[INFO] cloning repository https://github.com/chfi/rust-qtlreaper
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chfi/rust-qtlreaper" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper", kill_on_drop: false }`
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[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8d650921ec4aec63c42068de58b91579228f57b1
[INFO] testing chfi/rust-qtlreaper against master#1871252fc8bb672d40787e67404e6eaae7059369 for pr-125151
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frust-qtlreaper" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/chfi/rust-qtlreaper on toolchain 1871252fc8bb672d40787e67404e6eaae7059369
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/chfi/rust-qtlreaper
[INFO] finished tweaking git repo https://github.com/chfi/rust-qtlreaper
[INFO] tweaked toml for git repo https://github.com/chfi/rust-qtlreaper written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/chfi/rust-qtlreaper already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]      Locking 1 package to latest compatible version
[INFO] [stderr]     Updating qtlreaper v0.1.3 (/workspace/builds/worker-4-tc1/source) -> v0.1.4
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[INFO] [stdout] 5f7f07c7922d5befb9907862620f579b30b0b532a5024cc16653dd1fd51f51d3
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[INFO] [stderr]    Compiling autocfg v0.1.6
[INFO] [stderr]    Compiling libc v0.2.54
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling rand_core v0.4.0
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling syn v0.15.34
[INFO] [stderr]    Compiling arrayvec v0.4.10
[INFO] [stderr]    Compiling cfg-if v0.1.9
[INFO] [stderr]    Compiling nodrop v0.1.13
[INFO] [stderr]    Compiling lazy_static v1.3.0
[INFO] [stderr]    Compiling memoffset v0.2.1
[INFO] [stderr]    Compiling scopeguard v0.3.3
[INFO] [stderr]    Compiling rayon-core v1.4.1
[INFO] [stderr]    Compiling either v1.5.2
[INFO] [stderr]    Compiling unicode-width v0.1.5
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]    Compiling serde v1.0.91
[INFO] [stderr]    Compiling unicode-segmentation v1.3.0
[INFO] [stderr]    Compiling crossbeam-utils v0.2.2
[INFO] [stderr]    Compiling ryu v0.2.8
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling rawpointer v0.1.0
[INFO] [stderr]    Compiling rayon v1.0.3
[INFO] [stderr]    Compiling bitflags v1.0.4
[INFO] [stderr]    Compiling rand_core v0.3.1
[INFO] [stderr]    Compiling ndarray v0.12.1
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[INFO] [stderr]    Compiling num-traits v0.2.8
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling rand_chacha v0.1.1
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[INFO] [stderr]    Compiling rand_hc v0.1.0
[INFO] [stderr]    Compiling rand_isaac v0.1.1
[INFO] [stderr]    Compiling rand_jitter v0.1.4
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling itoa v0.4.4
[INFO] [stderr]    Compiling crossbeam-epoch v0.3.1
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling num_cpus v1.10.0
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling quote v0.6.12
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling crossbeam-deque v0.2.0
[INFO] [stderr]    Compiling serde_derive v1.0.91
[INFO] [stderr]    Compiling structopt-derive v0.2.15
[INFO] [stderr]    Compiling structopt v0.2.15
[INFO] [stderr]    Compiling serde_json v1.0.39
[INFO] [stderr]    Compiling qtlreaper v0.1.4 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/lib.rs:5:22
[INFO] [stdout]   |
[INFO] [stdout] 5 | #[macro_use(s, azip, array)]
[INFO] [stdout]   |                      ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `PERMUTATION_TESTSIZE` is never used
[INFO] [stdout]  --> src/regression.rs:5:7
[INFO] [stdout]   |
[INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000;
[INFO] [stdout]   |       ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `regression_2n_variance` is never used
[INFO] [stdout]    --> src/regression.rs:250:4
[INFO] [stdout]     |
[INFO] [stdout] 250 | fn regression_2n_variance(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]    --> src/geneobject.rs:126:35
[INFO] [stdout]     |
[INFO] [stdout] 126 | #[derive(Debug, PartialEq, Clone, Serialize)]
[INFO] [stdout]     |                                   ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_Marker`
[INFO] [stdout]     = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]     = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]     = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]     = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]     = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]     = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]    --> src/geneobject.rs:664:17
[INFO] [stdout]     |
