[INFO] fetching crate atglib 0.2.2...
[INFO] testing atglib-0.2.2 against master#1871252fc8bb672d40787e67404e6eaae7059369 for pr-125151
[INFO] extracting crate atglib 0.2.2 into /workspace/builds/worker-4-tc1/source
[INFO] validating manifest of crates.io crate atglib 0.2.2 on toolchain 1871252fc8bb672d40787e67404e6eaae7059369
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate atglib 0.2.2
[INFO] finished tweaking crates.io crate atglib 0.2.2
[INFO] tweaked toml for crates.io crate atglib 0.2.2 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 76 packages to latest compatible versions
[INFO] [stderr]       Adding anes v0.1.6 (latest: v0.2.0)
[INFO] [stderr]       Adding bitflags v1.3.2 (latest: v2.5.0)
[INFO] [stderr]       Adding clap v3.2.25 (latest: v4.5.4)
[INFO] [stderr]       Adding clap_lex v0.2.4 (latest: v0.7.0)
[INFO] [stderr]       Adding criterion v0.4.0 (latest: v0.5.1)
[INFO] [stderr]       Adding hashbrown v0.12.3 (latest: v0.14.5)
[INFO] [stderr]       Adding hermit-abi v0.1.19 (latest: v0.3.9)
[INFO] [stderr]       Adding indexmap v1.9.3 (latest: v2.2.6)
[INFO] [stderr]       Adding itertools v0.10.5 (latest: v0.13.0)
[INFO] [stderr]       Adding os_str_bytes v6.6.1 (latest: v7.0.0)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e268dca6be8bf76f7cd254553d2ecb4f2b2763fa80e5ca1ef536868ea2866547
[INFO] running `Command { std: "docker" "start" "-a" "e268dca6be8bf76f7cd254553d2ecb4f2b2763fa80e5ca1ef536868ea2866547", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e268dca6be8bf76f7cd254553d2ecb4f2b2763fa80e5ca1ef536868ea2866547", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e268dca6be8bf76f7cd254553d2ecb4f2b2763fa80e5ca1ef536868ea2866547", kill_on_drop: false }`
[INFO] [stdout] e268dca6be8bf76f7cd254553d2ecb4f2b2763fa80e5ca1ef536868ea2866547
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] da7be950b118de00296867250f072939b82a325ec0bd7625c98e96e51db49b8b
[INFO] running `Command { std: "docker" "start" "-a" "da7be950b118de00296867250f072939b82a325ec0bd7625c98e96e51db49b8b", kill_on_drop: false }`
[INFO] [stderr]    Compiling atglib v0.2.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unexpected `cfg` condition value: `with-bench`
[INFO] [stdout]    --> src/gtf/record.rs:661:17
[INFO] [stdout]     |
[INFO] [stdout] 661 | #[cfg(all(test, feature = "with-bench"))]
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stdout]     |
[INFO] [stdout]     = note: no expected values for `feature`
[INFO] [stdout]     = help: consider adding `with-bench` as a feature in `Cargo.toml`
[INFO] [stdout]     = note: see <https://doc.rust-lang.org/nightly/cargo/reference/build-scripts.html#rustc-check-cfg> for more information about checking conditional configuration
[INFO] [stdout]     = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.90s
[INFO] running `Command { std: "docker" "inspect" "da7be950b118de00296867250f072939b82a325ec0bd7625c98e96e51db49b8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "da7be950b118de00296867250f072939b82a325ec0bd7625c98e96e51db49b8b", kill_on_drop: false }`
[INFO] [stdout] da7be950b118de00296867250f072939b82a325ec0bd7625c98e96e51db49b8b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5a3079edceabcf230d0cc64ce28210a09510736953a2caba7ca85d09f02e409c
[INFO] running `Command { std: "docker" "start" "-a" "5a3079edceabcf230d0cc64ce28210a09510736953a2caba7ca85d09f02e409c", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.202
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling either v1.12.0
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling ciborium-io v0.2.2
[INFO] [stderr]    Compiling regex-syntax v0.8.3
[INFO] [stderr]    Compiling hashbrown v0.12.3
[INFO] [stderr]    Compiling os_str_bytes v6.6.1
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling half v2.4.1
[INFO] [stderr]    Compiling textwrap v0.16.1
[INFO] [stderr]    Compiling cast v0.3.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling oorandom v11.1.3
[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling clap_lex v0.2.4
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling clap v3.2.25
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling plotters v0.3.6
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling serde_json v1.0.117
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling atglib v0.2.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unexpected `cfg` condition value: `with-bench`
[INFO] [stdout]    --> src/gtf/record.rs:661:17
[INFO] [stdout]     |
[INFO] [stdout] 661 | #[cfg(all(test, feature = "with-bench"))]
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stdout]     |
[INFO] [stdout]     = note: no expected values for `feature`
[INFO] [stdout]     = help: consider adding `with-bench` as a feature in `Cargo.toml`
