[INFO] fetching crate sigalign-core 0.1.0...
[INFO] testing sigalign-core-0.1.0 against master#1871252fc8bb672d40787e67404e6eaae7059369 for pr-125151
[INFO] extracting crate sigalign-core 0.1.0 into /workspace/builds/worker-7-tc1/source
[INFO] validating manifest of crates.io crate sigalign-core 0.1.0 on toolchain 1871252fc8bb672d40787e67404e6eaae7059369
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate sigalign-core 0.1.0
[INFO] finished tweaking crates.io crate sigalign-core 0.1.0
[INFO] tweaked toml for crates.io crate sigalign-core 0.1.0 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 33 packages to latest compatible versions
[INFO] [stderr]       Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.1+wasi-0.2.0)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded capwriter v0.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] cf2a272c28d86753aac213335b95df9b682068344e54827efaf5a52ccb218dee
[INFO] running `Command { std: "docker" "start" "-a" "cf2a272c28d86753aac213335b95df9b682068344e54827efaf5a52ccb218dee", kill_on_drop: false }`
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[INFO] [stdout] cf2a272c28d86753aac213335b95df9b682068344e54827efaf5a52ccb218dee
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1fb6e671382a700784993cb90184826f2a2dc567b0dc9700decb78d5ec8125ce
[INFO] running `Command { std: "docker" "start" "-a" "1fb6e671382a700784993cb90184826f2a2dc567b0dc9700decb78d5ec8125ce", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling syn v2.0.66
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling zerocopy v0.7.34
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-bigint v0.4.5
[INFO] [stderr]    Compiling num-iter v0.1.45
[INFO] [stderr]    Compiling serde_derive v1.0.202
[INFO] [stderr]    Compiling bytemuck_derive v1.6.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.61
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling thiserror v1.0.61
[INFO] [stderr]    Compiling num v0.4.3
[INFO] [stderr]    Compiling bytemuck v1.16.0
[INFO] [stderr]    Compiling capwriter v0.2.0
[INFO] [stderr]    Compiling serde v1.0.202
[INFO] [stderr]    Compiling serde_json v1.0.117
[INFO] [stderr]    Compiling sigalign-core v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: field `max_penalty` is never read
[INFO] [stdout]   --> src/algorithm/wave_front/mod.rs:14:9
[INFO] [stdout]    |
[INFO] [stdout] 13 | pub struct WaveFront {
[INFO] [stdout]    |            --------- field in this struct
[INFO] [stdout] 14 |     pub max_penalty: usize,
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `WaveFront` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `SemiGlobalExtension` is never constructed
[INFO] [stdout]   --> src/algorithm/semi_global/extend/mod.rs:21:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | pub struct SemiGlobalExtension {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `SemiGlobalExtension` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `reset` is never used
[INFO] [stdout]   --> src/aligner/space_manager/single_regulator/mod.rs:23:8
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub trait SingleSpaceManager {
[INFO] [stdout]    |           ------------------ method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 23 |     fn reset(&mut self);
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `reset` is never used
[INFO] [stdout]   --> src/aligner/space_manager/multiple_regulators/mod.rs:25:8
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub trait MultipleSpaceManager {
[INFO] [stdout]    |           -------------------- method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 25 |     fn reset(&mut self);
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 4 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 16.62s
[INFO] running `Command { std: "docker" "inspect" "1fb6e671382a700784993cb90184826f2a2dc567b0dc9700decb78d5ec8125ce", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1fb6e671382a700784993cb90184826f2a2dc567b0dc9700decb78d5ec8125ce", kill_on_drop: false }`
[INFO] [stdout] 1fb6e671382a700784993cb90184826f2a2dc567b0dc9700decb78d5ec8125ce
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 196e5351dcc79c9e1f7c1c7b994f0ffd73495058430568f30166c4f519ad177a
[INFO] running `Command { std: "docker" "start" "-a" "196e5351dcc79c9e1f7c1c7b994f0ffd73495058430568f30166c4f519ad177a", kill_on_drop: false }`
[INFO] [stderr]    Compiling sigalign-core v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: field `max_penalty` is never read
[INFO] [stdout]   --> src/algorithm/wave_front/mod.rs:14:9
[INFO] [stdout]    |
[INFO] [stdout] 13 | pub struct WaveFront {
[INFO] [stdout]    |            --------- field in this struct
[INFO] [stdout] 14 |     pub max_penalty: usize,
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `WaveFront` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `SemiGlobalExtension` is never constructed
[INFO] [stdout]   --> src/algorithm/semi_global/extend/mod.rs:21:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | pub struct SemiGlobalExtension {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `SemiGlobalExtension` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `reset` is never used
[INFO] [stdout]   --> src/aligner/space_manager/single_regulator/mod.rs:23:8
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub trait SingleSpaceManager {
[INFO] [stdout]    |           ------------------ method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 23 |     fn reset(&mut self);
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `reset` is never used
[INFO] [stdout]   --> src/aligner/space_manager/multiple_regulators/mod.rs:25:8
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub trait MultipleSpaceManager {
