFO] [stderr] Migrating tests/version.rs from 2021 edition to 2024 [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 00s [INFO] [stderr] Running `cargo check` to verify 2024 [INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] [stderr] Compiling slow5lib-sys v0.9.1+slow5lib.1.1.0 (/tmp/fixit) [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_build': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:180:20: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 180 | if(curr_offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:207:19: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 207 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:233:23: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 233 | if(offset == -1){ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_init': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_init_empty': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c: In function 'slow5_fwrite_compress': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 558 | if (bytes != size * nmemb || ferror(fp)) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 559 | if (bytes != size * nmemb) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c: In function 'slow5_pread_depress_solo': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 686 | if ((ret = pread(fd, raw, count, offset)) != count) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_get_mem': [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: slow5lib/src/slow5.c:2465:49: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: 2465 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { [INFO] [stderr] warning: slow5lib-sys@0.9.1+slow5lib.1.1.0: | ^~ [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 10.11s [INFO] running `Command { std: "docker" "inspect" "4b1fb01e4ce831cfa44e94f8aecfdc988f87bb7ac2b7780d3ff51eed1d598b4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4b1fb01e4ce831cfa44e94f8aecfdc988f87bb7ac2b7780d3ff51eed1d598b4e", kill_on_drop: false }` [INFO] [stdout] 4b1fb01e4ce831cfa44e94f8aecfdc988f87bb7ac2b7780d3ff51eed1d598b4e