[INFO] fetching crate rustybam 0.1.33...
[INFO] checking rustybam-0.1.33 against master#91c0823ee63e793d990bb9fed898dc95b5d6db51 for pr-125384-2
[INFO] extracting crate rustybam 0.1.33 into /workspace/builds/worker-3-tc1/source
[INFO] validating manifest of crates.io crate rustybam 0.1.33 on toolchain 91c0823ee63e793d990bb9fed898dc95b5d6db51
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-3-tc1/source/.cargo/config
[INFO] started tweaking crates.io crate rustybam 0.1.33
[INFO] finished tweaking crates.io crate rustybam 0.1.33
[INFO] tweaked toml for crates.io crate rustybam 0.1.33 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] crate crates.io crate rustybam 0.1.33 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: file `/workspace/builds/worker-3-tc1/source/src/main.rs` found to be present in multiple build targets:
[INFO] [stderr]   * `bin` target `rb`
[INFO] [stderr]   * `bin` target `rustybam`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded unicode-ident v1.0.9
[INFO] [stderr]   Downloaded thiserror-impl v1.0.40
[INFO] [stderr]   Downloaded thiserror v1.0.40
[INFO] [stderr]   Downloaded rustversion v1.0.12
[INFO] [stderr]   Downloaded natord v1.0.9
[INFO] [stderr]   Downloaded safemem v0.3.3
[INFO] [stderr]   Downloaded url v2.4.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.7
[INFO] [stderr]   Downloaded bimap v0.6.3
[INFO] [stderr]   Downloaded regex-syntax v0.7.2
[INFO] [stderr]   Downloaded regex v1.8.4
[INFO] [stderr]   Downloaded anyhow v1.0.71
[INFO] [stderr]   Downloaded csv v1.2.2
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] [stderr]   Downloaded itoa v1.0.6
[INFO] [stderr]   Downloaded ryu v1.0.13
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded gzp v0.11.3
[INFO] [stderr]   Downloaded multimap v0.8.3
[INFO] [stderr]   Downloaded libz-sys v1.1.9
[INFO] [stderr]   Downloaded ordered-float v3.7.0
[INFO] [stderr]   Downloaded petgraph v0.6.3
[INFO] [stderr]   Downloaded serde v1.0.164
[INFO] [stderr]   Downloaded bio v1.3.1
[INFO] [stderr]   Downloaded time v0.1.45
[INFO] [stderr]   Downloaded curl-sys v0.4.63+curl-8.1.2
[INFO] [stderr]   Downloaded chrono v0.4.26
[INFO] [stderr]   Downloaded clap v3.2.25
[INFO] [stderr]   Downloaded pin-project-internal v1.1.2
[INFO] [stderr]   Downloaded pin-project v1.1.2
[INFO] [stderr]   Downloaded libdeflate-sys v0.12.0
[INFO] [stderr]   Downloaded log v0.4.19
[INFO] [stderr]   Downloaded buffer-redux v1.0.0
[INFO] [stderr]   Downloaded hts-sys v2.1.1
[INFO] [stderr]   Downloaded bytecount v0.6.3
[INFO] [stderr]   Downloaded openssl-src v111.26.0+1.1.1u
[INFO] [stderr]   Downloaded flate2 v1.0.26
[INFO] [stderr]   Downloaded xz2 v0.1.7
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded crossbeam-channel v0.5.8
[INFO] [stderr]   Downloaded rayon-core v1.11.0
[INFO] [stderr]   Downloaded rayon v1.7.0
[INFO] [stderr]   Downloaded bio-types v1.0.0
[INFO] [stderr]   Downloaded openssl-sys v0.9.90
[INFO] [stderr]   Downloaded syn v2.0.22
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded safe_arch v0.7.0
[INFO] [stderr]   Downloaded wide v0.7.10
[INFO] [stderr]   Downloaded typenum v1.16.0
[INFO] [stderr]   Downloaded strum_macros v0.25.0
[INFO] [stderr]   Downloaded serde_derive v1.0.164
[INFO] [stderr]   Downloaded calmio_filters v0.1.0
[INFO] [stderr]   Downloaded calm_io v0.1.1
[INFO] [stderr]   Downloaded wasi v0.10.0+wasi-snapshot-preview1
[INFO] [stderr]   Downloaded clap_derive v3.2.25
[INFO] [stderr]   Downloaded os_str_bytes v6.5.1
[INFO] [stderr]   Downloaded textwrap v0.16.0
[INFO] [stderr]   Downloaded clap_complete v3.2.5
[INFO] [stderr]   Downloaded termcolor v1.2.0
[INFO] [stderr]   Downloaded core_affinity v0.8.0
[INFO] [stderr]   Downloaded bumpalo v3.13.0
[INFO] [stderr]   Downloaded nanorand v0.7.0
[INFO] [stderr]   Downloaded libdeflater v0.12.0
[INFO] [stderr]   Downloaded either v1.8.1
