[INFO] cloning repository https://github.com/Mimerme/Mimerme
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Mimerme/Mimerme" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] df63a69dd00123b2eb2ab3520f84fe54a79a107d
[INFO] testing Mimerme/Mimerme against master#1871252fc8bb672d40787e67404e6eaae7059369 for pr-125151
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Mimerme/Mimerme on toolchain 1871252fc8bb672d40787e67404e6eaae7059369
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Mimerme/Mimerme
[INFO] finished tweaking git repo https://github.com/Mimerme/Mimerme
[INFO] tweaked toml for git repo https://github.com/Mimerme/Mimerme written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/Mimerme/Mimerme already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded clang-sys v0.29.2
[INFO] [stderr]   Downloaded bio-types v0.6.0
[INFO] [stderr]   Downloaded snafu v0.6.0
[INFO] [stderr]   Downloaded rust-htslib v0.29.0
[INFO] [stderr]   Downloaded snafu-derive v0.6.3
[INFO] [stderr]   Downloaded hts-sys v1.10.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4be4e33e0e674abffbb2a63f72455505ef72373a518e39f1bf453b97894ca1ec
[INFO] running `Command { std: "docker" "start" "-a" "4be4e33e0e674abffbb2a63f72455505ef72373a518e39f1bf453b97894ca1ec", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4be4e33e0e674abffbb2a63f72455505ef72373a518e39f1bf453b97894ca1ec", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4be4e33e0e674abffbb2a63f72455505ef72373a518e39f1bf453b97894ca1ec", kill_on_drop: false }`
[INFO] [stdout] 4be4e33e0e674abffbb2a63f72455505ef72373a518e39f1bf453b97894ca1ec
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 43891aae384f1ecd62ab6093dd5202f5e7dce5d0077fbfa5dc9bd7cb69134212
[INFO] running `Command { std: "docker" "start" "-a" "43891aae384f1ecd62ab6093dd5202f5e7dce5d0077fbfa5dc9bd7cb69134212", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.9
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling cc v1.0.50
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling syn v1.0.17
[INFO] [stderr]    Compiling version_check v0.9.1
[INFO] [stderr]    Compiling libc v0.2.68
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling regex-syntax v0.6.17
[INFO] [stderr]    Compiling bindgen v0.53.2
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling pkg-config v0.3.17
[INFO] [stderr]    Compiling serde v1.0.105
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling lazycell v1.2.1
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling matches v0.1.8
[INFO] [stderr]    Compiling smallvec v1.2.0
[INFO] [stderr]    Compiling nom v5.1.1
[INFO] [stderr]    Compiling unicode-bidi v0.3.4
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling aho-corasick v0.7.10
[INFO] [stderr]    Compiling clang-sys v0.29.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling unicode-normalization v0.1.12
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]    Compiling idna v0.2.0
[INFO] [stderr]    Compiling url v2.1.1
[INFO] [stderr]    Compiling regex v1.3.6
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.105
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.3
[INFO] [stderr]    Compiling snafu v0.6.0
[INFO] [stderr]    Compiling hts-sys v1.10.2
[INFO] [stderr]    Compiling bio-types v0.6.0
[INFO] [stderr]    Compiling bincode v1.2.1
[INFO] [stderr]    Compiling rust-htslib v0.29.0
[INFO] [stderr]    Compiling fmmap v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::str::Chars`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::str::Chars;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::Rev`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::iter::Rev;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Aux`
[INFO] [stdout]   --> src/main.rs:12:45
[INFO] [stdout]    |
[INFO] [stdout] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar};
[INFO] [stdout]    |                                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::convert::TryFrom`
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::convert::TryFrom;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `thread`, `time`
[INFO] [stdout]   --> src/main.rs:15:11
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::{thread, time};
[INFO] [stdout]    |           ^^^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary trailing semicolon
[INFO] [stdout]    --> src/main.rs:356:3
[INFO] [stdout]     |
[INFO] [stdout] 356 |     };
[INFO] [stdout]     |      ^ help: remove this semicolon
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:110:7
[INFO] [stdout]     |
[INFO] [stdout] 110 |         let mut c1 = remaining_query.next().unwrap();
[INFO] [stdout]     |             ----^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seed_pos`
[INFO] [stdout]    --> src/main.rs:392:7
[INFO] [stdout]     |
[INFO] [stdout] 392 |         let seed_pos = 0;
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:659:6
[INFO] [stdout]     |
[INFO] [stdout] 659 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:665:11
[INFO] [stdout]     |
[INFO] [stdout] 665 |                         let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                             ----^^^^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:669:11
[INFO] [stdout]     |
[INFO] [stdout] 669 |                         let mut split = sequence.split("\n");
[INFO] [stdout]     |                             ----^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:792:6
[INFO] [stdout]     |
[INFO] [stdout] 792 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:796:9
[INFO] [stdout]     |
[INFO] [stdout] 796 |                 let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                     ----^^^^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:800:9
[INFO] [stdout]     |
[INFO] [stdout] 800 |                 let mut split = sequence.split("\n");
[INFO] [stdout]     |                     ----^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name` and `id` are never read
[INFO] [stdout]   --> src/main.rs:62:2
[INFO] [stdout]    |
[INFO] [stdout] 61 | struct GenRead{
[INFO] [stdout]    |        ------- fields in this struct
[INFO] [stdout] 62 |     name: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 63 |     id : u32,
[INFO] [stdout]    |     ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `print_2d_vec` is never used
[INFO] [stdout]    --> src/main.rs:193:4
[INFO] [stdout]     |
[INFO] [stdout] 193 | fn print_2d_vec<T : Debug>(matrix : &Vec<Vec<T>>){
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fitting_alignment` is never used
[INFO] [stdout]    --> src/main.rs:203:4
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec<Alignment> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `add` is never used
[INFO] [stdout]    --> src/main.rs:450:4
[INFO] [stdout]     |
[INFO] [stdout] 450 | fn add(a : &mut Vec<i32>){
[INFO] [stdout]     |    ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `gold` is never used
[INFO] [stdout]    --> src/main.rs:459:4
[INFO] [stdout]     |
[INFO] [stdout] 459 | fn gold() -> (
[INFO] [stdout]     |    ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:10
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:21
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |                     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_DESERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `CIGAR` should have a snake case name
[INFO] [stdout]   --> src/main.rs:70:2
[INFO] [stdout]    |
[INFO] [stdout] 70 |     CIGAR : Vec<Cigar>,
