[INFO] cloning repository https://github.com/Adoni5/readfish-tools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Adoni5/readfish-tools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Freadfish-tools", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Freadfish-tools'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 65e2b67ce81834e429cc46aea86166036fa2971a
[INFO] checking Adoni5/readfish-tools against master#91c0823ee63e793d990bb9fed898dc95b5d6db51 for pr-125384-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Freadfish-tools" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
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[INFO] validating manifest of git repo https://github.com/Adoni5/readfish-tools on toolchain 91c0823ee63e793d990bb9fed898dc95b5d6db51
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Adoni5/readfish-tools
[INFO] finished tweaking git repo https://github.com/Adoni5/readfish-tools
[INFO] tweaked toml for git repo https://github.com/Adoni5/readfish-tools written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/Adoni5/readfish-tools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded unicode-ident v1.0.10
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6ee4ab6d9e232c5a115a3503814269c40b542a041ba13abb677fde8c82ab9665
[INFO] running `Command { std: "docker" "start" "-a" "6ee4ab6d9e232c5a115a3503814269c40b542a041ba13abb677fde8c82ab9665", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6ee4ab6d9e232c5a115a3503814269c40b542a041ba13abb677fde8c82ab9665", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6ee4ab6d9e232c5a115a3503814269c40b542a041ba13abb677fde8c82ab9665", kill_on_drop: false }`
[INFO] [stdout] 6ee4ab6d9e232c5a115a3503814269c40b542a041ba13abb677fde8c82ab9665
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 27b25b51b95ec75fd8ad31def4c2102c7eb3d3a216fa803bad329ca7fedd4c73
[INFO] running `Command { std: "docker" "start" "-a" "27b25b51b95ec75fd8ad31def4c2102c7eb3d3a216fa803bad329ca7fedd4c73", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.64
[INFO] [stderr]    Compiling quote v1.0.29
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[INFO] [stderr]    Compiling libc v0.2.147
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[INFO] [stderr]    Compiling cc v1.0.79
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[INFO] [stderr]    Compiling serde v1.0.171
[INFO] [stderr]    Compiling once_cell v1.18.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling pkg-config v0.3.27
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling parking_lot_core v0.9.8
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling rustix v0.38.4
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]     Checking linux-raw-sys v0.4.3
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]     Checking bitflags v2.3.3
[INFO] [stderr]     Checking hashbrown v0.14.0
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]    Compiling rayon-core v1.11.0
[INFO] [stderr]     Checking itoa v1.0.8
[INFO] [stderr]     Checking smallvec v1.11.0
[INFO] [stderr]    Compiling thiserror v1.0.43
[INFO] [stderr]     Checking adler v1.0.2
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking miniz_oxide v0.7.1
[INFO] [stderr]     Checking aho-corasick v1.0.2
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[INFO] [stderr]     Checking unindent v0.1.11
[INFO] [stderr]    Compiling lock_api v0.4.10
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[INFO] [stderr]    Compiling crossbeam-epoch v0.9.15
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[INFO] [stderr]    Compiling num-integer v0.1.45
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[INFO] [stderr]    Compiling matrixmultiply v0.3.7
[INFO] [stderr]     Checking dirs-next v2.0.0
[INFO] [stderr]     Checking spin v0.9.8
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[INFO] [stderr]     Checking crossbeam-deque v0.8.3
[INFO] [stderr]     Checking term v0.7.0
[INFO] [stderr]     Checking parking_lot v0.12.1
[INFO] [stderr]     Checking core_affinity v0.8.0
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[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]     Checking arrayvec v0.7.4
[INFO] [stderr]     Checking encode_unicode v1.0.0
[INFO] [stderr]    Compiling indoc v1.0.9
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking num-format v0.4.4
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[INFO] [stderr]     Checking regex-automata v0.3.3
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]    Compiling libdeflate-sys v0.12.0
[INFO] [stderr]    Compiling libz-sys v1.1.12
[INFO] [stderr]     Checking regex v1.9.1
[INFO] [stderr]    Compiling pyo3-ffi v0.19.1
[INFO] [stderr]    Compiling pyo3 v0.19.1
[INFO] [stderr]    Compiling pyo3-macros-backend v0.19.1
[INFO] [stderr]    Compiling serde_derive v1.0.171
[INFO] [stderr]    Compiling pin-project-internal v1.1.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.43
[INFO] [stderr]     Checking libdeflater v0.12.0
[INFO] [stderr]     Checking pin-project v1.1.2
[INFO] [stderr]     Checking flume v0.10.14
[INFO] [stderr]    Compiling pyo3-macros v0.19.1
[INFO] [stderr]     Checking flate2 v1.0.26
[INFO] [stderr]     Checking gzp v0.11.3
[INFO] [stderr]     Checking serde_spanned v0.6.3
[INFO] [stderr]     Checking toml_datetime v0.6.3
[INFO] [stderr]     Checking csv v1.2.2
[INFO] [stderr]     Checking toml_edit v0.19.12
[INFO] [stderr]     Checking prettytable v0.10.0
[INFO] [stderr]     Checking toml v0.7.6
[INFO] [stderr]     Checking readfish-tools v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 56.47s