[INFO] [stderr]   Downloaded hermit-abi v0.3.1
[INFO] [stderr]   Downloaded proc-macro2 v1.0.63
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded quote v1.0.29
[INFO] [stderr]   Downloaded snap v1.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 867c0cf021886cad361f78c4f8463c30a52981ace629432a8aff8f0d3baa9508
[INFO] running `Command { std: "docker" "start" "-a" "867c0cf021886cad361f78c4f8463c30a52981ace629432a8aff8f0d3baa9508", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "867c0cf021886cad361f78c4f8463c30a52981ace629432a8aff8f0d3baa9508", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "867c0cf021886cad361f78c4f8463c30a52981ace629432a8aff8f0d3baa9508", kill_on_drop: false }`
[INFO] [stdout] 867c0cf021886cad361f78c4f8463c30a52981ace629432a8aff8f0d3baa9508
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c8d01eb11414e83b9da007fdd3dff610dba671ce054352628ed4ab9e9174b7cf
[INFO] running `Command { std: "docker" "start" "-a" "c8d01eb11414e83b9da007fdd3dff610dba671ce054352628ed4ab9e9174b7cf", kill_on_drop: false }`
[INFO] [stderr] warning: file `/opt/rustwide/workdir/src/main.rs` found to be present in multiple build targets:
[INFO] [stderr]   * `bin` target `rb`
[INFO] [stderr]   * `bin` target `rustybam`
[INFO] [stderr]    Compiling libc v0.2.147
[INFO] [stderr]    Compiling proc-macro2 v1.0.63
[INFO] [stderr]    Compiling quote v1.0.29
[INFO] [stderr]    Compiling unicode-ident v1.0.9
[INFO] [stderr]    Compiling pkg-config v0.3.27
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling libm v0.2.7
[INFO] [stderr]    Compiling rustversion v1.0.12
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling serde v1.0.164
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling matrixmultiply v0.3.7
[INFO] [stderr]    Compiling memoffset v0.9.0
[INFO] [stderr]    Compiling thiserror v1.0.40
[INFO] [stderr]     Checking bytemuck v1.13.1
[INFO] [stderr]    Compiling paste v1.0.12
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking aho-corasick v1.0.2
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.15
[INFO] [stderr]    Compiling lock_api v0.4.10
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]     Checking safe_arch v0.7.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling hashbrown v0.12.3
[INFO] [stderr]     Checking regex-syntax v0.7.2
[INFO] [stderr]     Checking tinyvec_macros v0.1.1
[INFO] [stderr]    Compiling os_str_bytes v6.5.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling typenum v1.16.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling termcolor v1.2.0
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking wide v0.7.10
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking tinyvec v1.6.0
[INFO] [stderr]    Compiling clap_lex v0.2.4
[INFO] [stderr]    Compiling jobserver v0.1.26
[INFO] [stderr]    Compiling syn v2.0.22
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]     Checking getrandom v0.2.10
[INFO] [stderr]     Checking num_cpus v1.16.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]    Compiling once_cell v1.18.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking either v1.8.1
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling textwrap v0.16.0
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking miniz_oxide v0.7.1
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling openssl-src v111.26.0+1.1.1u
[INFO] [stderr]     Checking num-complex v0.4.3
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking unicode-normalization v0.1.22
[INFO] [stderr]     Checking unicode-bidi v0.3.13
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]    Compiling rayon-core v1.11.0
[INFO] [stderr]    Compiling log v0.4.19
[INFO] [stderr]    Compiling snap v1.1.0
[INFO] [stderr]     Checking percent-encoding v2.3.0
[INFO] [stderr]    Compiling anyhow v1.0.71
[INFO] [stderr]     Checking crossbeam-deque v0.8.3