[INFO] [stdout]    |     ^^^^^ help: convert the identifier to snake case: `cigar`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/main.rs:368:2
[INFO] [stdout]     |
[INFO] [stdout] 368 |     file.read_to_end(&mut data);
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 368 |     let _ = file.read_to_end(&mut data);
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `gap` should have an upper case name
[INFO] [stdout]    --> src/main.rs:384:8
[INFO] [stdout]     |
[INFO] [stdout] 384 |     const gap : usize = 5;
[INFO] [stdout]     |           ^^^ help: convert the identifier to upper case: `GAP`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_upper_case_globals)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:711:10
[INFO] [stdout]     |
[INFO] [stdout] 711 |     let mut L_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case: `l_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:712:10
[INFO] [stdout]     |
[INFO] [stdout] 712 |     let mut F_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col_compressed` should have a snake case name
[INFO] [stdout]    --> src/main.rs:752:10
[INFO] [stdout]     |
[INFO] [stdout] 752 |     let mut F_col_compressed = HashMap::<char, usize>::new();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 27 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 15.11s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: bindgen v0.53.2, nom v5.1.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "43891aae384f1ecd62ab6093dd5202f5e7dce5d0077fbfa5dc9bd7cb69134212", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "43891aae384f1ecd62ab6093dd5202f5e7dce5d0077fbfa5dc9bd7cb69134212", kill_on_drop: false }`
[INFO] [stdout] 43891aae384f1ecd62ab6093dd5202f5e7dce5d0077fbfa5dc9bd7cb69134212
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4fb8ac73f59144ee1636e95ac69df98ddd279a9cd62af14e4afbe436d7971395
[INFO] running `Command { std: "docker" "start" "-a" "4fb8ac73f59144ee1636e95ac69df98ddd279a9cd62af14e4afbe436d7971395", kill_on_drop: false }`
[INFO] [stderr]    Compiling fmmap v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::str::Chars`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::str::Chars;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::Rev`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::iter::Rev;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Aux`
[INFO] [stdout]   --> src/main.rs:12:45
[INFO] [stdout]    |
[INFO] [stdout] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar};
[INFO] [stdout]    |                                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::convert::TryFrom`
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::convert::TryFrom;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `thread`, `time`
[INFO] [stdout]   --> src/main.rs:15:11
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::{thread, time};
[INFO] [stdout]    |           ^^^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary trailing semicolon
[INFO] [stdout]    --> src/main.rs:356:3
[INFO] [stdout]     |
[INFO] [stdout] 356 |     };
[INFO] [stdout]     |      ^ help: remove this semicolon
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:110:7
[INFO] [stdout]     |
[INFO] [stdout] 110 |         let mut c1 = remaining_query.next().unwrap();
[INFO] [stdout]     |             ----^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seed_pos`
[INFO] [stdout]    --> src/main.rs:392:7
[INFO] [stdout]     |
[INFO] [stdout] 392 |         let seed_pos = 0;
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seqs`
[INFO] [stdout]    --> src/main.rs:516:16
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                ^^^^ help: if this is intentional, prefix it with an underscore: `_seqs`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `quals`
[INFO] [stdout]    --> src/main.rs:516:22
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                      ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `cigars`
[INFO] [stdout]    --> src/main.rs:516:29
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_cigars`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `name`
[INFO] [stdout]    --> src/main.rs:532:17
[INFO] [stdout]     |
[INFO] [stdout] 532 |             for name in names.iter() {
[INFO] [stdout]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_name`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `sam`
[INFO] [stdout]    --> src/main.rs:548:13
[INFO] [stdout]     |
[INFO] [stdout] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stdout]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_sam`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:548:9
[INFO] [stdout]     |
[INFO] [stdout] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stdout]     |         ----^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:659:6
[INFO] [stdout]     |
[INFO] [stdout] 659 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:665:11
[INFO] [stdout]     |
[INFO] [stdout] 665 |                         let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                             ----^^^^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:669:11
[INFO] [stdout]     |
[INFO] [stdout] 669 |                         let mut split = sequence.split("\n");
[INFO] [stdout]     |                             ----^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:792:6
[INFO] [stdout]     |
[INFO] [stdout] 792 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:796:9
[INFO] [stdout]     |
[INFO] [stdout] 796 |                 let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                     ----^^^^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:800:9
[INFO] [stdout]     |
[INFO] [stdout] 800 |                 let mut split = sequence.split("\n");
[INFO] [stdout]     |                     ----^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name` and `id` are never read
[INFO] [stdout]   --> src/main.rs:62:2
[INFO] [stdout]    |
[INFO] [stdout] 61 | struct GenRead{
[INFO] [stdout]    |        ------- fields in this struct
[INFO] [stdout] 62 |     name: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 63 |     id : u32,
[INFO] [stdout]    |     ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `print_2d_vec` is never used
[INFO] [stdout]    --> src/main.rs:193:4
[INFO] [stdout]     |
[INFO] [stdout] 193 | fn print_2d_vec<T : Debug>(matrix : &Vec<Vec<T>>){
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fitting_alignment` is never used
[INFO] [stdout]    --> src/main.rs:203:4
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec<Alignment> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:10
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:21
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |                     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_DESERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `CIGAR` should have a snake case name
[INFO] [stdout]   --> src/main.rs:70:2
[INFO] [stdout]    |
[INFO] [stdout] 70 |     CIGAR : Vec<Cigar>,
[INFO] [stdout]    |     ^^^^^ help: convert the identifier to snake case: `cigar`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/main.rs:368:2
[INFO] [stdout]     |
[INFO] [stdout] 368 |     file.read_to_end(&mut data);
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 368 |     let _ = file.read_to_end(&mut data);
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `gap` should have an upper case name
[INFO] [stdout]    --> src/main.rs:384:8
[INFO] [stdout]     |
[INFO] [stdout] 384 |     const gap : usize = 5;