[INFO] [stdout]     = note: see <https://doc.rust-lang.org/nightly/cargo/reference/build-scripts.html#rustc-check-cfg> for more information about checking conditional configuration
[INFO] [stdout]     = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion v0.4.0
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `with-bench`
[INFO] [stdout]    --> src/gtf/record.rs:661:17
[INFO] [stdout]     |
[INFO] [stdout] 661 | #[cfg(all(test, feature = "with-bench"))]
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stdout]     |
[INFO] [stdout]     = note: no expected values for `feature`
[INFO] [stdout]     = help: consider adding `with-bench` as a feature in `Cargo.toml`
[INFO] [stdout]     = note: see <https://doc.rust-lang.org/nightly/cargo/reference/build-scripts.html#rustc-check-cfg> for more information about checking conditional configuration
[INFO] [stdout]     = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 9.02s
[INFO] running `Command { std: "docker" "inspect" "5a3079edceabcf230d0cc64ce28210a09510736953a2caba7ca85d09f02e409c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5a3079edceabcf230d0cc64ce28210a09510736953a2caba7ca85d09f02e409c", kill_on_drop: false }`
[INFO] [stdout] 5a3079edceabcf230d0cc64ce28210a09510736953a2caba7ca85d09f02e409c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] efd414d155e673340f684028f9ae180ad9284a13822960a08049709383572ee3
[INFO] running `Command { std: "docker" "start" "-a" "efd414d155e673340f684028f9ae180ad9284a13822960a08049709383572ee3", kill_on_drop: false }`
[INFO] [stderr] warning: unexpected `cfg` condition value: `with-bench`
[INFO] [stderr]    --> src/gtf/record.rs:661:17
[INFO] [stderr]     |
[INFO] [stderr] 661 | #[cfg(all(test, feature = "with-bench"))]
[INFO] [stderr]     |                 ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition
[INFO] [stderr]     |
[INFO] [stderr]     = note: no expected values for `feature`
[INFO] [stderr]     = help: consider adding `with-bench` as a feature in `Cargo.toml`
[INFO] [stderr]     = note: see <https://doc.rust-lang.org/nightly/cargo/reference/build-scripts.html#rustc-check-cfg> for more information about checking conditional configuration
[INFO] [stderr]     = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `atglib` (lib) generated 1 warning
[INFO] [stderr] warning: `atglib` (lib test) generated 1 warning (1 duplicate)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.04s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/atglib-a6765dc5f9bfa126)
[INFO] [stdout] 
[INFO] [stdout] running 125 tests
[INFO] [stdout] test fasta::reader::tests::test_fai_errors ... ok
[INFO] [stdout] test fasta::reader::tests::test_fasta_reading ... ok
[INFO] [stdout] test genepred::writer::tests::test_nm_001365057 ... ok
[INFO] [stdout] test fasta::writer::tests::test_sequence_building ... ok
[INFO] [stdout] test fasta::writer::tests::test_creating_writer ... ok
[INFO] [stdout] test fasta::reader::tests::test_fai_reading ... ok
[INFO] [stdout] test genepred::writer::tests::test_nm_001365408 ... ok
[INFO] [stdout] test genepred::writer::tests::test_nm_001371720 ... ok
[INFO] [stdout] test genepred::writer::tests::test_nm_201550 ... ok
[INFO] [stdout] test genepredext::reader::tests::test_nm_001365057 ... ok
[INFO] [stdout] test genepredext::reader::tests::test_nm_001365408 ... ok
[INFO] [stdout] test genepredext::reader::tests::test_nm_201550 ... ok
[INFO] [stdout] test genepredext::reader::tests::test_nm_001371720 ... ok
[INFO] [stdout] test genepredext::writer::tests::test_nm_001365057 ... ok
[INFO] [stdout] test genepredext::writer::tests::test_nm_001365408 ... ok
[INFO] [stdout] test genepredext::writer::tests::test_nm_001371720 ... ok
[INFO] [stdout] test genepredext::writer::tests::test_nm_201550 ... ok
[INFO] [stdout] test gtf::reader::test_nm_201550::test_read ... ok
[INFO] [stdout] test gtf::reader::test_ighm::test_read ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_001365057 ... ok
[INFO] [stdout] test gtf::reader::test_nm_001385228::test_read ... ok
[INFO] [stdout] test gtf::record::tests::test_single_attribute_parsing ... ok
[INFO] [stdout] test gtf::record::tests::test_attributes_parsing ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_001371720 ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_001365408 ... ok
[INFO] [stdout] test models::genetic_code::tests::test_mito_stop_codon ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_201550 ... ok
[INFO] [stdout] test models::genetic_code::tests::test_transcript ... ok
[INFO] [stdout] test models::genetic_code::tests::test_reverse_lookup ... ok
[INFO] [stdout] test models::genetic_code::tests::test_stop_codon ... ok
[INFO] [stdout] test models::sequence::tests::test_chunks ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_001371720 ... ok