[INFO] [stdout] 664 | #[derive(Debug, Serialize)]
[INFO] [stdout]     |                 ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_QTL`
[INFO] [stdout]     = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]     = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]     = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]     = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]     = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `n_bootstrap` is never read
[INFO] [stdout]   --> src/main.rs:67:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | struct Opt {
[INFO] [stdout]    |        --- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 67 |     n_bootstrap: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 8.68s
[INFO] running `Command { std: "docker" "inspect" "5f7f07c7922d5befb9907862620f579b30b0b532a5024cc16653dd1fd51f51d3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5f7f07c7922d5befb9907862620f579b30b0b532a5024cc16653dd1fd51f51d3", kill_on_drop: false }`
[INFO] [stdout] 5f7f07c7922d5befb9907862620f579b30b0b532a5024cc16653dd1fd51f51d3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 02fd26773a15d399f390e1c81011c728836654c03bfcda1c45fe7ea3965f78e5
[INFO] running `Command { std: "docker" "start" "-a" "02fd26773a15d399f390e1c81011c728836654c03bfcda1c45fe7ea3965f78e5", kill_on_drop: false }`
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/lib.rs:5:22
[INFO] [stdout]   |
[INFO] [stdout] 5 | #[macro_use(s, azip, array)]
[INFO] [stdout]   |                      ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `PERMUTATION_TESTSIZE` is never used
[INFO] [stdout]  --> src/regression.rs:5:7
[INFO] [stdout]   |
[INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000;
[INFO] [stdout]   |       ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `regression_2n_variance` is never used
[INFO] [stdout]    --> src/regression.rs:250:4
[INFO] [stdout]     |
[INFO] [stdout] 250 | fn regression_2n_variance(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]    --> src/geneobject.rs:126:35
[INFO] [stdout]     |
[INFO] [stdout] 126 | #[derive(Debug, PartialEq, Clone, Serialize)]
[INFO] [stdout]     |                                   ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_Marker`
[INFO] [stdout]     = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]     = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]     = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]     = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]     = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]     = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling qtlreaper v0.1.4 (/opt/rustwide/workdir)
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]    --> src/geneobject.rs:664:17
[INFO] [stdout]     |
[INFO] [stdout] 664 | #[derive(Debug, Serialize)]
[INFO] [stdout]     |                 ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_QTL`
[INFO] [stdout]     = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]     = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]     = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]     = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]     = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `n_bootstrap` is never read
[INFO] [stdout]   --> src/main.rs:67:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | struct Opt {
[INFO] [stdout]    |        --- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 67 |     n_bootstrap: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `PERMUTATION_TESTSIZE` is never used
[INFO] [stdout]  --> src/regression.rs:5:7
[INFO] [stdout]   |
[INFO] [stdout] 5 | const PERMUTATION_TESTSIZE: usize = 1000;
[INFO] [stdout]   |       ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `regression_2n_variance` is never used
[INFO] [stdout]    --> src/regression.rs:250:4
[INFO] [stdout]     |
[INFO] [stdout] 250 | fn regression_2n_variance(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]    --> src/geneobject.rs:126:35
[INFO] [stdout]     |
[INFO] [stdout] 126 | #[derive(Debug, PartialEq, Clone, Serialize)]
[INFO] [stdout]     |                                   ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_Marker`
[INFO] [stdout]     = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]     = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]     = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]     = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]     = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]     = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]    --> src/geneobject.rs:664:17
[INFO] [stdout]     |
[INFO] [stdout] 664 | #[derive(Debug, Serialize)]
[INFO] [stdout]     |                 ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_QTL`