[INFO] [stdout]     |           ^^^ help: convert the identifier to upper case: `GAP`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_upper_case_globals)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:711:10
[INFO] [stdout]     |
[INFO] [stdout] 711 |     let mut L_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case: `l_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:712:10
[INFO] [stdout]     |
[INFO] [stdout] 712 |     let mut F_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col_compressed` should have a snake case name
[INFO] [stdout]    --> src/main.rs:752:10
[INFO] [stdout]     |
[INFO] [stdout] 752 |     let mut F_col_compressed = HashMap::<char, usize>::new();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 31 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.76s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: bindgen v0.53.2, nom v5.1.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "4fb8ac73f59144ee1636e95ac69df98ddd279a9cd62af14e4afbe436d7971395", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4fb8ac73f59144ee1636e95ac69df98ddd279a9cd62af14e4afbe436d7971395", kill_on_drop: false }`
[INFO] [stdout] 4fb8ac73f59144ee1636e95ac69df98ddd279a9cd62af14e4afbe436d7971395
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 70f86380f2c26e8fde4c6aa82e31307f0b463dfd3cff8f64698fae98f9255b18
[INFO] running `Command { std: "docker" "start" "-a" "70f86380f2c26e8fde4c6aa82e31307f0b463dfd3cff8f64698fae98f9255b18", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `std::str::Chars`
[INFO] [stderr]  --> src/main.rs:8:5
[INFO] [stderr]   |
[INFO] [stderr] 8 | use std::str::Chars;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::iter::Rev`
[INFO] [stderr]  --> src/main.rs:9:5
[INFO] [stderr]   |
[INFO] [stderr] 9 | use std::iter::Rev;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `Aux`
[INFO] [stderr]   --> src/main.rs:12:45
[INFO] [stderr]    |
[INFO] [stderr] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar};
[INFO] [stderr]    |                                             ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::convert::TryFrom`
[INFO] [stderr]   --> src/main.rs:14:5
[INFO] [stderr]    |
[INFO] [stderr] 14 | use std::convert::TryFrom;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `thread`, `time`
[INFO] [stderr]   --> src/main.rs:15:11
[INFO] [stderr]    |
[INFO] [stderr] 15 | use std::{thread, time};
[INFO] [stderr]    |           ^^^^^^  ^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary trailing semicolon
[INFO] [stderr]    --> src/main.rs:356:3
[INFO] [stderr]     |
[INFO] [stderr] 356 |     };
[INFO] [stderr]     |      ^ help: remove this semicolon
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:110:7
[INFO] [stderr]     |
[INFO] [stderr] 110 |         let mut c1 = remaining_query.next().unwrap();
[INFO] [stderr]     |             ----^^
[INFO] [stderr]     |             |
[INFO] [stderr]     |             help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `seed_pos`
[INFO] [stderr]    --> src/main.rs:392:7
[INFO] [stderr]     |
[INFO] [stderr] 392 |         let seed_pos = 0;
[INFO] [stderr]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `seqs`
[INFO] [stderr]    --> src/main.rs:516:16
[INFO] [stderr]     |
[INFO] [stderr] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stderr]     |                ^^^^ help: if this is intentional, prefix it with an underscore: `_seqs`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `quals`
[INFO] [stderr]    --> src/main.rs:516:22
[INFO] [stderr]     |
[INFO] [stderr] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stderr]     |                      ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `cigars`
[INFO] [stderr]    --> src/main.rs:516:29
[INFO] [stderr]     |
[INFO] [stderr] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stderr]     |                             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_cigars`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `name`
[INFO] [stderr]    --> src/main.rs:532:17
[INFO] [stderr]     |
[INFO] [stderr] 532 |             for name in names.iter() {
[INFO] [stderr]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_name`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `sam`
[INFO] [stderr]    --> src/main.rs:548:13
[INFO] [stderr]     |
[INFO] [stderr] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stderr]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_sam`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:548:9
[INFO] [stderr]     |
[INFO] [stderr] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stderr]     |         ----^^^
[INFO] [stderr]     |         |
[INFO] [stderr]     |         help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:659:6
[INFO] [stderr]     |
[INFO] [stderr] 659 |     let mut sequence = 
[INFO] [stderr]     |         ----^^^^^^^^
[INFO] [stderr]     |         |
[INFO] [stderr]     |         help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:665:11
[INFO] [stderr]     |
[INFO] [stderr] 665 |                         let mut sequence = fs::read_to_string(input_file)
[INFO] [stderr]     |                             ----^^^^^^^^
[INFO] [stderr]     |                             |
[INFO] [stderr]     |                             help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:669:11
[INFO] [stderr]     |
[INFO] [stderr] 669 |                         let mut split = sequence.split("\n");
[INFO] [stderr]     |                             ----^^^^^
[INFO] [stderr]     |                             |
[INFO] [stderr]     |                             help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:792:6
[INFO] [stderr]     |
[INFO] [stderr] 792 |     let mut sequence = 
[INFO] [stderr]     |         ----^^^^^^^^
[INFO] [stderr]     |         |
[INFO] [stderr]     |         help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:796:9
[INFO] [stderr]     |
[INFO] [stderr] 796 |                 let mut sequence = fs::read_to_string(input_file)
[INFO] [stderr]     |                     ----^^^^^^^^
[INFO] [stderr]     |                     |
[INFO] [stderr]     |                     help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:800:9
[INFO] [stderr]     |
[INFO] [stderr] 800 |                 let mut split = sequence.split("\n");
[INFO] [stderr]     |                     ----^^^^^
[INFO] [stderr]     |                     |
[INFO] [stderr]     |                     help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: fields `name` and `id` are never read
[INFO] [stderr]   --> src/main.rs:62:2
[INFO] [stderr]    |
[INFO] [stderr] 61 | struct GenRead{
[INFO] [stderr]    |        ------- fields in this struct
[INFO] [stderr] 62 |     name: String,
[INFO] [stderr]    |     ^^^^
[INFO] [stderr] 63 |     id : u32,
[INFO] [stderr]    |     ^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function `print_2d_vec` is never used
[INFO] [stderr]    --> src/main.rs:193:4
[INFO] [stderr]     |
[INFO] [stderr] 193 | fn print_2d_vec<T : Debug>(matrix : &Vec<Vec<T>>){
[INFO] [stderr]     |    ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `fitting_alignment` is never used
[INFO] [stderr]    --> src/main.rs:203:4
[INFO] [stderr]     |
[INFO] [stderr] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec<Alignment> {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stderr]   --> src/main.rs:50:10
[INFO] [stderr]    |
[INFO] [stderr] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stderr]    |          ^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_FmIndex`