[INFO] [stdout] test models::sequence::tests::test_contains ... ok
[INFO] [stdout] test gtf::reader::tests::test_nm_201550 ... ok
[INFO] [stdout] test models::sequence::tests::test_create_sequence ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_001365057 ... ok
[INFO] [stdout] test models::test_start_codon::case_1 ... ok
[INFO] [stdout] test gtf::writer::tests::test_nm_001365408 ... ok
[INFO] [stdout] test models::test_start_codon::case_2 ... ok
[INFO] [stdout] test models::genetic_code::tests::test_start_codon ... ok
[INFO] [stdout] test models::test_start_codon_negative_strand::case_1 ... ok
[INFO] [stdout] test models::test_start_codon::case_3 ... ok
[INFO] [stdout] test models::test_start_codon_negative_strand::case_2 ... ok
[INFO] [stdout] test models::test_start_codon_negative_strand::case_3 ... ok
[INFO] [stdout] test models::test_stop_codon::case_5 ... ok
[INFO] [stdout] test models::test_stop_codon::case_6 ... ok
[INFO] [stdout] test models::tests::test_frame_addition ... ok
[INFO] [stdout] test models::tests::test_special_transcripts ... ok
[INFO] [stdout] test models::test_codon::test_codon_builder ... ok
[INFO] [stdout] test models::test_start_codon::case_5 ... ok
[INFO] [stdout] test models::test_start_codon::case_6 ... ok
[INFO] [stdout] test models::test_start_codon_negative_strand::case_4 ... ok
[INFO] [stdout] test models::test_stop_codon::case_1 ... ok
[INFO] [stdout] test models::test_start_codon::case_4 ... ok
[INFO] [stdout] test models::transcript::tests::test_exon_coordinates ... ok
[INFO] [stdout] test models::transcript::tests::test_utr3_coordinates ... ok
[INFO] [stdout] test models::test_stop_codon::case_3 ... ok
[INFO] [stdout] test models::transcript::tests::test_utr5_coordinates ... ok
[INFO] [stdout] test qc::test::test_correct_cds_length ... ok
[INFO] [stdout] test qc::test::test_check_inframe_stop ... ok
[INFO] [stdout] test models::tests::test_exon_downstream_frame ... ok
[INFO] [stdout] test models::test_stop_codon::case_2 ... ok
[INFO] [stdout] test models::tests::test_transcript ... ok
[INFO] [stdout] test qc::test::test_correct_forward_single_start_codon ... ok
[INFO] [stdout] test models::transcript::tests::test_cds_coordinates ... ok
[INFO] [stdout] test qc::test::test_correct_forward_split_start_codon ... ok
[INFO] [stdout] test qc::test::test_correct_forward_split_stop_codon ... ok
[INFO] [stdout] test models::transcript::tests::test_utr_coordinates ... ok
[INFO] [stdout] test qc::test::test_correct_reverse_single_start_codon ... ok
[INFO] [stdout] test qc::test::test_correct_reverse_split_start_codon ... ok
[INFO] [stdout] test qc::test::test_correct_reverse_single_stop_codon ... ok
[INFO] [stdout] test models::test_stop_codon::case_4 ... ok
[INFO] [stdout] test qc::test::test_correct_forward_single_stop_codon ... ok
[INFO] [stdout] test qc::test::test_extra_start_codon ... ok
[INFO] [stdout] test qc::test::test_non_coding_cds_length ... ok
[INFO] [stdout] test qc::test::test_incorrect_forward_split_start_codon ... ok
[INFO] [stdout] test qc::test::test_qc_check ... ok
[INFO] [stdout] test qc::test::test_incorrect_cds_length ... ok
[INFO] [stdout] test qc::writer::tests::test_adding_genetic_codes ... ok
[INFO] [stdout] test refgene::reader::tests::test_missing_exon_frame ... ok
[INFO] [stdout] test refgene::reader::tests::test_missing_exon_start ... ok
[INFO] [stdout] test qc::test::test_incorrect_forward_single_start_codon ... ok
[INFO] [stdout] test qc::test::test_starts_with_start_codon ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_001365408 ... ok
[INFO] [stdout] test refgene::reader::tests::test_missing_exon_stop ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_001365057 ... ok
[INFO] [stdout] test refgene::reader::tests::test_wrong_exon_frame ... ok
[INFO] [stdout] test qc::writer::tests::test_chromosome_with_alternative_stop_codons ... ok
[INFO] [stdout] test refgene::tests::test_parse_exons_with_cds ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_001371720 ... ok
[INFO] [stdout] test refgene::reader::tests::test_nm_201550 ... ok
[INFO] [stdout] test refgene::reader::tests::test_parse_exons_no_cds ... ok
[INFO] [stdout] test refgene::tests::test_transcript_building ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_001371720 ... ok
[INFO] [stdout] test refgene::tests::test_parsing_and_composing ... ok
[INFO] [stdout] test spliceai::writer::test_spliceailine::test_multiple_transcripts ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_201550 ... ok
[INFO] [stdout] test spliceai::writer::test_spliceailine::test_single_transcript ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_001365057 ... ok
[INFO] [stdout] test spliceai::writer::test_spliceailine::write_multiple_transcripts ... ok
[INFO] [stdout] test spliceai::writer::test_spliceailine::write_transcripts ... ok
