[INFO] fetching crate gchemol-core 0.1.7... [INFO] checking gchemol-core-0.1.7 against master#91c0823ee63e793d990bb9fed898dc95b5d6db51 for pr-125384-2 [INFO] extracting crate gchemol-core 0.1.7 into /workspace/builds/worker-1-tc1/source [INFO] validating manifest of crates.io crate gchemol-core 0.1.7 on toolchain 91c0823ee63e793d990bb9fed898dc95b5d6db51 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate gchemol-core 0.1.7 [INFO] finished tweaking crates.io crate gchemol-core 0.1.7 [INFO] tweaked toml for crates.io crate gchemol-core 0.1.7 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 123 packages to latest compatible versions [INFO] [stderr] Adding env_logger v0.10.2 (latest: v0.11.3) [INFO] [stderr] Adding fixedbitset v0.4.2 (latest: v0.5.7) [INFO] [stderr] Adding hashbrown v0.12.3 (latest: v0.14.5) [INFO] [stderr] Adding indexmap v1.9.3 (latest: v2.2.6) [INFO] [stderr] Adding itertools v0.10.5 (latest: v0.13.0) [INFO] [stderr] Adding linux-raw-sys v0.4.14 (latest: v0.6.4) [INFO] [stderr] Adding nalgebra v0.31.4 (latest: v0.32.5) [INFO] [stderr] Adding nalgebra-macros v0.1.0 (latest: v0.2.1) [INFO] [stderr] Adding ordered-float v3.9.2 (latest: v4.2.0) [INFO] [stderr] Adding simba v0.7.3 (latest: v0.8.1) [INFO] [stderr] Adding syn v1.0.109 (latest: v2.0.66) [INFO] [stderr] Adding toml v0.7.8 (latest: v0.8.13) [INFO] [stderr] Adding toml_edit v0.19.15 (latest: v0.22.13) [INFO] [stderr] Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.1+wasi-0.2.0) [INFO] [stderr] Adding winnow v0.5.40 (latest: v0.6.9) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded num-rational v0.4.2 [INFO] [stderr] Downloaded vecfx v0.1.6 [INFO] [stderr] Downloaded shell-escape v0.1.5 [INFO] [stderr] Downloaded nalgebra-macros v0.1.0 [INFO] [stderr] Downloaded shared_child v1.0.0 [INFO] [stderr] Downloaded os_pipe v1.1.5 [INFO] [stderr] Downloaded gchemol-lattice v0.1.2 [INFO] [stderr] Downloaded gchemol-graph v0.1.6 [INFO] [stderr] Downloaded bimap v0.6.3 [INFO] [stderr] Downloaded rand_distr v0.4.3 [INFO] [stderr] Downloaded toml v0.7.8 [INFO] [stderr] Downloaded gchemol-neighbors v0.1.3 [INFO] [stderr] Downloaded nalgebra v0.31.4 [INFO] [stderr] Downloaded safe_arch v0.7.1 [INFO] [stderr] Downloaded wide v0.7.21 [INFO] [stderr] Downloaded gchemol-geometry v0.1.1 [INFO] [stderr] Downloaded duct v0.13.7 [INFO] [stderr] Downloaded simba v0.7.3 [INFO] [stderr] Downloaded octree v0.1.0 [INFO] [stderr] Downloaded gchemol-gut v0.4.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 06ac4eb968ee84990e63f115c81d13c3e90b0f8d029795bfd781907628d572c1 [INFO] running `Command { std: "docker" "start" "-a" "06ac4eb968ee84990e63f115c81d13c3e90b0f8d029795bfd781907628d572c1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "06ac4eb968ee84990e63f115c81d13c3e90b0f8d029795bfd781907628d572c1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "06ac4eb968ee84990e63f115c81d13c3e90b0f8d029795bfd781907628d572c1", kill_on_drop: false }` [INFO] [stdout] 06ac4eb968ee84990e63f115c81d13c3e90b0f8d029795bfd781907628d572c1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 77295fa166d526b53d535a2ea166f9bbf5eb49d07ca05457a6288d895ba07795 [INFO] running `Command { std: "docker" "start" "-a" "77295fa166d526b53d535a2ea166f9bbf5eb49d07ca05457a6288d895ba07795", kill_on_drop: false }` [INFO] [stderr] Compiling syn v2.0.66 [INFO] [stderr] Compiling serde v1.0.203 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Checking utf8parse v0.2.1 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Checking anstyle v1.0.7 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking colorchoice v1.0.1 [INFO] [stderr] Checking is_terminal_polyfill v1.70.0 [INFO] [stderr] Checking anstyle-parse v0.2.4 [INFO] [stderr] Checking anstyle-query v1.0.3 [INFO] [stderr] Checking regex-automata v0.4.6 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking powerfmt v0.2.0 [INFO] [stderr] Checking clap_lex v0.7.0 [INFO] [stderr] Checking anstream v0.6.14 [INFO] [stderr] Checking bitflags v2.5.0 [INFO] [stderr] Checking linux-raw-sys v0.4.14 [INFO] [stderr] Checking winnow v0.5.40 