[INFO] [stderr]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stderr]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stderr]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stderr]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stderr]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stderr]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stderr]   --> src/main.rs:50:21
[INFO] [stderr]    |
[INFO] [stderr] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stderr]    |                     ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = help: move this `impl` block outside the of the current constant `_IMPL_DESERIALIZE_FOR_FmIndex`
[INFO] [stderr]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stderr]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stderr]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stderr]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stderr]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: structure field `CIGAR` should have a snake case name
[INFO] [stderr]   --> src/main.rs:70:2
[INFO] [stderr]    |
[INFO] [stderr] 70 |     CIGAR : Vec<Cigar>,
[INFO] [stderr]    |     ^^^^^ help: convert the identifier to snake case: `cigar`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(non_snake_case)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused `Result` that must be used
[INFO] [stderr]    --> src/main.rs:368:2
[INFO] [stderr]     |
[INFO] [stderr] 368 |     file.read_to_end(&mut data);
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stderr]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stderr] help: use `let _ = ...` to ignore the resulting value
[INFO] [stderr]     |
[INFO] [stderr] 368 |     let _ = file.read_to_end(&mut data);
[INFO] [stderr]     |     +++++++
[INFO] [stderr] 
[INFO] [stderr] warning: constant `gap` should have an upper case name
[INFO] [stderr]    --> src/main.rs:384:8
[INFO] [stderr]     |
[INFO] [stderr] 384 |     const gap : usize = 5;
[INFO] [stderr]     |           ^^^ help: convert the identifier to upper case: `GAP`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(non_upper_case_globals)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable `L_col` should have a snake case name
[INFO] [stderr]    --> src/main.rs:711:10
[INFO] [stderr]     |
[INFO] [stderr] 711 |     let mut L_col = Vec::<char>::new();
[INFO] [stderr]     |             ^^^^^ help: convert the identifier to snake case: `l_col`
[INFO] [stderr] 
[INFO] [stderr] warning: variable `F_col` should have a snake case name
[INFO] [stderr]    --> src/main.rs:712:10
[INFO] [stderr]     |
[INFO] [stderr] 712 |     let mut F_col = Vec::<char>::new();
[INFO] [stderr]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col`
[INFO] [stderr] 
[INFO] [stderr] warning: variable `F_col_compressed` should have a snake case name
[INFO] [stderr]    --> src/main.rs:752:10
[INFO] [stderr]     |
[INFO] [stderr] 752 |     let mut F_col_compressed = HashMap::<char, usize>::new();
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed`
[INFO] [stderr] 
[INFO] [stderr] warning: `fmmap` (bin "fmmap" test) generated 31 warnings (run `cargo fix --bin "fmmap" --tests` to apply 13 suggestions)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.06s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: bindgen v0.53.2, nom v5.1.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/fmmap-2d0b6a462ada21e7)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test test_borrow ... ok
[INFO] [stderr] [E::hts_open_format] Failed to open file "test123.sam" : Read-only file system
[INFO] [stdout] test test_fitting_alignment2 ... ok
[INFO] [stderr] [E::hts_open_format] Failed to open file "yeet.sam" : Read-only file system
[INFO] [stdout] test test_write_sam2 ... ok
[INFO] [stdout] test test_write_sam ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- test_write_sam stdout ----
[INFO] [stdout] thread 'test_write_sam' panicked at src/main.rs:530:14:
[INFO] [stdout] Error opening file.
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x560f6fd91bc5 - std::backtrace_rs::backtrace::libunwind::trace::h59d96bdb08384354
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/../../backtrace/src/backtrace/libunwind.rs:105:5
[INFO] [stdout]    1:     0x560f6fd91bc5 - std::backtrace_rs::backtrace::trace_unsynchronized::h9cf5becacfc93fba
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stdout]    2:     0x560f6fd91bc5 - std::sys_common::backtrace::_print_fmt::h10b76d10405dbd48
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:68:5
[INFO] [stdout]    3:     0x560f6fd91bc5 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h6ed9e62a156d84e4
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:44:22
[INFO] [stdout]    4:     0x560f6fdb849b - core::fmt::rt::Argument::fmt::h645c680983f03c9f
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/fmt/rt.rs:165:63
[INFO] [stdout]    5:     0x560f6fdb849b - core::fmt::write::h8bcd80919a02be29
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/fmt/mod.rs:1169:21
[INFO] [stdout]    6:     0x560f6fd8f3ff - std::io::Write::write_fmt::h8d0c47c662cad79c
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/io/mod.rs:1835:15
[INFO] [stdout]    7:     0x560f6fd9199e - std::sys_common::backtrace::_print::h6306f131a28d62b0
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:47:5
[INFO] [stdout]    8:     0x560f6fd9199e - std::sys_common::backtrace::print::h7079288e0a26dfcc
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:34:9
[INFO] [stdout]    9:     0x560f6fd933c9 - std::panicking::default_hook::{{closure}}::hb063ecec81a736ba
[INFO] [stdout]   10:     0x560f6fd9308e - std::panicking::default_hook::hd56ee406bf547b5c
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:295:9
[INFO] [stdout]   11:     0x560f6fcfbeba - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::he5eacdef44c8728f
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/alloc/src/boxed.rs:2036:9
[INFO] [stdout]   12:     0x560f6fcfbeba - test::test_main::{{closure}}::h0ec9aed229e79095
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:137:21
[INFO] [stdout]   13:     0x560f6fd939cb - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hcbd0d80e1ad4e4f9
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/alloc/src/boxed.rs:2036:9
[INFO] [stdout]   14:     0x560f6fd939cb - std::panicking::rust_panic_with_hook::h624aa3ca42ebb8f2
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:799:13
[INFO] [stdout]   15:     0x560f6fd93744 - std::panicking::begin_panic_handler::{{closure}}::hbc4e76194a5e287c
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:664:13
[INFO] [stdout]   16:     0x560f6fd92089 - std::sys_common::backtrace::__rust_end_short_backtrace::h847fedc9d1ff7b6d
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:171:18
[INFO] [stdout]   17:     0x560f6fd93477 - rust_begin_unwind
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:652:5
[INFO] [stdout]   18:     0x560f6fcbbe13 - core::panicking::panic_fmt::hec11a924b87ce965
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/panicking.rs:72:14
[INFO] [stdout]   19:     0x560f6fdb72fc - core::panicking::panic_display::h269ceaaee0e836fe
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/panicking.rs:262:5
[INFO] [stdout]   20:     0x560f6fcbbddc - core::option::expect_failed::h2224e5e9252b5b20
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/option.rs:1994:5
[INFO] [stdout]   21:     0x560f6fcbfb89 - core::option::Option<T>::expect::hfe03d8a3956aadba
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/option.rs:895:21
[INFO] [stdout]   22:     0x560f6fcc415a - fmmap::test_write_sam::h34545a4629a04646