[INFO] [stderr]     Checking form_urlencoded v1.2.0
[INFO] [stderr]     Checking spin v0.9.8
[INFO] [stderr]    Compiling libz-sys v1.1.9
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling openssl-sys v0.9.90
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.63+curl-8.1.2
[INFO] [stderr]    Compiling libdeflate-sys v0.12.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]     Checking idna v0.4.0
[INFO] [stderr]    Compiling regex v1.8.4
[INFO] [stderr]     Checking nanorand v0.7.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.8
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking itoa v1.0.6
[INFO] [stderr]     Checking ryu v1.0.13
[INFO] [stderr]     Checking bytecount v0.6.3
[INFO] [stderr]     Checking safemem v0.3.3
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking futures-sink v0.3.28
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking buffer-redux v1.0.0
[INFO] [stderr]     Checking url v2.4.0
[INFO] [stderr]     Checking petgraph v0.6.3
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking ordered-float v3.7.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking core_affinity v0.8.0
[INFO] [stderr]     Checking time v0.1.45
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking iana-time-zone v0.1.57
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking bytes v1.4.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking env_logger v0.9.3
[INFO] [stderr]     Checking chrono v0.4.26
[INFO] [stderr]     Checking rayon v1.7.0
[INFO] [stderr]     Checking colored v2.0.0
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking natord v1.0.9
[INFO] [stderr]     Checking bimap v0.6.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling clap_derive v3.2.25
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]     Checking libdeflater v0.12.0
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling calmio_filters v0.1.0
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking calm_io v0.1.1
[INFO] [stderr]    Compiling serde_derive v1.0.164
[INFO] [stderr]    Compiling thiserror-impl v1.0.40
[INFO] [stderr]    Compiling pin-project-internal v1.1.2
[INFO] [stderr]    Compiling strum_macros v0.25.0
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]    Compiling clap v3.2.25
[INFO] [stderr]     Checking pin-project v1.1.2
[INFO] [stderr]     Checking flume v0.10.14
[INFO] [stderr]     Checking bio-types v1.0.0
[INFO] [stderr]     Checking flate2 v1.0.26
[INFO] [stderr]     Checking gzp v0.11.3
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]    Compiling clap_complete v3.2.5
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]    Compiling rustybam v0.1.33 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking csv v1.2.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.3.1
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 48s
[INFO] running `Command { std: "docker" "inspect" "c8d01eb11414e83b9da007fdd3dff610dba671ce054352628ed4ab9e9174b7cf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c8d01eb11414e83b9da007fdd3dff610dba671ce054352628ed4ab9e9174b7cf", kill_on_drop: false }`
[INFO] [stdout] c8d01eb11414e83b9da007fdd3dff610dba671ce054352628ed4ab9e9174b7cf
[INFO] checking rustybam-0.1.33 against try#519d6e23a6cb73c4d0f295f71ad37db8e95c54ab for pr-125384-2
[INFO] extracting crate rustybam 0.1.33 into /workspace/builds/worker-3-tc2/source
[INFO] validating manifest of crates.io crate rustybam 0.1.33 on toolchain 519d6e23a6cb73c4d0f295f71ad37db8e95c54ab
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-3-tc2/source/.cargo/config
[INFO] started tweaking crates.io crate rustybam 0.1.33
[INFO] finished tweaking crates.io crate rustybam 0.1.33
[INFO] tweaked toml for crates.io crate rustybam 0.1.33 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] crate crates.io crate rustybam 0.1.33 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: file `/workspace/builds/worker-3-tc2/source/src/main.rs` found to be present in multiple build targets:
