[INFO] fetching crate gchemol-readwrite 0.1.11...
[INFO] checking gchemol-readwrite-0.1.11 against master#91c0823ee63e793d990bb9fed898dc95b5d6db51 for pr-125384-2
[INFO] extracting crate gchemol-readwrite 0.1.11 into /workspace/builds/worker-1-tc1/source
[INFO] validating manifest of crates.io crate gchemol-readwrite 0.1.11 on toolchain 91c0823ee63e793d990bb9fed898dc95b5d6db51
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol-readwrite 0.1.11
[INFO] finished tweaking crates.io crate gchemol-readwrite 0.1.11
[INFO] tweaked toml for crates.io crate gchemol-readwrite 0.1.11 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 205 packages to latest compatible versions
[INFO] [stderr]       Adding base64 v0.20.0 (latest: v0.22.1)
[INFO] [stderr]       Adding env_logger v0.10.2 (latest: v0.11.3)
[INFO] [stderr]       Adding fixedbitset v0.4.2 (latest: v0.5.7)
[INFO] [stderr]       Adding gchemol-parser v0.4.6 (latest: v0.5.1)
[INFO] [stderr]       Adding generic-array v0.14.7 (latest: v1.0.0)
[INFO] [stderr]       Adding grep v0.2.13 (latest: v0.3.1)
[INFO] [stderr]       Adding grep-printer v0.1.7 (latest: v0.2.1)
[INFO] [stderr]       Adding handlebars v4.0.1 (latest: v5.1.2)
[INFO] [stderr]       Adding hashbrown v0.12.3 (latest: v0.14.5)
[INFO] [stderr]       Adding indexmap v1.9.3 (latest: v2.2.6)
[INFO] [stderr]       Adding itertools v0.10.5 (latest: v0.13.0)
[INFO] [stderr]       Adding lazy-regex v2.5.0 (latest: v3.1.0)
[INFO] [stderr]       Adding lazy-regex-proc_macros v2.4.1 (latest: v3.1.0)
[INFO] [stderr]       Adding linux-raw-sys v0.4.14 (latest: v0.6.4)
[INFO] [stderr]       Adding minijinja v1.0.21 (latest: v2.0.1)
[INFO] [stderr]       Adding nalgebra v0.31.4 (latest: v0.32.5)
[INFO] [stderr]       Adding nalgebra-macros v0.1.0 (latest: v0.2.1)
[INFO] [stderr]       Adding ordered-float v3.9.2 (latest: v4.2.0)
[INFO] [stderr]       Adding roxmltree v0.18.1 (latest: v0.20.0)
[INFO] [stderr]       Adding simba v0.7.3 (latest: v0.8.1)
[INFO] [stderr]       Adding siphasher v0.3.11 (latest: v1.0.1)
[INFO] [stderr]       Adding syn v1.0.109 (latest: v2.0.66)
[INFO] [stderr]       Adding toml v0.7.8 (latest: v0.8.13)
[INFO] [stderr]       Adding toml_edit v0.19.15 (latest: v0.22.13)
[INFO] [stderr]       Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.1+wasi-0.2.0)
[INFO] [stderr]       Adding windows-core v0.52.0 (latest: v0.56.0)
[INFO] [stderr]       Adding winnow v0.5.40 (latest: v0.6.9)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded matrixmultiply v0.3.8
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded simba v0.7.3
[INFO] [stderr]   Downloaded ordered-float v3.9.2
[INFO] [stderr]   Downloaded vecfx v0.1.6
[INFO] [stderr]   Downloaded safe_arch v0.7.1
[INFO] [stderr]   Downloaded anstyle-query v1.0.3
[INFO] [stderr]   Downloaded grep-searcher v0.1.13
[INFO] [stderr]   Downloaded gchemol-gut v0.4.4
[INFO] [stderr]   Downloaded grep v0.2.13
[INFO] [stderr]   Downloaded grep-printer v0.2.1
[INFO] [stderr]   Downloaded gchemol-neighbors v0.1.3
[INFO] [stderr]   Downloaded ropey v1.6.1
[INFO] [stderr]   Downloaded chrono-tz v0.9.0
[INFO] [stderr]   Downloaded minijinja v1.0.21
[INFO] [stderr]   Downloaded pest v2.7.10
[INFO] [stderr]   Downloaded deunicode v1.6.0
[INFO] [stderr]   Downloaded grep v0.3.1
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[INFO] [stderr]   Downloaded extxyz v0.2.0
[INFO] [stderr]   Downloaded bimap v0.6.3
[INFO] [stderr]   Downloaded envy v0.4.2
[INFO] [stderr]   Downloaded gchemol-geometry v0.1.1
[INFO] [stderr]   Downloaded gchemol-graph v0.1.6
[INFO] [stderr]   Downloaded gchemol-lattice v0.1.2
[INFO] [stderr]   Downloaded gchemol-core v0.1.7
[INFO] [stderr]   Downloaded anstyle-parse v0.2.4
[INFO] [stderr]   Downloaded colorchoice v1.0.1
[INFO] [stderr]   Downloaded is_terminal_polyfill v1.70.0
[INFO] [stderr]   Downloaded anstream v0.6.14
[INFO] [stderr]   Downloaded anstyle v1.0.7
[INFO] [stderr]   Downloaded os_pipe v1.1.5
[INFO] [stderr]   Downloaded shared_child v1.0.0
[INFO] [stderr]   Downloaded duct v0.13.7
[INFO] [stderr]   Downloaded is-terminal v0.4.12
[INFO] [stderr]   Downloaded env_logger v0.10.2
[INFO] [stderr]   Downloaded shell-escape v0.1.5
[INFO] [stderr]   Downloaded toml v0.7.8
[INFO] [stderr]   Downloaded grep-cli v0.1.10