[INFO] [stdout]                                at /opt/rustwide/workdir/src/main.rs:519:27
[INFO] [stdout]   23:     0x560f6fcc3e37 - fmmap::test_write_sam::{{closure}}::hc53b911d832f2e76
[INFO] [stdout]                                at /opt/rustwide/workdir/src/main.rs:514:20
[INFO] [stdout]   24:     0x560f6fcbddf6 - core::ops::function::FnOnce::call_once::h8162077f0e0e904d
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x560f6fd0089b - core::ops::function::FnOnce::call_once::h2e43a8f6f3d94b99
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   26:     0x560f6fd0089b - test::__rust_begin_short_backtrace::h214c9f2d2d3fee90
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:625:18
[INFO] [stdout]   27:     0x560f6fcfffa1 - test::run_test_in_process::{{closure}}::h510b7ba7990692a5
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:648:60
[INFO] [stdout]   28:     0x560f6fcfffa1 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h4157186197a93871
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   29:     0x560f6fcfffa1 - std::panicking::try::do_call::h1bf2463bccd4b28c
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:559:40
[INFO] [stdout]   30:     0x560f6fcfffa1 - std::panicking::try::hd6d4808c9fab4fa5
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:523:19
[INFO] [stdout]   31:     0x560f6fcfffa1 - std::panic::catch_unwind::hd5641d97d123f9f2
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panic.rs:149:14
[INFO] [stdout]   32:     0x560f6fcfffa1 - test::run_test_in_process::hc273b71c8b878a4c
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:648:27
[INFO] [stdout]   33:     0x560f6fcfffa1 - test::run_test::{{closure}}::h6838df834eb8467e
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:569:43
[INFO] [stdout]   34:     0x560f6fcc8964 - test::run_test::{{closure}}::h608b98ecff5665fb
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/test/src/lib.rs:599:41
[INFO] [stdout]   35:     0x560f6fcc8964 - std::sys_common::backtrace::__rust_begin_short_backtrace::hdc4182b97d1042e9
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys_common/backtrace.rs:155:18
[INFO] [stdout]   36:     0x560f6fccd392 - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h571773fd21d674c8
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/thread/mod.rs:542:17
[INFO] [stdout]   37:     0x560f6fccd392 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hdcd384cf2fa70ba3
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   38:     0x560f6fccd392 - std::panicking::try::do_call::h4f1a44bd81423be1
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:559:40
[INFO] [stdout]   39:     0x560f6fccd392 - std::panicking::try::h5e02afcb81dcd361
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panicking.rs:523:19
[INFO] [stdout]   40:     0x560f6fccd392 - std::panic::catch_unwind::h022f75775bfd8c45
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/panic.rs:149:14
[INFO] [stdout]   41:     0x560f6fccd392 - std::thread::Builder::spawn_unchecked_::{{closure}}::hf5a62e9e4e6df1f8
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/thread/mod.rs:541:30
[INFO] [stdout]   42:     0x560f6fccd392 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h6d56360aeb9509a7
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   43:     0x560f6fd97c3b - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h7a343dc551c06baa
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/alloc/src/boxed.rs:2022:9
[INFO] [stdout]   44:     0x560f6fd97c3b - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h30b8111cbaa644f3
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/alloc/src/boxed.rs:2022:9
[INFO] [stdout]   45:     0x560f6fd97c3b - std::sys::pal::unix::thread::Thread::new::thread_start::h7404e134e61e7a11
[INFO] [stdout]                                at /rustc/1871252fc8bb672d40787e67404e6eaae7059369/library/std/src/sys/pal/unix/thread.rs:108:17
[INFO] [stdout]   46:     0x7fae309bfac3 - <unknown>
[INFO] [stdout]   47:     0x7fae30a50a04 - __clone
[INFO] [stdout]   48:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     test_write_sam
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 3 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--bin fmmap`
[INFO] running `Command { std: "docker" "inspect" "70f86380f2c26e8fde4c6aa82e31307f0b463dfd3cff8f64698fae98f9255b18", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "70f86380f2c26e8fde4c6aa82e31307f0b463dfd3cff8f64698fae98f9255b18", kill_on_drop: false }`
[INFO] [stdout] 70f86380f2c26e8fde4c6aa82e31307f0b463dfd3cff8f64698fae98f9255b18
[INFO] testing Mimerme/Mimerme against try#b642703cf9526da1e72c0b6755753b939a9c6b6d for pr-125151
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMimerme%2FMimerme" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Mimerme/Mimerme on toolchain b642703cf9526da1e72c0b6755753b939a9c6b6d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Mimerme/Mimerme
[INFO] finished tweaking git repo https://github.com/Mimerme/Mimerme
[INFO] tweaked toml for git repo https://github.com/Mimerme/Mimerme written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/Mimerme/Mimerme already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 66feabbf8f1c59df18997d8abe75ef8cd519b7a99611a8dcd30854f6bf0398af
[INFO] running `Command { std: "docker" "start" "-a" "66feabbf8f1c59df18997d8abe75ef8cd519b7a99611a8dcd30854f6bf0398af", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "66feabbf8f1c59df18997d8abe75ef8cd519b7a99611a8dcd30854f6bf0398af", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "66feabbf8f1c59df18997d8abe75ef8cd519b7a99611a8dcd30854f6bf0398af", kill_on_drop: false }`
[INFO] [stdout] 66feabbf8f1c59df18997d8abe75ef8cd519b7a99611a8dcd30854f6bf0398af
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b59f5b00191e5e9c7cf5e494b57d4591ff1b571371d3bf68297620306c8041de
[INFO] running `Command { std: "docker" "start" "-a" "b59f5b00191e5e9c7cf5e494b57d4591ff1b571371d3bf68297620306c8041de", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.9
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling cc v1.0.50
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling syn v1.0.17
[INFO] [stderr]    Compiling version_check v0.9.1
[INFO] [stderr]    Compiling libc v0.2.68
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling regex-syntax v0.6.17
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling bindgen v0.53.2
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling pkg-config v0.3.17
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling lazycell v1.2.1
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling serde v1.0.105
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling nom v5.1.1
[INFO] [stderr]    Compiling matches v0.1.8
[INFO] [stderr]    Compiling smallvec v1.2.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling unicode-bidi v0.3.4
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling aho-corasick v0.7.10
[INFO] [stderr]    Compiling clang-sys v0.29.2
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling unicode-normalization v0.1.12
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling idna v0.2.0
[INFO] [stderr]    Compiling url v2.1.1
[INFO] [stderr]    Compiling regex v1.3.6
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.105
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.3
[INFO] [stderr]    Compiling snafu v0.6.0
[INFO] [stderr]    Compiling hts-sys v1.10.2
[INFO] [stderr]    Compiling bio-types v0.6.0
[INFO] [stderr]    Compiling bincode v1.2.1
[INFO] [stderr]    Compiling rust-htslib v0.29.0