[INFO] [stdout]    |           -------------------- method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 25 |     fn reset(&mut self);
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 4 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `max_penalty` is never read
[INFO] [stdout]   --> src/algorithm/wave_front/mod.rs:14:9
[INFO] [stdout]    |
[INFO] [stdout] 13 | pub struct WaveFront {
[INFO] [stdout]    |            --------- field in this struct
[INFO] [stdout] 14 |     pub max_penalty: usize,
[INFO] [stdout]    |         ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `WaveFront` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `SemiGlobalExtension` is never constructed
[INFO] [stdout]   --> src/algorithm/semi_global/extend/mod.rs:21:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | pub struct SemiGlobalExtension {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `SemiGlobalExtension` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `reset` is never used
[INFO] [stdout]   --> src/aligner/space_manager/single_regulator/mod.rs:23:8
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub trait SingleSpaceManager {
[INFO] [stdout]    |           ------------------ method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 23 |     fn reset(&mut self);
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `reset` is never used
[INFO] [stdout]   --> src/aligner/space_manager/multiple_regulators/mod.rs:25:8
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub trait MultipleSpaceManager {
[INFO] [stdout]    |           -------------------- method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 25 |     fn reset(&mut self);
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 4 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.09s
[INFO] running `Command { std: "docker" "inspect" "196e5351dcc79c9e1f7c1c7b994f0ffd73495058430568f30166c4f519ad177a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "196e5351dcc79c9e1f7c1c7b994f0ffd73495058430568f30166c4f519ad177a", kill_on_drop: false }`
[INFO] [stdout] 196e5351dcc79c9e1f7c1c7b994f0ffd73495058430568f30166c4f519ad177a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 2210ddb41babfff7d5a8714e986e7322bae2b4c9940a5bf7b6cb63fac58dbc5a
[INFO] running `Command { std: "docker" "start" "-a" "2210ddb41babfff7d5a8714e986e7322bae2b4c9940a5bf7b6cb63fac58dbc5a", kill_on_drop: false }`
[INFO] [stderr] warning: field `max_penalty` is never read
[INFO] [stderr]   --> src/algorithm/wave_front/mod.rs:14:9
[INFO] [stderr]    |
[INFO] [stderr] 13 | pub struct WaveFront {
[INFO] [stderr]    |            --------- field in this struct
[INFO] [stderr] 14 |     pub max_penalty: usize,
[INFO] [stderr]    |         ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `WaveFront` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: struct `SemiGlobalExtension` is never constructed
[INFO] [stderr]   --> src/algorithm/semi_global/extend/mod.rs:21:12
[INFO] [stderr]    |
[INFO] [stderr] 21 | pub struct SemiGlobalExtension {
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `SemiGlobalExtension` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: method `reset` is never used
[INFO] [stderr]   --> src/aligner/space_manager/single_regulator/mod.rs:23:8
[INFO] [stderr]    |
[INFO] [stderr] 16 | pub trait SingleSpaceManager {
[INFO] [stderr]    |           ------------------ method in this trait
[INFO] [stderr] ...
[INFO] [stderr] 23 |     fn reset(&mut self);
[INFO] [stderr]    |        ^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `reset` is never used
[INFO] [stderr]   --> src/aligner/space_manager/multiple_regulators/mod.rs:25:8
[INFO] [stderr]    |
[INFO] [stderr] 16 | pub trait MultipleSpaceManager {
[INFO] [stderr]    |           -------------------- method in this trait
[INFO] [stderr] ...
[INFO] [stderr] 25 |     fn reset(&mut self);
[INFO] [stderr]    |        ^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `sigalign-core` (lib) generated 4 warnings
[INFO] [stderr] warning: `sigalign-core` (lib test) generated 4 warnings (4 duplicates)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.05s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/sigalign_core-2a62eefaf0d811cc)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test aligner::regulator::tests::test_gcd_calculation_for_penalties ... ok
[INFO] [stdout] test algorithm::wave_front::fill::tests::test_if_the_default_value_of_component_is_filled_with_zero ... ok
[INFO] [stderr]    Doc-tests sigalign_core
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test src/reference/mod.rs - reference (line 90) ... FAILED
[INFO] [stdout] test src/reference/mod.rs - reference (line 29) ... FAILED
[INFO] [stdout] test src/reference/mod.rs - reference (line 61) ... FAILED
[INFO] [stdout] test src/reference/mod.rs - reference (line 98) ... FAILED
[INFO] [stdout] test src/reference/mod.rs - reference (line 75) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/reference/mod.rs - reference (line 90) stdout ----
[INFO] [stdout] error[E0425]: cannot find value `reference` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:91:21
[INFO] [stdout]   |
[INFO] [stdout] 3 | let mut reference = reference;
[INFO] [stdout]   |                     ^^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/reference/mod.rs - reference (line 29) stdout ----
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `sigalign`
[INFO] [stdout]  --> src/reference/mod.rs:30:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use sigalign::reference::{
[INFO] [stdout]   |     ^^^^^^^^ use of undeclared crate or module `sigalign`
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0433`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/reference/mod.rs - reference (line 61) stdout ----