[INFO] [stderr]   * `bin` target `rb`
[INFO] [stderr]   * `bin` target `rustybam`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e7b78f105bc3b04dbf1824e5479cb43f7584108fb7fb7413ad83fb122ab47856
[INFO] running `Command { std: "docker" "start" "-a" "e7b78f105bc3b04dbf1824e5479cb43f7584108fb7fb7413ad83fb122ab47856", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e7b78f105bc3b04dbf1824e5479cb43f7584108fb7fb7413ad83fb122ab47856", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e7b78f105bc3b04dbf1824e5479cb43f7584108fb7fb7413ad83fb122ab47856", kill_on_drop: false }`
[INFO] [stdout] e7b78f105bc3b04dbf1824e5479cb43f7584108fb7fb7413ad83fb122ab47856
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 606ef1a42799cb8c677530ac3e09c72e5ebd0c541c1f67e63415273d3b8910e6
[INFO] running `Command { std: "docker" "start" "-a" "606ef1a42799cb8c677530ac3e09c72e5ebd0c541c1f67e63415273d3b8910e6", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]    Migrating Cargo.toml from 2021 edition to 2024
[INFO] [stderr]        Fixed Cargo.toml (1 fix)
[INFO] [stderr] warning: file `/tmp/fixit/src/main.rs` found to be present in multiple build targets:
[INFO] [stderr]   * `bin` target `rb`
[INFO] [stderr]   * `bin` target `rustybam`
[INFO] [stderr]    Compiling libc v0.2.147
[INFO] [stderr]    Compiling proc-macro2 v1.0.63
[INFO] [stderr]    Compiling unicode-ident v1.0.9
[INFO] [stderr]    Compiling quote v1.0.29
[INFO] [stderr]    Compiling pkg-config v0.3.27
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling libm v0.2.7
[INFO] [stderr]    Compiling serde v1.0.164
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling rustversion v1.0.12
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling memoffset v0.9.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.7
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking bytemuck v1.13.1
[INFO] [stderr]    Compiling thiserror v1.0.40
[INFO] [stderr]    Compiling paste v1.0.12
[INFO] [stderr]     Checking aho-corasick v1.0.2
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]     Checking safe_arch v0.7.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.15
[INFO] [stderr]    Compiling lock_api v0.4.10
[INFO] [stderr]    Compiling termcolor v1.2.0
[INFO] [stderr]    Compiling os_str_bytes v6.5.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking tinyvec_macros v0.1.1
[INFO] [stderr]    Compiling hashbrown v0.12.3
[INFO] [stderr]     Checking regex-syntax v0.7.2
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling typenum v1.16.0
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]     Checking tinyvec v1.6.0
[INFO] [stderr]    Compiling clap_lex v0.2.4
[INFO] [stderr]    Compiling syn v2.0.22
[INFO] [stderr]     Checking getrandom v0.2.10
[INFO] [stderr]     Checking num_cpus v1.16.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking wide v0.7.10
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling jobserver v0.1.26
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]     Checking either v1.8.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]    Compiling textwrap v0.16.0
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling once_cell v1.18.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking unicode-normalization v0.1.22
[INFO] [stderr]     Checking num-complex v0.4.3
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking miniz_oxide v0.7.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking unicode-bidi v0.3.13
[INFO] [stderr]    Compiling log v0.4.19
[INFO] [stderr]    Compiling snap v1.1.0
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling openssl-src v111.26.0+1.1.1u
[INFO] [stderr]    Compiling rayon-core v1.11.0
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking percent-encoding v2.3.0