[INFO] [stderr]    Compiling fmmap v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::str::Chars`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::str::Chars;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::Rev`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::iter::Rev;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Aux`
[INFO] [stdout]   --> src/main.rs:12:45
[INFO] [stdout]    |
[INFO] [stdout] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar};
[INFO] [stdout]    |                                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::convert::TryFrom`
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::convert::TryFrom;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `thread`, `time`
[INFO] [stdout]   --> src/main.rs:15:11
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::{thread, time};
[INFO] [stdout]    |           ^^^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary trailing semicolon
[INFO] [stdout]    --> src/main.rs:356:3
[INFO] [stdout]     |
[INFO] [stdout] 356 |     };
[INFO] [stdout]     |      ^ help: remove this semicolon
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:110:7
[INFO] [stdout]     |
[INFO] [stdout] 110 |         let mut c1 = remaining_query.next().unwrap();
[INFO] [stdout]     |             ----^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seed_pos`
[INFO] [stdout]    --> src/main.rs:392:7
[INFO] [stdout]     |
[INFO] [stdout] 392 |         let seed_pos = 0;
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:659:6
[INFO] [stdout]     |
[INFO] [stdout] 659 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:665:11
[INFO] [stdout]     |
[INFO] [stdout] 665 |                         let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                             ----^^^^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:669:11
[INFO] [stdout]     |
[INFO] [stdout] 669 |                         let mut split = sequence.split("\n");
[INFO] [stdout]     |                             ----^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:792:6
[INFO] [stdout]     |
[INFO] [stdout] 792 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:796:9
[INFO] [stdout]     |
[INFO] [stdout] 796 |                 let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                     ----^^^^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:800:9
[INFO] [stdout]     |
[INFO] [stdout] 800 |                 let mut split = sequence.split("\n");
[INFO] [stdout]     |                     ----^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name` and `id` are never read
[INFO] [stdout]   --> src/main.rs:62:2
[INFO] [stdout]    |
[INFO] [stdout] 61 | struct GenRead{
[INFO] [stdout]    |        ------- fields in this struct
[INFO] [stdout] 62 |     name: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 63 |     id : u32,
[INFO] [stdout]    |     ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `print_2d_vec` is never used
[INFO] [stdout]    --> src/main.rs:193:4
[INFO] [stdout]     |
[INFO] [stdout] 193 | fn print_2d_vec<T : Debug>(matrix : &Vec<Vec<T>>){
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fitting_alignment` is never used
[INFO] [stdout]    --> src/main.rs:203:4
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec<Alignment> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `add` is never used
[INFO] [stdout]    --> src/main.rs:450:4
[INFO] [stdout]     |
[INFO] [stdout] 450 | fn add(a : &mut Vec<i32>){
[INFO] [stdout]     |    ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `gold` is never used
[INFO] [stdout]    --> src/main.rs:459:4
[INFO] [stdout]     |
[INFO] [stdout] 459 | fn gold() -> (
[INFO] [stdout]     |    ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:10
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:21
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |                     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_DESERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `CIGAR` should have a snake case name
[INFO] [stdout]   --> src/main.rs:70:2
[INFO] [stdout]    |
[INFO] [stdout] 70 |     CIGAR : Vec<Cigar>,
[INFO] [stdout]    |     ^^^^^ help: convert the identifier to snake case: `cigar`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/main.rs:368:2
[INFO] [stdout]     |
[INFO] [stdout] 368 |     file.read_to_end(&mut data);
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 368 |     let _ = file.read_to_end(&mut data);
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `gap` should have an upper case name
[INFO] [stdout]    --> src/main.rs:384:8
[INFO] [stdout]     |
[INFO] [stdout] 384 |     const gap : usize = 5;
[INFO] [stdout]     |           ^^^ help: convert the identifier to upper case: `GAP`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_upper_case_globals)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:711:10
[INFO] [stdout]     |
[INFO] [stdout] 711 |     let mut L_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case: `l_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:712:10
[INFO] [stdout]     |
[INFO] [stdout] 712 |     let mut F_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col_compressed` should have a snake case name
[INFO] [stdout]    --> src/main.rs:752:10
[INFO] [stdout]     |
[INFO] [stdout] 752 |     let mut F_col_compressed = HashMap::<char, usize>::new();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 27 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 14.53s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: bindgen v0.53.2, nom v5.1.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "b59f5b00191e5e9c7cf5e494b57d4591ff1b571371d3bf68297620306c8041de", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b59f5b00191e5e9c7cf5e494b57d4591ff1b571371d3bf68297620306c8041de", kill_on_drop: false }`
[INFO] [stdout] b59f5b00191e5e9c7cf5e494b57d4591ff1b571371d3bf68297620306c8041de
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 390552fd480b1d9eb6bdf33775650a9664750caef3cc1f7912bd186e9c0b2a31
[INFO] running `Command { std: "docker" "start" "-a" "390552fd480b1d9eb6bdf33775650a9664750caef3cc1f7912bd186e9c0b2a31", kill_on_drop: false }`
[INFO] [stderr]    Compiling fmmap v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::str::Chars`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::str::Chars;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::Rev`
[INFO] [stdout]  --> src/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::iter::Rev;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Aux`
[INFO] [stdout]   --> src/main.rs:12:45
[INFO] [stdout]    |
[INFO] [stdout] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar};
[INFO] [stdout]    |                                             ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::convert::TryFrom`
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::convert::TryFrom;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `thread`, `time`
[INFO] [stdout]   --> src/main.rs:15:11
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::{thread, time};
[INFO] [stdout]    |           ^^^^^^  ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary trailing semicolon
[INFO] [stdout]    --> src/main.rs:356:3
[INFO] [stdout]     |
[INFO] [stdout] 356 |     };
[INFO] [stdout]     |      ^ help: remove this semicolon
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:110:7
[INFO] [stdout]     |
[INFO] [stdout] 110 |         let mut c1 = remaining_query.next().unwrap();
[INFO] [stdout]     |             ----^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seed_pos`