[INFO] running `Command { std: "docker" "inspect" "27b25b51b95ec75fd8ad31def4c2102c7eb3d3a216fa803bad329ca7fedd4c73", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "27b25b51b95ec75fd8ad31def4c2102c7eb3d3a216fa803bad329ca7fedd4c73", kill_on_drop: false }`
[INFO] [stdout] 27b25b51b95ec75fd8ad31def4c2102c7eb3d3a216fa803bad329ca7fedd4c73
[INFO] checking Adoni5/readfish-tools against try#519d6e23a6cb73c4d0f295f71ad37db8e95c54ab for pr-125384-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Freadfish-tools" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Adoni5/readfish-tools on toolchain 519d6e23a6cb73c4d0f295f71ad37db8e95c54ab
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Adoni5/readfish-tools
[INFO] finished tweaking git repo https://github.com/Adoni5/readfish-tools
[INFO] tweaked toml for git repo https://github.com/Adoni5/readfish-tools written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/Adoni5/readfish-tools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] eecb4cac665f0305e28b999c35d0c4c64ab62b7a14299e54c7fced5810321274
[INFO] running `Command { std: "docker" "start" "-a" "eecb4cac665f0305e28b999c35d0c4c64ab62b7a14299e54c7fced5810321274", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "eecb4cac665f0305e28b999c35d0c4c64ab62b7a14299e54c7fced5810321274", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "eecb4cac665f0305e28b999c35d0c4c64ab62b7a14299e54c7fced5810321274", kill_on_drop: false }`
[INFO] [stdout] eecb4cac665f0305e28b999c35d0c4c64ab62b7a14299e54c7fced5810321274
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+519d6e23a6cb73c4d0f295f71ad37db8e95c54ab" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d2a4b96eabe4dcf14f643289d5c9b63353d29fcce9b428dc3a52800cffce9e7e
[INFO] running `Command { std: "docker" "start" "-a" "d2a4b96eabe4dcf14f643289d5c9b63353d29fcce9b428dc3a52800cffce9e7e", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] Running `cargo fix --edition`
[INFO] [stderr]    Migrating Cargo.toml from 2021 edition to 2024
[INFO] [stderr]        Fixed Cargo.toml (1 fix)
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.64
[INFO] [stderr]    Compiling quote v1.0.29
[INFO] [stderr]    Compiling unicode-ident v1.0.10
[INFO] [stderr]    Compiling libc v0.2.147
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling target-lexicon v0.12.10
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling serde v1.0.171
[INFO] [stderr]    Compiling once_cell v1.18.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.16
[INFO] [stderr]    Compiling pkg-config v0.3.27
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling parking_lot_core v0.9.8
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling rustix v0.38.4
[INFO] [stderr]     Checking smallvec v1.11.0
[INFO] [stderr]     Checking linux-raw-sys v0.4.3
[INFO] [stderr]     Checking bitflags v2.3.3
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]     Checking adler v1.0.2
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]     Checking hashbrown v0.14.0
[INFO] [stderr]    Compiling thiserror v1.0.43
[INFO] [stderr]    Compiling rayon-core v1.11.0
[INFO] [stderr]     Checking itoa v1.0.8
[INFO] [stderr]     Checking miniz_oxide v0.7.1
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[INFO] [stderr]    Migrating src/lib.rs from 2021 edition to 2024
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1028:57
[INFO] [stdout]      |
[INFO] [stdout] 1028 |     fn with_sequencing_summary(&mut self, seq_sum_path: PathBuf) -> PyResult<()> {
[INFO] [stdout]      |                                                         ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout]      = note: `--force-warn unsafe-op-in-unsafe-fn` implied by `--force-warn rust-2024-compatibility`
[INFO] [stdout]      = help: to override `--force-warn rust-2024-compatibility` add `#[allow(unsafe_op_in_unsafe_fn)]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1038:45
[INFO] [stdout]      |
[INFO] [stdout] 1038 |     fn with_toml_conf(&mut self, toml_path: PathBuf) -> PyResult<()> {
[INFO] [stdout]      |                                             ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1077:45
[INFO] [stdout]      |
[INFO] [stdout] 1077 |     fn parse_paf_from_iter(&mut self, iter: &PyIterator) -> PyResult<()> {
[INFO] [stdout]      |                                             ^^^^^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1187:16
[INFO] [stdout]      |
[INFO] [stdout] 1187 |     toml_path: PathBuf,
[INFO] [stdout]      |                ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1188:15
[INFO] [stdout]      |
[INFO] [stdout] 1188 |     paf_path: PathBuf,
[INFO] [stdout]      |               ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1189:19
[INFO] [stdout]      |
[INFO] [stdout] 1189 |     seq_sum_path: PathBuf,
[INFO] [stdout]      |                   ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1220:29
[INFO] [stdout]      |
[INFO] [stdout] 1220 | fn summarise_paf(toml_path: PathBuf, paf_path: PathBuf, seq_sum_path: PathBuf) -> PyResult<()> {
[INFO] [stdout]      |                             ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1220:48
[INFO] [stdout]      |
[INFO] [stdout] 1220 | fn summarise_paf(toml_path: PathBuf, paf_path: PathBuf, seq_sum_path: PathBuf) -> PyResult<()> {
[INFO] [stdout]      |                                                ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1220:71
[INFO] [stdout]      |
[INFO] [stdout] 1220 | fn summarise_paf(toml_path: PathBuf, paf_path: PathBuf, seq_sum_path: PathBuf) -> PyResult<()> {
[INFO] [stdout]      |                                                                       ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 9 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0133`.