[INFO] [stdout]     = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]     = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]     = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]     = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]     = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 4 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.79s
[INFO] running `Command { std: "docker" "inspect" "02fd26773a15d399f390e1c81011c728836654c03bfcda1c45fe7ea3965f78e5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "02fd26773a15d399f390e1c81011c728836654c03bfcda1c45fe7ea3965f78e5", kill_on_drop: false }`
[INFO] [stdout] 02fd26773a15d399f390e1c81011c728836654c03bfcda1c45fe7ea3965f78e5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 8256f9d637f4a4fb2dab15a017032d2b7304f99d24b80562f5ab03fb5e715c25
[INFO] running `Command { std: "docker" "start" "-a" "8256f9d637f4a4fb2dab15a017032d2b7304f99d24b80562f5ab03fb5e715c25", kill_on_drop: false }`
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> src/lib.rs:5:22
[INFO] [stderr]   |
[INFO] [stderr] 5 | #[macro_use(s, azip, array)]
[INFO] [stderr]   |                      ^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: constant `PERMUTATION_TESTSIZE` is never used
[INFO] [stderr]  --> src/regression.rs:5:7
[INFO] [stderr]   |
[INFO] [stderr] 5 | const PERMUTATION_TESTSIZE: usize = 1000;
[INFO] [stderr]   |       ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function `regression_2n_variance` is never used
[INFO] [stderr]    --> src/regression.rs:250:4
[INFO] [stderr]     |
[INFO] [stderr] 250 | fn regression_2n_variance(
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stderr]    --> src/geneobject.rs:126:35
[INFO] [stderr]     |
[INFO] [stderr] 126 | #[derive(Debug, PartialEq, Clone, Serialize)]
[INFO] [stderr]     |                                   ^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_Marker`
[INFO] [stderr]     = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stderr]     = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stderr]     = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stderr]     = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stderr]     = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stderr]     = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stderr]    --> src/geneobject.rs:664:17
[INFO] [stderr]     |
[INFO] [stderr] 664 | #[derive(Debug, Serialize)]
[INFO] [stderr]     |                 ^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_QTL`
[INFO] [stderr]     = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stderr]     = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stderr]     = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stderr]     = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stderr]     = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: `qtlreaper` (lib) generated 5 warnings
[INFO] [stderr] warning: `qtlreaper` (lib test) generated 4 warnings (4 duplicates)
[INFO] [stderr] warning: field `n_bootstrap` is never read
[INFO] [stderr]   --> src/main.rs:67:5
[INFO] [stderr]    |
[INFO] [stderr] 15 | struct Opt {
[INFO] [stderr]    |        --- field in this struct
[INFO] [stderr] ...
[INFO] [stderr] 67 |     n_bootstrap: usize,
[INFO] [stderr]    |     ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `Opt` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `qtlreaper` (bin "qtlreaper" test) generated 1 warning
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.10s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/qtlreaper-95ddd83584d0287f)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test geneobject::tests::it_can_parse_metadata ... ok
[INFO] [stdout] test geneobject::tests::it_can_parse_header ... ok
[INFO] [stdout] test geneobject::tests::it_can_estimate_unknown_genotypes ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- geneobject::tests::it_can_estimate_unknown_genotypes stdout ----
[INFO] [stdout] thread 'geneobject::tests::it_can_estimate_unknown_genotypes' panicked at src/geneobject.rs:895:9:
[INFO] [stdout] assertion `left == right` failed
[INFO] [stdout]   left: [Locus { dominance: None, genotype: [Mat, Mat, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-1.0, -1.0, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Pat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-0.18523506128077272, 1.0, 0.9616255554798838] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.18906668494617707, 0.3421367343627406, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.5826065314914579, -0.32233300305265566, 0.3223330030526552] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -0.34213673436274084] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Mat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]