[INFO] [stdout]    --> src/main.rs:392:7
[INFO] [stdout]     |
[INFO] [stdout] 392 |         let seed_pos = 0;
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seqs`
[INFO] [stdout]    --> src/main.rs:516:16
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                ^^^^ help: if this is intentional, prefix it with an underscore: `_seqs`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `quals`
[INFO] [stdout]    --> src/main.rs:516:22
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                      ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `cigars`
[INFO] [stdout]    --> src/main.rs:516:29
[INFO] [stdout]     |
[INFO] [stdout] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stdout]     |                             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_cigars`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `name`
[INFO] [stdout]    --> src/main.rs:532:17
[INFO] [stdout]     |
[INFO] [stdout] 532 |             for name in names.iter() {
[INFO] [stdout]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_name`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `sam`
[INFO] [stdout]    --> src/main.rs:548:13
[INFO] [stdout]     |
[INFO] [stdout] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stdout]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_sam`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:548:9
[INFO] [stdout]     |
[INFO] [stdout] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stdout]     |         ----^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:659:6
[INFO] [stdout]     |
[INFO] [stdout] 659 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:665:11
[INFO] [stdout]     |
[INFO] [stdout] 665 |                         let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                             ----^^^^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:669:11
[INFO] [stdout]     |
[INFO] [stdout] 669 |                         let mut split = sequence.split("\n");
[INFO] [stdout]     |                             ----^^^^^
[INFO] [stdout]     |                             |
[INFO] [stdout]     |                             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:792:6
[INFO] [stdout]     |
[INFO] [stdout] 792 |     let mut sequence = 
[INFO] [stdout]     |         ----^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:796:9
[INFO] [stdout]     |
[INFO] [stdout] 796 |                 let mut sequence = fs::read_to_string(input_file)
[INFO] [stdout]     |                     ----^^^^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:800:9
[INFO] [stdout]     |
[INFO] [stdout] 800 |                 let mut split = sequence.split("\n");
[INFO] [stdout]     |                     ----^^^^^
[INFO] [stdout]     |                     |
[INFO] [stdout]     |                     help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name` and `id` are never read
[INFO] [stdout]   --> src/main.rs:62:2
[INFO] [stdout]    |
[INFO] [stdout] 61 | struct GenRead{
[INFO] [stdout]    |        ------- fields in this struct
[INFO] [stdout] 62 |     name: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 63 |     id : u32,
[INFO] [stdout]    |     ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `print_2d_vec` is never used
[INFO] [stdout]    --> src/main.rs:193:4
[INFO] [stdout]     |
[INFO] [stdout] 193 | fn print_2d_vec<T : Debug>(matrix : &Vec<Vec<T>>){
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fitting_alignment` is never used
[INFO] [stdout]    --> src/main.rs:203:4
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec<Alignment> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:10
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/main.rs:50:21
[INFO] [stdout]    |
[INFO] [stdout] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stdout]    |                     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_DESERIALIZE_FOR_FmIndex`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `CIGAR` should have a snake case name
[INFO] [stdout]   --> src/main.rs:70:2
[INFO] [stdout]    |
[INFO] [stdout] 70 |     CIGAR : Vec<Cigar>,
[INFO] [stdout]    |     ^^^^^ help: convert the identifier to snake case: `cigar`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/main.rs:368:2
[INFO] [stdout]     |
[INFO] [stdout] 368 |     file.read_to_end(&mut data);
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 368 |     let _ = file.read_to_end(&mut data);
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `gap` should have an upper case name
[INFO] [stdout]    --> src/main.rs:384:8
[INFO] [stdout]     |
[INFO] [stdout] 384 |     const gap : usize = 5;
[INFO] [stdout]     |           ^^^ help: convert the identifier to upper case: `GAP`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_upper_case_globals)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:711:10
[INFO] [stdout]     |
[INFO] [stdout] 711 |     let mut L_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case: `l_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col` should have a snake case name
[INFO] [stdout]    --> src/main.rs:712:10
[INFO] [stdout]     |
[INFO] [stdout] 712 |     let mut F_col = Vec::<char>::new();
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F_col_compressed` should have a snake case name
[INFO] [stdout]    --> src/main.rs:752:10
[INFO] [stdout]     |
[INFO] [stdout] 752 |     let mut F_col_compressed = HashMap::<char, usize>::new();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 31 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.73s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: bindgen v0.53.2, nom v5.1.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "390552fd480b1d9eb6bdf33775650a9664750caef3cc1f7912bd186e9c0b2a31", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "390552fd480b1d9eb6bdf33775650a9664750caef3cc1f7912bd186e9c0b2a31", kill_on_drop: false }`
[INFO] [stdout] 390552fd480b1d9eb6bdf33775650a9664750caef3cc1f7912bd186e9c0b2a31
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 14ea7f976265c2f64231fcaadb576c4d9fed8324eae0f85884f0203fd36a7b2a
[INFO] running `Command { std: "docker" "start" "-a" "14ea7f976265c2f64231fcaadb576c4d9fed8324eae0f85884f0203fd36a7b2a", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `std::str::Chars`
[INFO] [stderr]  --> src/main.rs:8:5
[INFO] [stderr]   |
[INFO] [stderr] 8 | use std::str::Chars;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::iter::Rev`
[INFO] [stderr]  --> src/main.rs:9:5
[INFO] [stderr]   |
[INFO] [stderr] 9 | use std::iter::Rev;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `Aux`
[INFO] [stderr]   --> src/main.rs:12:45
[INFO] [stderr]    |
[INFO] [stderr] 12 | use rust_htslib::bam::record::{CigarString, Aux, Cigar};
[INFO] [stderr]    |                                             ^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::convert::TryFrom`
[INFO] [stderr]   --> src/main.rs:14:5
[INFO] [stderr]    |
[INFO] [stderr] 14 | use std::convert::TryFrom;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `thread`, `time`
[INFO] [stderr]   --> src/main.rs:15:11
[INFO] [stderr]    |
[INFO] [stderr] 15 | use std::{thread, time};
[INFO] [stderr]    |           ^^^^^^  ^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary trailing semicolon
[INFO] [stderr]    --> src/main.rs:356:3
[INFO] [stderr]     |
[INFO] [stderr] 356 |     };
[INFO] [stderr]     |      ^ help: remove this semicolon
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(redundant_semicolons)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:110:7
[INFO] [stderr]     |