[INFO] [stderr]   Downloaded base64 v0.20.0
[INFO] [stderr]   Downloaded grep-printer v0.1.7
[INFO] [stderr]   Downloaded grep-regex v0.1.12
[INFO] [stderr]   Downloaded gchemol-parser v0.4.6
[INFO] [stderr]   Downloaded encoding_rs_io v0.1.7
[INFO] [stderr]   Downloaded grep-matcher v0.1.7
[INFO] [stderr]   Downloaded memmap2 v0.9.4
[INFO] [stderr]   Downloaded quick-error v2.0.1
[INFO] [stderr]   Downloaded handlebars v4.0.1
[INFO] [stderr]   Downloaded lazy-regex-proc_macros v2.4.1
[INFO] [stderr]   Downloaded roxmltree v0.18.1
[INFO] [stderr]   Downloaded parse-zoneinfo v0.3.1
[INFO] [stderr]   Downloaded phf_codegen v0.11.2
[INFO] [stderr]   Downloaded chrono-tz-build v0.3.0
[INFO] [stderr]   Downloaded humansize v2.1.3
[INFO] [stderr]   Downloaded pest_meta v2.7.10
[INFO] [stderr]   Downloaded pest_generator v2.7.10
[INFO] [stderr]   Downloaded pest_derive v2.7.10
[INFO] [stderr]   Downloaded unic-char-property v0.9.0
[INFO] [stderr]   Downloaded unic-char-range v0.9.0
[INFO] [stderr]   Downloaded unic-common v0.9.0
[INFO] [stderr]   Downloaded unic-ucd-version v0.9.0
[INFO] [stderr]   Downloaded unic-ucd-segment v0.9.0
[INFO] [stderr]   Downloaded unic-segment v0.9.0
[INFO] [stderr]   Downloaded nalgebra v0.31.4
[INFO] [stderr]   Downloaded str_indices v0.4.3
[INFO] [stderr]   Downloaded lazy-regex v2.5.0
[INFO] [stderr]   Downloaded xmlparser v0.13.6
[INFO] [stderr]   Downloaded ucd-trie v0.1.6
[INFO] [stderr]   Downloaded anstyle-wincon v3.0.3
[INFO] [stderr]   Downloaded slug v0.1.5
[INFO] [stderr]   Downloaded tera v1.20.0
[INFO] [stderr]   Downloaded wide v0.7.21
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 635605c920f6d12d18c8b5abd8bbd91177b3b9640caf3e7164a21b09c29cca35
[INFO] running `Command { std: "docker" "start" "-a" "635605c920f6d12d18c8b5abd8bbd91177b3b9640caf3e7164a21b09c29cca35", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "635605c920f6d12d18c8b5abd8bbd91177b3b9640caf3e7164a21b09c29cca35", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "635605c920f6d12d18c8b5abd8bbd91177b3b9640caf3e7164a21b09c29cca35", kill_on_drop: false }`
[INFO] [stdout] 635605c920f6d12d18c8b5abd8bbd91177b3b9640caf3e7164a21b09c29cca35
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=allow" "-e" "RUSTDOCFLAGS=--cap-lints=allow" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+91c0823ee63e793d990bb9fed898dc95b5d6db51" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6793a0170be353b2ede6b522efdb7732a7080f6e3b72ebba5750991c00056f9e
[INFO] running `Command { std: "docker" "start" "-a" "6793a0170be353b2ede6b522efdb7732a7080f6e3b72ebba5750991c00056f9e", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.84
[INFO] [stderr]    Compiling serde v1.0.203
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]     Checking regex-syntax v0.8.3
[INFO] [stderr]     Checking log v0.4.21
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling serde_json v1.0.117
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]     Checking ryu v1.0.18
[INFO] [stderr]     Checking termcolor v1.4.1
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
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[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling syn v2.0.66
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]     Checking utf8parse v0.2.1
[INFO] [stderr]     Checking indexmap v2.2.6
[INFO] [stderr]     Checking bytemuck v1.16.0
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]     Checking anstyle-parse v0.2.4
[INFO] [stderr]     Checking encoding_rs v0.8.34
[INFO] [stderr]     Checking regex-automata v0.4.6
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]     Checking grep-matcher v0.1.7
[INFO] [stderr]    Compiling siphasher v0.3.11
[INFO] [stderr]     Checking colorchoice v1.0.1
[INFO] [stderr]     Checking anstyle v1.0.7
[INFO] [stderr]     Checking either v1.12.0
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]     Checking anstyle-query v1.0.3
[INFO] [stderr]     Checking winnow v0.5.40
[INFO] [stderr]    Compiling ppv-lite86 v0.2.17
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.0
[INFO] [stderr]     Checking anstream v0.6.14
[INFO] [stderr]     Checking encoding_rs_io v0.1.7
[INFO] [stderr]    Compiling phf_shared v0.11.2
[INFO] [stderr]     Checking wide v0.7.21