[INFO] [stdout]  right: [Locus { dominance: None, genotype: [Mat, Mat, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-1.0, -1.0, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk1", centi_morgan: 10.0, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Pat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [-0.18523506128077272, 1.0, 0.9616255554798838] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk2", centi_morgan: 30.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Pat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.18906668494617707, 0.3421367343627405, 1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk3", centi_morgan: 40.1, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Unk, Unk, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [0.5826065314914579, -0.3223330030526561, 0.3223330030526552] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk4", centi_morgan: 50.2, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Unk] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -0.34213673436274084] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk5", centi_morgan: 60.3, mega_basepair: None, chromosome: "1" } }, Locus { dominance: None, genotype: [Pat, Mat, Mat] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, genoprob: [1.0, -1.0, -1.0] shape=[3], strides=[1], layout=C | F (0x3), const ndim=1, marker: Marker { name: "Mk6", centi_morgan: 70.1, mega_basepair: None, chromosome: "1" } }]
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x5563a11ad215 - std::backtrace_rs::backtrace::libunwind::trace::h59d96bdb08384354
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/../../backtrace/src/backtrace/libunwind.rs:105:5
[INFO] [stdout]    1:     0x5563a11ad215 - std::backtrace_rs::backtrace::trace_unsynchronized::h9cf5becacfc93fba
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stdout]    2:     0x5563a11ad215 - std::sys_common::backtrace::_print_fmt::h10b76d10405dbd48
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:68:5
[INFO] [stdout]    3:     0x5563a11ad215 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h6ed9e62a156d84e4
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:44:22
[INFO] [stdout]    4:     0x5563a11d3e8b - core::fmt::rt::Argument::fmt::h645c680983f03c9f
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/fmt/rt.rs:165:63
[INFO] [stdout]    5:     0x5563a11d3e8b - core::fmt::write::h8bcd80919a02be29
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/fmt/mod.rs:1169:21
[INFO] [stdout]    6:     0x5563a11aaa4f - std::io::Write::write_fmt::h8d0c47c662cad79c
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/io/mod.rs:1835:15
[INFO] [stdout]    7:     0x5563a11acfee - std::sys_common::backtrace::_print::h6306f131a28d62b0
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:47:5
[INFO] [stdout]    8:     0x5563a11acfee - std::sys_common::backtrace::print::h7079288e0a26dfcc
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:34:9
[INFO] [stdout]    9:     0x5563a11aea19 - std::panicking::default_hook::{{closure}}::hb063ecec81a736ba
[INFO] [stdout]   10:     0x5563a11ae6de - std::panicking::default_hook::hd56ee406bf547b5c
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:295:9
[INFO] [stdout]   11:     0x5563a1172a6a - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::he5eacdef44c8728f
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/alloc/src/boxed.rs:2036:9
[INFO] [stdout]   12:     0x5563a1172a6a - test::test_main::{{closure}}::h0ec9aed229e79095
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:137:21
[INFO] [stdout]   13:     0x5563a11af01b - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hcbd0d80e1ad4e4f9
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/alloc/src/boxed.rs:2036:9
[INFO] [stdout]   14:     0x5563a11af01b - std::panicking::rust_panic_with_hook::h624aa3ca42ebb8f2
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:799:13
[INFO] [stdout]   15:     0x5563a11aed94 - std::panicking::begin_panic_handler::{{closure}}::hbc4e76194a5e287c
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:664:13
[INFO] [stdout]   16:     0x5563a11ad6d9 - std::sys_common::backtrace::__rust_end_short_backtrace::h847fedc9d1ff7b6d
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:171:18
[INFO] [stdout]   17:     0x5563a11aeac7 - rust_begin_unwind
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:652:5
[INFO] [stdout]   18:     0x5563a111b843 - core::panicking::panic_fmt::hec11a924b87ce965
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/panicking.rs:72:14
[INFO] [stdout]   19:     0x5563a111bc6e - core::panicking::assert_failed_inner::h01c8f7f0c1caba58
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/panicking.rs:408:17