[INFO] [stderr]    Compiling anyhow v1.0.71
[INFO] [stderr]     Checking idna v0.4.0
[INFO] [stderr]     Checking regex v1.8.4
[INFO] [stderr]     Checking spin v0.9.8
[INFO] [stderr]     Checking crossbeam-deque v0.8.3
[INFO] [stderr]     Checking nanorand v0.7.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.8
[INFO] [stderr]     Checking form_urlencoded v1.2.0
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking ryu v1.0.13
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking bytecount v0.6.3
[INFO] [stderr]     Checking safemem v0.3.3
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking futures-sink v0.3.28
[INFO] [stderr]     Checking itoa v1.0.6
[INFO] [stderr]     Checking petgraph v0.6.3
[INFO] [stderr]     Checking buffer-redux v1.0.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking ordered-float v3.7.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]    Compiling libz-sys v1.1.9
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling openssl-sys v0.9.90
[INFO] [stderr]    Compiling curl-sys v0.4.63+curl-8.1.2
[INFO] [stderr]    Compiling libdeflate-sys v0.12.0
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]     Checking url v2.4.0
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking core_affinity v0.8.0
[INFO] [stderr]     Checking time v0.1.45
[INFO] [stderr]     Checking bytes v1.4.0
[INFO] [stderr]     Checking iana-time-zone v0.1.57
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]    Compiling env_logger v0.9.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking rayon v1.7.0
[INFO] [stderr]     Checking chrono v0.4.26
[INFO] [stderr]     Checking colored v2.0.0
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking bimap v0.6.3
[INFO] [stderr]     Checking natord v1.0.9
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking libdeflater v0.12.0
[INFO] [stderr]    Compiling clap_derive v3.2.25
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling serde_derive v1.0.164
[INFO] [stderr]    Compiling thiserror-impl v1.0.40
[INFO] [stderr]    Compiling pin-project-internal v1.1.2
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.25.0
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling calmio_filters v0.1.0
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking calm_io v0.1.1
[INFO] [stderr]     Checking pin-project v1.1.2
[INFO] [stderr]     Checking flume v0.10.14
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking bio-types v1.0.0
[INFO] [stderr]    Compiling clap v3.2.25
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]    Compiling clap_complete v3.2.5
[INFO] [stderr]    Compiling rustybam v0.1.33 (/tmp/fixit)
[INFO] [stderr]    Migrating build.rs from 2021 edition to 2024
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking flate2 v1.0.26
[INFO] [stderr]     Checking csv v1.2.2
[INFO] [stderr]     Checking gzp v0.11.3
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.3.1
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]    Migrating src/lib.rs from 2021 edition to 2024
[INFO] [stderr]    Migrating src/main.rs from 2021 edition to 2024
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 41s
[INFO] [stderr] Running `cargo check` to verify 2024
[INFO] [stderr] warning: file `/tmp/fixit/src/main.rs` found to be present in multiple build targets:
[INFO] [stderr]   * `bin` target `rb`
[INFO] [stderr]   * `bin` target `rustybam`
[INFO] [stderr]    Compiling rustybam v0.1.33 (/tmp/fixit)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4.17s
[INFO] running `Command { std: "docker" "inspect" "606ef1a42799cb8c677530ac3e09c72e5ebd0c541c1f67e63415273d3b8910e6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "606ef1a42799cb8c677530ac3e09c72e5ebd0c541c1f67e63415273d3b8910e6", kill_on_drop: false }`
[INFO] [stdout] 606ef1a42799cb8c677530ac3e09c72e5ebd0c541c1f67e63415273d3b8910e6