[INFO] fetching crate bamlift 0.3.0...
[INFO] testing bamlift-0.3.0 against master#1871252fc8bb672d40787e67404e6eaae7059369 for pr-125151
[INFO] extracting crate bamlift 0.3.0 into /workspace/builds/worker-0-tc1/source
[INFO] validating manifest of crates.io crate bamlift 0.3.0 on toolchain 1871252fc8bb672d40787e67404e6eaae7059369
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bamlift 0.3.0
[INFO] finished tweaking crates.io crate bamlift 0.3.0
[INFO] tweaked toml for crates.io crate bamlift 0.3.0 written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]      Locking 74 packages to latest compatible versions
[INFO] [stderr]       Adding derive-new v0.5.9 (latest: v0.6.0)
[INFO] [stderr]       Adding env_logger v0.9.3 (latest: v0.11.3)
[INFO] [stderr]       Adding heck v0.4.1 (latest: v0.5.0)
[INFO] [stderr]       Adding hermit-abi v0.1.19 (latest: v0.3.9)
[INFO] [stderr]       Adding itertools v0.10.5 (latest: v0.13.0)
[INFO] [stderr]       Adding quick-error v1.2.3 (latest: v2.0.1)
[INFO] [stderr]       Adding rust-htslib v0.44.1 (latest: v0.47.0)
[INFO] [stderr]       Adding rustc_version v0.1.7 (latest: v0.4.0)
[INFO] [stderr]       Adding semver v0.1.20 (latest: v1.0.23)
[INFO] [stderr]       Adding strum_macros v0.25.3 (latest: v0.26.2)
[INFO] [stderr]       Adding syn v1.0.109 (latest: v2.0.66)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded curl-sys v0.4.72+curl-8.6.0
[INFO] [stderr]   Downloaded hts-sys v2.1.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2e2ec60a8e8379ee6ecb6d243ef0be4283f13f613e507a735fca8ea477412346
[INFO] running `Command { std: "docker" "start" "-a" "2e2ec60a8e8379ee6ecb6d243ef0be4283f13f613e507a735fca8ea477412346", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2e2ec60a8e8379ee6ecb6d243ef0be4283f13f613e507a735fca8ea477412346", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2e2ec60a8e8379ee6ecb6d243ef0be4283f13f613e507a735fca8ea477412346", kill_on_drop: false }`
[INFO] [stdout] 2e2ec60a8e8379ee6ecb6d243ef0be4283f13f613e507a735fca8ea477412346
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 31d2ef6c5e8399ee0704fdff6111b2d2a4247ff45a9dea3821f70bbd25c36dab
[INFO] running `Command { std: "docker" "start" "-a" "31d2ef6c5e8399ee0704fdff6111b2d2a4247ff45a9dea3821f70bbd25c36dab", kill_on_drop: false }`
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling regex-syntax v0.8.3
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling thiserror v1.0.61
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling jobserver v0.1.31
[INFO] [stderr]    Compiling syn v2.0.66
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling log v0.4.21
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling cc v1.0.98
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling termcolor v1.4.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling openssl-src v300.3.0+3.3.0
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling openssl-sys v0.9.102
[INFO] [stderr]    Compiling libz-sys v1.1.18
[INFO] [stderr]    Compiling curl-sys v0.4.72+curl-8.6.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling hts-sys v2.1.4
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling thiserror-impl v1.0.61
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling env_logger v0.9.3
[INFO] [stderr]    Compiling rust-htslib v0.44.1
[INFO] [stderr]    Compiling bamlift v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 00s
[INFO] running `Command { std: "docker" "inspect" "31d2ef6c5e8399ee0704fdff6111b2d2a4247ff45a9dea3821f70bbd25c36dab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "31d2ef6c5e8399ee0704fdff6111b2d2a4247ff45a9dea3821f70bbd25c36dab", kill_on_drop: false }`
[INFO] [stdout] 31d2ef6c5e8399ee0704fdff6111b2d2a4247ff45a9dea3821f70bbd25c36dab
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fea307d608bf1a77df2106b6b5a52695590c7126402d36cd6f50b3d551c8a230
[INFO] running `Command { std: "docker" "start" "-a" "fea307d608bf1a77df2106b6b5a52695590c7126402d36cd6f50b3d551c8a230", kill_on_drop: false }`
[INFO] [stderr]    Compiling bamlift v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.18s
[INFO] running `Command { std: "docker" "inspect" "fea307d608bf1a77df2106b6b5a52695590c7126402d36cd6f50b3d551c8a230", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fea307d608bf1a77df2106b6b5a52695590c7126402d36cd6f50b3d551c8a230", kill_on_drop: false }`
[INFO] [stdout] fea307d608bf1a77df2106b6b5a52695590c7126402d36cd6f50b3d551c8a230
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 56eea0007bd65d3bbc1d244f02ceee88da73cc955e4db06e95e3d3539590a963
[INFO] running `Command { std: "docker" "start" "-a" "56eea0007bd65d3bbc1d244f02ceee88da73cc955e4db06e95e3d3539590a963", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bamlift-beb06164a93cb917)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test-liftover.rs (/opt/rustwide/target/debug/deps/test_liftover-546acff2f1c5a2b4)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test test_lift_reference_positions ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests bamlift
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test src/lib.rs - merge_two_lists_with_qual (line 22) ... ok
[INFO] [stdout] test src/lib.rs - search_sorted (line 109) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.03s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "56eea0007bd65d3bbc1d244f02ceee88da73cc955e4db06e95e3d3539590a963", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "56eea0007bd65d3bbc1d244f02ceee88da73cc955e4db06e95e3d3539590a963", kill_on_drop: false }`
[INFO] [stdout] 56eea0007bd65d3bbc1d244f02ceee88da73cc955e4db06e95e3d3539590a963