[INFO] [stdout] test refgene::writer::tests::test_nm_001365408 ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_left_overlap ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_no_overlap ... ok
[INFO] [stdout] test tests::transcripts::tests::test_mito_transcript ... ok
[INFO] [stdout] test utils::genomic_relations::test_merge::test_merge ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_right_overlap ... ok
[INFO] [stdout] test utils::genomic_relations::test_overlap::test_cds_overlap ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_downstream ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_inside ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_left ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_b_fully_in_a ... ok
[INFO] [stdout] test utils::genomic_relations::test_intersect::test_a_fully_in_b ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_right ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_match ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_1 ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_upstream ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_2 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_3 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_4 ... ok
[INFO] [stdout] test utils::genomic_relations::test_relation::test_overlaps ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_7 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_5 ... ok
[INFO] [stdout] test utils::genomic_relations::test_subtraction::test_case_6 ... ok
[INFO] [stdout] test models::sequence::tests::test_contains_fails - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 125 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests atglib
[INFO] [stdout] 
[INFO] [stdout] running 88 tests
[INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer<W,R>::fasta_reader (line 127) ... ok
[INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader (line 136) ... ok
[INFO] [stdout] test src/genepredext/reader.rs - genepredext::reader::Reader (line 16) ... ok
[INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader<R>::read_sequence (line 271) ... ok
[INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader<File>::new (line 176) ... ok
[INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader<R>::from_reader (line 220) ... ok
[INFO] [stdout] test src/genepred/writer.rs - genepred::writer::Writer (line 12) ... ok
[INFO] [stdout] test src/genepredext/reader.rs - genepredext::reader::Reader<File>::from_file (line 44) ... ok
[INFO] [stdout] test src/bed/writer.rs - bed::writer::Writer (line 14) ... ok
[INFO] [stdout] test src/fasta/reader.rs - fasta::reader::FastaReader<File>::from_file (line 156) ... ok
[INFO] [stdout] test src/genepredext/reader.rs - genepredext::reader::Reader<R>::transcripts (line 125) ... ok
[INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer (line 54) ... ok
[INFO] [stdout] test src/genepredext/writer.rs - genepredext::writer::Writer (line 12) ... ok
[INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer (line 31) ... ok
[INFO] [stdout] test src/gtf/reader.rs - gtf::reader::Reader (line 20) ... ok
[INFO] [stdout] test src/fasta/writer.rs - fasta::writer::Writer<W,R>::header_template (line 173) ... ok
[INFO] [stdout] test src/gtf/record.rs - gtf::record::GtfRecordBuilder (line 333) ... ok
[INFO] [stdout] test src/models/exon.rs - models::exon::Exon::is_coding (line 124) ... ok
[INFO] [stdout] test src/lib.rs - (line 43) ... ok
[INFO] [stdout] test src/models/exon.rs - models::exon::Exon (line 10) ... ok
[INFO] [stdout] test src/models/codon.rs - models::codon::Codon::from_transcript (line 41) ... ok
[INFO] [stdout] test src/models/aminoacid.rs - models::aminoacid::AminoAcid::single_letter (line 58) ... ok
[INFO] [stdout] test src/models/frame.rs - models::frame::Frame::from_gtf (line 67) ... ok
[INFO] [stdout] test src/models/aminoacid.rs - models::aminoacid::AminoAcid (line 12) ... ok
[INFO] [stdout] test src/models/exon.rs - models::exon::Exon::new (line 38) ... ok
[INFO] [stdout] test src/models/frame.rs - models::frame::Frame (line 17) ... ok
[INFO] [stdout] test src/gtf/reader.rs - gtf::reader::Reader<File>::from_file (line 49) ... ok
[INFO] [stdout] test src/models/frame.rs - models::frame::Frame::from_refgene (line 86) ... ok
[INFO] [stdout] test src/gtf/writer.rs - gtf::writer::Writer (line 17) ... ok
[INFO] [stdout] test src/gtf/reader.rs - gtf::reader::Reader<R>::transcripts (line 127) ... ok
[INFO] [stdout] test src/lib.rs - (line 22) ... ok
[INFO] [stdout] test src/models/frame.rs - models::frame::Frame::to_gtf (line 110) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode (line 22) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::reverse_lookup (line 237) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::guess (line 167) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::new (line 78) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::stop_codons (line 268) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::is_start_codon (line 305) ... ok