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking wide v0.7.21 [INFO] [stderr] Checking deranged v0.3.11 [INFO] [stderr] Checking num-conv v0.1.0 [INFO] [stderr] Checking time-core v0.1.2 [INFO] [stderr] Checking clap_builder v4.5.2 [INFO] [stderr] Checking humantime v2.1.0 [INFO] [stderr] Checking shell-escape v0.1.5 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking indexmap v2.2.6 [INFO] [stderr] Checking time v0.3.36 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking is-terminal v0.4.12 [INFO] [stderr] Checking shared_child v1.0.0 [INFO] [stderr] Checking os_pipe v1.1.5 [INFO] [stderr] Checking duct v0.13.7 [INFO] [stderr] Checking regex v1.10.4 [INFO] [stderr] Checking env_logger v0.10.2 [INFO] [stderr] Checking tempfile v3.10.1 [INFO] [stderr] Compiling serde_derive v1.0.203 [INFO] [stderr] Compiling clap_derive v4.5.4 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Checking clap v4.5.4 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking toml_datetime v0.6.6 [INFO] [stderr] Checking serde_spanned v0.6.6 [INFO] [stderr] Checking serde_json v1.0.117 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking envy v0.4.2 [INFO] [stderr] Checking bimap v0.6.3 [INFO] [stderr] Checking toml_edit v0.19.15 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking simba v0.7.3 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking toml v0.7.8 [INFO] [stderr] Checking gchemol-graph v0.1.6 [INFO] [stderr] Checking gchemol-gut v0.4.4 [INFO] [stderr] Checking nalgebra v0.31.4 [INFO] [stderr] Checking vecfx v0.1.6 [INFO] [stderr] Checking gchemol-lattice v0.1.2 [INFO] [stderr] Checking octree v0.1.0 [INFO] [stderr] Checking gchemol-geometry v0.1.1 [INFO] [stderr] Checking gchemol-neighbors v0.1.3 [INFO] [stderr] Checking gchemol-core v0.1.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 41.32s [INFO] running `Command { std: "docker" "inspect" "77295fa166d526b53d535a2ea166f9bbf5eb49d07ca05457a6288d895ba07795", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "77295fa166d526b53d535a2ea166f9bbf5eb49d07ca05457a6288d895ba07795", kill_on_drop: false }` [INFO] [stdout] 77295fa166d526b53d535a2ea166f9bbf5eb49d07ca05457a6288d895ba07795 [INFO] checking gchemol-core-0.1.7 against try#519d6e23a6cb73c4d0f295f71ad37db8e95c54ab for pr-125384-2 [INFO] extracting crate gchemol-core 0.1.7 into /workspace/builds/worker-1-tc2/source [INFO] validating manifest of crates.io crate gchemol-core 0.1.7 on toolchain 519d6e23a6cb73c4d0f295f71ad37db8e95c54ab [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate gchemol-core 0.1.7 [INFO] finished tweaking crates.io crate gchemol-core 0.1.7 [INFO] tweaked toml for crates.io crate gchemol-core 0.1.7 written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 123 packages to latest compatible versions [INFO] [stderr] Adding env_logger v0.10.2 (latest: v0.11.3) [INFO] [stderr] Adding fixedbitset v0.4.2 (latest: v0.5.7) [INFO] [stderr] Adding hashbrown v0.12.3 (latest: v0.14.5) [INFO] [stderr] Adding indexmap v1.9.3 (latest: v2.2.6) [INFO] [stderr] Adding itertools v0.10.5 (latest: v0.13.0) [INFO] [stderr] Adding linux-raw-sys v0.4.14 (latest: v0.6.4) [INFO] [stderr] Adding nalgebra v0.31.4 (latest: v0.32.5) [INFO] [stderr] Adding nalgebra-macros v0.1.0 (latest: v0.2.1) [INFO] [stderr] Adding ordered-float v3.9.2 (latest: v4.2.0) [INFO] [stderr] Adding simba v0.7.3 (latest: v0.8.1) [INFO] [stderr] Adding syn v1.0.109 (latest: v2.0.66) [INFO] [stderr] Adding toml v0.7.8 (latest: v0.8.13) [INFO] [stderr] Adding toml_edit v0.19.15 (latest: v0.22.13) [INFO] [stderr] Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.1+wasi-0.2.0) [INFO] [stderr] Adding winnow v0.5.40 (latest: v0.6.9) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1c80442d97d8d4b17e6b952f8f8de10fce3bbc8621f5d0907eab3cd5efdbd25b [INFO] running `Command { std: "docker" "start" "-a" "1c80442d97d8d4b17e6b952f8f8de10fce3bbc8621f5d0907eab3cd5efdbd25b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1c80442d97d8d4b17e6b952f8f8de10fce3bbc8621f5d0907eab3cd5efdbd25b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1c80442d97d8d4b17e6b952f8f8de10fce3bbc8621f5d0907eab3cd5efdbd25b", kill_on_drop: false }` [INFO] [stdout] 1c80442d97d8d4b17e6b952f8f8de10fce3bbc8621f5d0907eab3cd5efdbd25b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 996cdf44995a3cdb2b1a79d6d7eba6db65d07ac3cd443a36e65d4a487d377d47 [INFO] running `Command { std: "docker" "start" "-a" "996cdf44995a3cdb2b1a79d6d7eba6db65d07ac3cd443a36e65d4a487d377d47", kill_on_drop: false }` [INFO] [stderr] Copying to /tmp/fixit [INFO] [stderr] Running `cargo fix --edition` [INFO] [stderr] Migrating Cargo.toml from 2021 edition to 2024 [INFO] [stderr] Compiling serde v1.0.203 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Checking utf8parse v0.2.1 [INFO] [stderr] Checking anstyle v1.0.7 [INFO] [stderr] Checking colorchoice v1.0.1 [INFO] [stderr] Compiling syn v2.0.66 [INFO] [stderr] Checking is_terminal_polyfill v1.70.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Checking anstyle-query v1.0.3 [INFO] [stderr] Checking regex-automata v0.4.6 [INFO] [stderr] Checking anstyle-parse v0.2.4 [INFO] [stderr] Checking clap_lex v0.7.0 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking linux-raw-sys v0.4.14 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking bitflags v2.5.0 [INFO] [stderr] Checking powerfmt v0.2.0 [INFO] [stderr] Checking anstream v0.6.14 [INFO] [stderr] Checking winnow v0.5.40 [INFO] [stderr] Checking deranged v0.3.11 [INFO] [stderr] Checking time-core v0.1.2 [INFO] [stderr] Checking wide v0.7.21 [INFO] [stderr] Checking humantime v2.1.0 [INFO] [stderr] Checking num-conv v0.1.0 [INFO] [stderr] Checking shell-escape v0.1.5 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Checking clap_builder v4.5.2 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking indexmap v2.2.6 [INFO] [stderr] Checking time v0.3.36 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Checking is-terminal v0.4.12 [INFO] [stderr] Checking shared_child v1.0.0 [INFO] [stderr] Checking os_pipe v1.1.5 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking duct v0.13.7 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking tempfile v3.10.1 [INFO] [stderr] Checking regex v1.10.4 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Checking env_logger v0.10.2 [INFO] [stderr] Compiling serde_derive v1.0.203 [INFO] [stderr] Compiling clap_derive v4.5.4 [INFO] [stderr] Checking clap v4.5.4 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking serde_spanned v0.6.6 [INFO] [stderr] Checking toml_datetime v0.6.6 [INFO] [stderr] Checking serde_json v1.0.117 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking envy v0.4.2 [INFO] [stderr] Checking bimap v0.6.3 [INFO] [stderr] Checking toml_edit v0.19.15 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking simba v0.7.3 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking toml v0.7.8 [INFO] [stderr] Checking gchemol-gut v0.4.4 [INFO] [stderr] Checking gchemol-graph v0.1.6 [INFO] [stderr] Checking nalgebra v0.31.4 [INFO] [stderr] Checking vecfx v0.1.6 [INFO] [stderr] Checking gchemol-lattice v0.1.2 [INFO] [stderr] Checking octree v0.1.0 [INFO] [stderr] Checking gchemol-geometry v0.1.1 [INFO] [stderr] Checking gchemol-neighbors v0.1.3 [INFO] [stderr] Checking gchemol-core v0.1.7 (/tmp/fixit) [INFO] [stderr] Migrating src/lib.rs from 2021 edition to 2024 [INFO] [stderr] Migrating tests/formula.rs from 2021 edition to 2024 [INFO] [stderr] Migrating tests/basic.rs from 2021 edition to 2024 [INFO] [stderr] Migrating tests/vector3.rs from 2021 edition to 2024 [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 47.36s [INFO] [stderr] Running `cargo check` to verify 2024 [INFO] [stderr] Checking gchemol-core v0.1.7 (/tmp/fixit) [INFO] [stdout] error[E0502]: cannot borrow `*self` as mutable because it is also borrowed as immutable [INFO] [stdout] --> src/molecule.rs:380:24 [INFO] [stdout] | [INFO] [stdout] 379 | for (sn, p) in self.serial_numbers().zip(positions.into_iter()) { [INFO] [stdout] | ------------------------------------------------ [INFO] [stdout] | | [INFO] [stdout] | immutable borrow occurs here [INFO] [stdout] | immutable borrow later used here [INFO] [stdout] 380 | let atom = self.get_atom_mut(sn).