[INFO] [stdout]   20:     0x5563a112bcce - core::panicking::assert_failed::h72a6a3088011461a
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/panicking.rs:363:5
[INFO] [stdout]   21:     0x5563a1122c3f - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::he5030e4f980281be
[INFO] [stdout]                                at /opt/rustwide/workdir/src/geneobject.rs:895:9
[INFO] [stdout]   22:     0x5563a11201b7 - qtlreaper::geneobject::tests::it_can_estimate_unknown_genotypes::{{closure}}::h85ef302a4a2f4be2
[INFO] [stdout]                                at /opt/rustwide/workdir/src/geneobject.rs:808:43
[INFO] [stdout]   23:     0x5563a112ab96 - core::ops::function::FnOnce::call_once::hea203fb1330b5100
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x5563a117744b - core::ops::function::FnOnce::call_once::h2e43a8f6f3d94b99
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x5563a117744b - test::__rust_begin_short_backtrace::h214c9f2d2d3fee90
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:625:18
[INFO] [stdout]   26:     0x5563a1176b51 - test::run_test_in_process::{{closure}}::h510b7ba7990692a5
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:648:60
[INFO] [stdout]   27:     0x5563a1176b51 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h4157186197a93871
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   28:     0x5563a1176b51 - std::panicking::try::do_call::h1bf2463bccd4b28c
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:559:40
[INFO] [stdout]   29:     0x5563a1176b51 - std::panicking::try::hd6d4808c9fab4fa5
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:523:19
[INFO] [stdout]   30:     0x5563a1176b51 - std::panic::catch_unwind::hd5641d97d123f9f2
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panic.rs:149:14
[INFO] [stdout]   31:     0x5563a1176b51 - test::run_test_in_process::hc273b71c8b878a4c
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:648:27
[INFO] [stdout]   32:     0x5563a1176b51 - test::run_test::{{closure}}::h6838df834eb8467e
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:569:43
[INFO] [stdout]   33:     0x5563a113f514 - test::run_test::{{closure}}::h608b98ecff5665fb
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:599:41
[INFO] [stdout]   34:     0x5563a113f514 - std::sys_common::backtrace::__rust_begin_short_backtrace::hdc4182b97d1042e9
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:155:18
[INFO] [stdout]   35:     0x5563a1143f42 - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h571773fd21d674c8
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/thread/mod.rs:542:17
[INFO] [stdout]   36:     0x5563a1143f42 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hdcd384cf2fa70ba3
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   37:     0x5563a1143f42 - std::panicking::try::do_call::h4f1a44bd81423be1
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:559:40
[INFO] [stdout]   38:     0x5563a1143f42 - std::panicking::try::h5e02afcb81dcd361
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:523:19
[INFO] [stdout]   39:     0x5563a1143f42 - std::panic::catch_unwind::h022f75775bfd8c45
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panic.rs:149:14
[INFO] [stdout]   40:     0x5563a1143f42 - std::thread::Builder::spawn_unchecked_::{{closure}}::hf5a62e9e4e6df1f8
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/thread/mod.rs:541:30
[INFO] [stdout]   41:     0x5563a1143f42 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h6d56360aeb9509a7
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   42:     0x5563a11b31fb - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h7a343dc551c06baa
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/alloc/src/boxed.rs:2022:9
[INFO] [stdout]   43:     0x5563a11b31fb - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h30b8111cbaa644f3
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/alloc/src/boxed.rs:2022:9
[INFO] [stdout]   44:     0x5563a11b31fb - std::sys::pal::unix::thread::Thread::new::thread_start::h7404e134e61e7a11
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys/pal/unix/thread.rs:108:17
[INFO] [stdout]   45:     0x7f7996864ac3 - <unknown>
[INFO] [stdout]   46:     0x7f79968f5a04 - __clone
[INFO] [stdout]   47:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     geneobject::tests::it_can_estimate_unknown_genotypes
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 2 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] running `Command { std: "docker" "inspect" "8256f9d637f4a4fb2dab15a017032d2b7304f99d24b80562f5ab03fb5e715c25", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8256f9d637f4a4fb2dab15a017032d2b7304f99d24b80562f5ab03fb5e715c25", kill_on_drop: false }`
[INFO] [stdout] 8256f9d637f4a4fb2dab15a017032d2b7304f99d24b80562f5ab03fb5e715c25