[INFO] [stdout] 
[INFO] [stderr]    Migrating tests/integration_tests.rs from 2021 edition to 2024
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1028:57
[INFO] [stdout]      |
[INFO] [stdout] 1028 |     fn with_sequencing_summary(&mut self, seq_sum_path: PathBuf) -> PyResult<()> {
[INFO] [stdout]      |                                                         ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout]      = note: `--force-warn unsafe-op-in-unsafe-fn` implied by `--force-warn rust-2024-compatibility`
[INFO] [stdout]      = help: to override `--force-warn rust-2024-compatibility` add `#[allow(unsafe_op_in_unsafe_fn)]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1038:45
[INFO] [stdout]      |
[INFO] [stdout] 1038 |     fn with_toml_conf(&mut self, toml_path: PathBuf) -> PyResult<()> {
[INFO] [stdout]      |                                             ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1077:45
[INFO] [stdout]      |
[INFO] [stdout] 1077 |     fn parse_paf_from_iter(&mut self, iter: &PyIterator) -> PyResult<()> {
[INFO] [stdout]      |                                             ^^^^^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1187:16
[INFO] [stdout]      |
[INFO] [stdout] 1187 |     toml_path: PathBuf,
[INFO] [stdout]      |                ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1188:15
[INFO] [stdout]      |
[INFO] [stdout] 1188 |     paf_path: PathBuf,
[INFO] [stdout]      |               ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1189:19
[INFO] [stdout]      |
[INFO] [stdout] 1189 |     seq_sum_path: PathBuf,
[INFO] [stdout]      |                   ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1220:29
[INFO] [stdout]      |
[INFO] [stdout] 1220 | fn summarise_paf(toml_path: PathBuf, paf_path: PathBuf, seq_sum_path: PathBuf) -> PyResult<()> {
[INFO] [stdout]      |                             ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1220:48
[INFO] [stdout]      |
[INFO] [stdout] 1220 | fn summarise_paf(toml_path: PathBuf, paf_path: PathBuf, seq_sum_path: PathBuf) -> PyResult<()> {
[INFO] [stdout]      |                                                ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning[E0133]: call to unsafe function `pyo3::impl_::extract_argument::unwrap_required_argument` is unsafe and requires unsafe block
[INFO] [stdout]     --> src/lib.rs:1220:71
[INFO] [stdout]      |
[INFO] [stdout] 1220 | fn summarise_paf(toml_path: PathBuf, paf_path: PathBuf, seq_sum_path: PathBuf) -> PyResult<()> {
[INFO] [stdout]      |                                                                       ^^^^^^^ call to unsafe function
[INFO] [stdout]      |
[INFO] [stdout]      = note: for more information, see issue #71668 <https://github.com/rust-lang/rust/issues/71668>
[INFO] [stdout]      = note: consult the function's documentation for information on how to avoid undefined behavior
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 9 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0133`.
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 43.59s
[INFO] [stderr] Running `cargo check` to verify 2024
[INFO] [stderr]     Checking readfish-tools v0.1.0 (/tmp/fixit)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1.58s
[INFO] running `Command { std: "docker" "inspect" "d2a4b96eabe4dcf14f643289d5c9b63353d29fcce9b428dc3a52800cffce9e7e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d2a4b96eabe4dcf14f643289d5c9b63353d29fcce9b428dc3a52800cffce9e7e", kill_on_drop: false }`
[INFO] [stdout] d2a4b96eabe4dcf14f643289d5c9b63353d29fcce9b428dc3a52800cffce9e7e