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ mutable borrow occurs here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0502]: cannot borrow `*self` as mutable because it is also borrowed as immutable [INFO] [stdout] --> src/molecule.rs:396:24 [INFO] [stdout] | [INFO] [stdout] 395 | for (sn, p) in self.serial_numbers().zip(positions.into_iter()) { [INFO] [stdout] | ------------------------------------------------ [INFO] [stdout] | | [INFO] [stdout] | immutable borrow occurs here [INFO] [stdout] | immutable borrow later used here [INFO] [stdout] 396 | let atom = self.get_atom_mut(sn).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ mutable borrow occurs here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0502]: cannot borrow `*self` as mutable because it is also borrowed as immutable [INFO] [stdout] --> src/molecule.rs:421:24 [INFO] [stdout] | [INFO] [stdout] 420 | for (sn, sy) in self.serial_numbers().zip(symbols.into_iter()) { [INFO] [stdout] | ---------------------------------------------- [INFO] [stdout] | | [INFO] [stdout] | immutable borrow occurs here [INFO] [stdout] | immutable borrow later used here [INFO] [stdout] 421 | let atom = self.get_atom_mut(sn).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ mutable borrow occurs here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 3 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0502`. [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-core` (lib) due to 4 previous errors [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error[E0502]: cannot borrow `*self` as mutable because it is also borrowed as immutable [INFO] [stdout] --> src/molecule.rs:380:24 [INFO] [stdout] | [INFO] [stdout] 379 | for (sn, p) in self.serial_numbers().zip(positions.into_iter()) { [INFO] [stdout] | ------------------------------------------------ [INFO] [stdout] | | [INFO] [stdout] | immutable borrow occurs here [INFO] [stdout] | immutable borrow later used here [INFO] [stdout] 380 | let atom = self.get_atom_mut(sn).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ mutable borrow occurs here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0502]: cannot borrow `*self` as mutable because it is also borrowed as immutable [INFO] [stdout] --> src/molecule.rs:396:24 [INFO] [stdout] | [INFO] [stdout] 395 | for (sn, p) in self.serial_numbers().zip(positions.into_iter()) { [INFO] [stdout] | ------------------------------------------------ [INFO] [stdout] | | [INFO] [stdout] | immutable borrow occurs here [INFO] [stdout] | immutable borrow later used here [INFO] [stdout] 396 | let atom = self.get_atom_mut(sn).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ mutable borrow occurs here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0502]: cannot borrow `*self` as mutable because it is also borrowed as immutable [INFO] [stdout] --> src/molecule.rs:421:24 [INFO] [stdout] | [INFO] [stdout] 420 | for (sn, sy) in self.serial_numbers().zip(symbols.into_iter()) { [INFO] [stdout] | ---------------------------------------------- [INFO] [stdout] | | [INFO] [stdout] | immutable borrow occurs here [INFO] [stdout] | immutable borrow later used here [INFO] [stdout] 421 | let atom = self.get_atom_mut(sn).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ mutable borrow occurs here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 3 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0502`. [INFO] [stdout] [INFO] [stderr] error: could not compile `gchemol-core` (lib test) due to 4 previous errors [INFO] [stderr] error: failed to check after updating to 2024 [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `cargo check --frozen --all --all-targets --message-format=json` (exit status: 101) [INFO] running `Command { std: "docker" "inspect" "996cdf44995a3cdb2b1a79d6d7eba6db65d07ac3cd443a36e65d4a487d377d47", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "996cdf44995a3cdb2b1a79d6d7eba6db65d07ac3cd443a36e65d4a487d377d47", kill_on_drop: false }` [INFO] [stdout] 996cdf44995a3cdb2b1a79d6d7eba6db65d07ac3cd443a36e65d4a487d377d47