[INFO] [stdout] test src/models/frame.rs - models::frame::Frame::to_refgene (line 129) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::is_stop_codon (line 283) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::translate (line 221) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::complement (line 45) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::to_bytes (line 66) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::append (line 480) ... ok
[INFO] [stdout] test src/models/genetic_code.rs - models::genetic_code::GeneticCode::vertebrate_mitochondrial (line 115) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::to_str (line 83) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Nucleotide::as_ncbi_int (line 106) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::chunks (line 593) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::from_coordinates (line 376) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::contains (line 646) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::from_raw_bytes (line 350) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::complement (line 501) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::len (line 412) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::push_char (line 431) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::clear (line 466) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::reverse_complement (line 535) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::equals (line 661) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::new (line 299) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::to_bytes (line 552) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::push (line 447) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::reverse (line 519) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::write_into_string (line 568) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::with_capacity (line 322) ... ok
[INFO] [stdout] test src/models/sequence.rs - models::sequence::Sequence::position (line 611) ... ok
[INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts (line 13) ... ok
[INFO] [stdout] test src/models/transcript.rs - models::transcript::TranscriptBuilder<'a>::new (line 479) ... ok
[INFO] [stdout] test src/models/transcript.rs - models::transcript::TranscriptBuilder (line 443) ... ok
[INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts::by_name (line 66) ... ok
[INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts::by_gene (line 97) ... ok
[INFO] [stdout] test src/models/transcripts.rs - models::transcripts::Transcripts::push (line 128) ... ok
[INFO] [stdout] test src/models/utils.rs - models::utils::Strand (line 58) ... ok
[INFO] [stdout] test src/qc/mod.rs - qc (line 43) ... ok
[INFO] [stdout] test src/qc/mod.rs - qc (line 22) ... ok
[INFO] [stdout] test src/qc/writer.rs - qc::writer::Writer<W,R>::add_genetic_code (line 108) ... ok
[INFO] [stdout] test src/qc/writer.rs - qc::writer::Writer<W,R>::fasta_reader (line 79) ... ok
[INFO] [stdout] test src/refgene/reader.rs - refgene::reader::Reader<R>::transcripts (line 125) ... ok
[INFO] [stdout] test src/qc/mod.rs - qc::QcCheck (line 132) ... ok
[INFO] [stdout] test src/refgene/reader.rs - refgene::reader::Reader (line 20) ... ok
[INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::exon_cds_overlap (line 213) ... ok
[INFO] [stdout] test src/qc/mod.rs - qc::QcCheck::new (line 193) ... ok
[INFO] [stdout] test src/refgene/reader.rs - refgene::reader::Reader<File>::from_file (line 48) ... ok
[INFO] [stdout] test src/qc/writer.rs - qc::writer::Writer (line 16) ... ok
[INFO] [stdout] test src/refgene/writer.rs - refgene::writer::Writer (line 14) ... ok
[INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::union (line 66) ... ok
[INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::subtract (line 133) ... ok
[INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::intersect (line 42) ... ok
[INFO] [stdout] test src/spliceai/writer.rs - spliceai::writer::Writer (line 17) ... ok
[INFO] [stdout] test src/utils/genomic_relations.rs - utils::genomic_relations::relation (line 184) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 88 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 3.03s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "efd414d155e673340f684028f9ae180ad9284a13822960a08049709383572ee3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "efd414d155e673340f684028f9ae180ad9284a13822960a08049709383572ee3", kill_on_drop: false }`
[INFO] [stdout] efd414d155e673340f684028f9ae180ad9284a13822960a08049709383572ee3