[INFO] [stderr]     Checking memmap2 v0.9.4
[INFO] [stderr]     Checking num-integer v0.1.46
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[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking clap_lex v0.7.0
[INFO] [stderr]     Checking rawpointer v0.2.1
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[INFO] [stderr]     Checking rustix v0.38.34
[INFO] [stderr]     Checking deranged v0.3.11
[INFO] [stderr]     Checking bstr v1.9.1
[INFO] [stderr]     Checking regex v1.10.4
[INFO] [stderr]     Checking globset v0.4.14
[INFO] [stderr]     Checking grep-searcher v0.1.13
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking rayon-core v1.12.1
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking is-terminal v0.4.12
[INFO] [stderr]     Checking os_pipe v1.1.5
[INFO] [stderr]     Checking shared_child v1.0.0
[INFO] [stderr]     Checking num-conv v0.1.0
[INFO] [stderr]     Checking time-core v0.1.2
[INFO] [stderr]     Checking humantime v2.1.0
[INFO] [stderr]     Checking fastrand v2.1.0
[INFO] [stderr]     Checking time v0.3.36
[INFO] [stderr]    Compiling serde_derive v1.0.203
[INFO] [stderr]    Compiling thiserror-impl v1.0.61
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]     Checking tempfile v3.10.1
[INFO] [stderr]     Checking env_logger v0.10.2
[INFO] [stderr]     Checking duct v0.13.7
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]    Compiling ucd-trie v0.1.6
[INFO] [stderr]     Checking shell-escape v0.1.5
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.1
[INFO] [stderr]     Checking grep-cli v0.1.10
[INFO] [stderr]     Checking grep-regex v0.1.12
[INFO] [stderr]    Compiling phf v0.11.2
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]     Checking unic-common v0.9.0
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]    Compiling thiserror v1.0.61
[INFO] [stderr]     Checking unic-char-range v0.9.0
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]    Compiling pest v2.7.10
[INFO] [stderr]     Checking unic-char-property v0.9.0
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[INFO] [stderr]     Checking str_indices v0.4.3
[INFO] [stderr]     Checking deunicode v1.6.0
[INFO] [stderr]    Compiling pest_meta v2.7.10
[INFO] [stderr]     Checking minimal-lexical v0.2.1
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[INFO] [stderr]     Checking roxmltree v0.18.1
[INFO] [stderr]     Checking lazy-regex v2.5.0
[INFO] [stderr]    Compiling pest_generator v2.7.10
[INFO] [stderr]    Compiling pest_derive v2.7.10
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]     Checking serde_spanned v0.6.6
[INFO] [stderr]     Checking num-complex v0.4.6
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[INFO] [stderr]    Compiling rand_chacha v0.3.1
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[INFO] [stderr]     Checking grep v0.2.13
[INFO] [stderr]     Checking handlebars v4.0.1
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[INFO] [stderr]    Compiling phf_generator v0.11.2
[INFO] [stderr]    Compiling phf_codegen v0.11.2
[INFO] [stderr]     Checking grep-reader v0.1.3
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]    Compiling chrono-tz-build v0.3.0
[INFO] [stderr]     Checking rand_distr v0.4.3
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[INFO] [stderr]    Compiling chrono-tz v0.9.0
[INFO] [stderr]     Checking gchemol-graph v0.1.6
[INFO] [stderr]     Checking gchemol-gut v0.4.4
[INFO] [stderr]     Checking gchemol-parser v0.4.6
[INFO] [stderr]     Checking nalgebra v0.31.4
[INFO] [stderr]     Checking tera v1.20.0
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[INFO] [stderr]     Checking gchemol-lattice v0.1.2
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[INFO] [stderr]     Checking gchemol-neighbors v0.1.3
[INFO] [stderr]     Checking gchemol-core v0.1.7
[INFO] [stderr]     Checking gchemol-readwrite v0.1.11 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 07s
[INFO] running `Command { std: "docker" "inspect" "6793a0170be353b2ede6b522efdb7732a7080f6e3b72ebba5750991c00056f9e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6793a0170be353b2ede6b522efdb7732a7080f6e3b72ebba5750991c00056f9e", kill_on_drop: false }`
[INFO] [stdout] 6793a0170be353b2ede6b522efdb7732a7080f6e3b72ebba5750991c00056f9e