[INFO] [stdout] error[E0425]: cannot find value `aligner` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:62:14
[INFO] [stdout]   |
[INFO] [stdout] 3 | let result = aligner.align_query(
[INFO] [stdout]   |              ^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `reference` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:63:6
[INFO] [stdout]   |
[INFO] [stdout] 4 |     &reference,
[INFO] [stdout]   |      ^^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `aligner` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:67:14
[INFO] [stdout]   |
[INFO] [stdout] 8 | let result = aligner.align_fasta_file(
[INFO] [stdout]   |              ^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `reference` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:68:6
[INFO] [stdout]   |
[INFO] [stdout] 9 |     &reference,
[INFO] [stdout]   |      ^^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 4 previous errors
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/reference/mod.rs - reference (line 98) stdout ----
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `sigalign`
[INFO] [stdout]  --> src/reference/mod.rs:99:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use sigalign::reference::extensions::Serialize;
[INFO] [stdout]   |     ^^^^^^^^ use of undeclared crate or module `sigalign`
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `reference` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:101:1
[INFO] [stdout]   |
[INFO] [stdout] 5 | reference.save_to(&mut buffer).unwrap();
[INFO] [stdout]   | ^^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `buffer` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:101:24
[INFO] [stdout]   |
[INFO] [stdout] 5 | reference.save_to(&mut buffer).unwrap();
[INFO] [stdout]   |                        ^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Reference`
[INFO] [stdout]  --> src/reference/mod.rs:103:17
[INFO] [stdout]   |
[INFO] [stdout] 7 | let reference = Reference::<Lfi32B2V64, InMemoryStorage>::load_from(&buffer[..]).unwrap();
[INFO] [stdout]   |                 ^^^^^^^^^ use of undeclared type `Reference`
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]   |
[INFO] [stdout] 2 + use sigalign_core::reference::Reference;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `Lfi32B2V64` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:103:29
[INFO] [stdout]   |
[INFO] [stdout] 7 | let reference = Reference::<Lfi32B2V64, InMemoryStorage>::load_from(&buffer[..]).unwrap();
[INFO] [stdout]   |                             ^^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: you might be missing a type parameter
[INFO] [stdout]   |
[INFO] [stdout] 2 | fn main() { #[allow(non_snake_case)] fn _doctest_main_src_reference_mod_rs_98_0<Lfi32B2V64>() {
[INFO] [stdout]   |                                                                                ++++++++++++
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `InMemoryStorage` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:103:41
[INFO] [stdout]   |
[INFO] [stdout] 7 | let reference = Reference::<Lfi32B2V64, InMemoryStorage>::load_from(&buffer[..]).unwrap();
[INFO] [stdout]   |                                         ^^^^^^^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: you might be missing a type parameter
[INFO] [stdout]   |
[INFO] [stdout] 2 | fn main() { #[allow(non_snake_case)] fn _doctest_main_src_reference_mod_rs_98_0<InMemoryStorage>() {
[INFO] [stdout]   |                                                                                +++++++++++++++++
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `buffer` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:103:70
[INFO] [stdout]   |
[INFO] [stdout] 7 | let reference = Reference::<Lfi32B2V64, InMemoryStorage>::load_from(&buffer[..]).unwrap();
[INFO] [stdout]   |                                                                      ^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 7 previous errors
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0412, E0425, E0433.
[INFO] [stdout] For more information about an error, try `rustc --explain E0412`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/reference/mod.rs - reference (line 75) stdout ----
[INFO] [stdout] error[E0425]: cannot find value `reference` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:76:27
[INFO] [stdout]   |
[INFO] [stdout] 3 | let mut sequence_buffer = reference.get_sequence_buffer();
[INFO] [stdout]   |                           ^^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `aligner` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:78:5
[INFO] [stdout]   |
[INFO] [stdout] 5 |     aligner.alignment(
[INFO] [stdout]   |     ^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find value `reference` in this scope
[INFO] [stdout]  --> src/reference/mod.rs:79:10
[INFO] [stdout]   |
[INFO] [stdout] 6 |         &reference,
[INFO] [stdout]   |          ^^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 3 previous errors
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/reference/mod.rs - reference (line 29)
[INFO] [stdout]     src/reference/mod.rs - reference (line 61)
[INFO] [stdout]     src/reference/mod.rs - reference (line 75)
[INFO] [stdout]     src/reference/mod.rs - reference (line 90)
[INFO] [stdout]     src/reference/mod.rs - reference (line 98)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 5 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.19s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "2210ddb41babfff7d5a8714e986e7322bae2b4c9940a5bf7b6cb63fac58dbc5a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2210ddb41babfff7d5a8714e986e7322bae2b4c9940a5bf7b6cb63fac58dbc5a", kill_on_drop: false }`
[INFO] [stdout] 2210ddb41babfff7d5a8714e986e7322bae2b4c9940a5bf7b6cb63fac58dbc5a