[INFO] [stderr] 110 |         let mut c1 = remaining_query.next().unwrap();
[INFO] [stderr]     |             ----^^
[INFO] [stderr]     |             |
[INFO] [stderr]     |             help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `seed_pos`
[INFO] [stderr]    --> src/main.rs:392:7
[INFO] [stderr]     |
[INFO] [stderr] 392 |         let seed_pos = 0;
[INFO] [stderr]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_seed_pos`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `seqs`
[INFO] [stderr]    --> src/main.rs:516:16
[INFO] [stderr]     |
[INFO] [stderr] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stderr]     |                ^^^^ help: if this is intentional, prefix it with an underscore: `_seqs`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `quals`
[INFO] [stderr]    --> src/main.rs:516:22
[INFO] [stderr]     |
[INFO] [stderr] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stderr]     |                      ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `cigars`
[INFO] [stderr]    --> src/main.rs:516:29
[INFO] [stderr]     |
[INFO] [stderr] 516 | let (names, _, seqs, quals, cigars) = gold();
[INFO] [stderr]     |                             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_cigars`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `name`
[INFO] [stderr]    --> src/main.rs:532:17
[INFO] [stderr]     |
[INFO] [stderr] 532 |             for name in names.iter() {
[INFO] [stderr]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_name`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `sam`
[INFO] [stderr]    --> src/main.rs:548:13
[INFO] [stderr]     |
[INFO] [stderr] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stderr]     |             ^^^ help: if this is intentional, prefix it with an underscore: `_sam`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:548:9
[INFO] [stderr]     |
[INFO] [stderr] 548 |     let mut sam = Writer::from_path("test123.sam", &header, Format::SAM);
[INFO] [stderr]     |         ----^^^
[INFO] [stderr]     |         |
[INFO] [stderr]     |         help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:659:6
[INFO] [stderr]     |
[INFO] [stderr] 659 |     let mut sequence = 
[INFO] [stderr]     |         ----^^^^^^^^
[INFO] [stderr]     |         |
[INFO] [stderr]     |         help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:665:11
[INFO] [stderr]     |
[INFO] [stderr] 665 |                         let mut sequence = fs::read_to_string(input_file)
[INFO] [stderr]     |                             ----^^^^^^^^
[INFO] [stderr]     |                             |
[INFO] [stderr]     |                             help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:669:11
[INFO] [stderr]     |
[INFO] [stderr] 669 |                         let mut split = sequence.split("\n");
[INFO] [stderr]     |                             ----^^^^^
[INFO] [stderr]     |                             |
[INFO] [stderr]     |                             help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:792:6
[INFO] [stderr]     |
[INFO] [stderr] 792 |     let mut sequence = 
[INFO] [stderr]     |         ----^^^^^^^^
[INFO] [stderr]     |         |
[INFO] [stderr]     |         help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:796:9
[INFO] [stderr]     |
[INFO] [stderr] 796 |                 let mut sequence = fs::read_to_string(input_file)
[INFO] [stderr]     |                     ----^^^^^^^^
[INFO] [stderr]     |                     |
[INFO] [stderr]     |                     help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:800:9
[INFO] [stderr]     |
[INFO] [stderr] 800 |                 let mut split = sequence.split("\n");
[INFO] [stderr]     |                     ----^^^^^
[INFO] [stderr]     |                     |
[INFO] [stderr]     |                     help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: fields `name` and `id` are never read
[INFO] [stderr]   --> src/main.rs:62:2
[INFO] [stderr]    |
[INFO] [stderr] 61 | struct GenRead{
[INFO] [stderr]    |        ------- fields in this struct
[INFO] [stderr] 62 |     name: String,
[INFO] [stderr]    |     ^^^^
[INFO] [stderr] 63 |     id : u32,
[INFO] [stderr]    |     ^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function `print_2d_vec` is never used
[INFO] [stderr]    --> src/main.rs:193:4
[INFO] [stderr]     |
[INFO] [stderr] 193 | fn print_2d_vec<T : Debug>(matrix : &Vec<Vec<T>>){
[INFO] [stderr]     |    ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `fitting_alignment` is never used
[INFO] [stderr]    --> src/main.rs:203:4
[INFO] [stderr]     |
[INFO] [stderr] 203 | fn fitting_alignment(x : &str, y : &str) -> Vec<Alignment> {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stderr]   --> src/main.rs:50:10
[INFO] [stderr]    |
[INFO] [stderr] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stderr]    |          ^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = help: move this `impl` block outside the of the current constant `_IMPL_SERIALIZE_FOR_FmIndex`
[INFO] [stderr]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stderr]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stderr]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stderr]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stderr]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stderr]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stderr]   --> src/main.rs:50:21
[INFO] [stderr]    |
[INFO] [stderr] 50 | #[derive(Serialize, Deserialize, Debug)]
[INFO] [stderr]    |                     ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = help: move this `impl` block outside the of the current constant `_IMPL_DESERIALIZE_FOR_FmIndex`
[INFO] [stderr]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stderr]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stderr]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stderr]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stderr]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: structure field `CIGAR` should have a snake case name
[INFO] [stderr]   --> src/main.rs:70:2
[INFO] [stderr]    |
[INFO] [stderr] 70 |     CIGAR : Vec<Cigar>,
[INFO] [stderr]    |     ^^^^^ help: convert the identifier to snake case: `cigar`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(non_snake_case)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused `Result` that must be used
[INFO] [stderr]    --> src/main.rs:368:2
[INFO] [stderr]     |
[INFO] [stderr] 368 |     file.read_to_end(&mut data);
[INFO] [stderr]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stderr]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stderr] help: use `let _ = ...` to ignore the resulting value
[INFO] [stderr]     |
[INFO] [stderr] 368 |     let _ = file.read_to_end(&mut data);
[INFO] [stderr]     |     +++++++
[INFO] [stderr] 
[INFO] [stderr] warning: constant `gap` should have an upper case name
[INFO] [stderr]    --> src/main.rs:384:8
[INFO] [stderr]     |
[INFO] [stderr] 384 |     const gap : usize = 5;
[INFO] [stderr]     |           ^^^ help: convert the identifier to upper case: `GAP`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(non_upper_case_globals)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable `L_col` should have a snake case name
[INFO] [stderr]    --> src/main.rs:711:10
[INFO] [stderr]     |
[INFO] [stderr] 711 |     let mut L_col = Vec::<char>::new();
[INFO] [stderr]     |             ^^^^^ help: convert the identifier to snake case: `l_col`
[INFO] [stderr] 
[INFO] [stderr] warning: variable `F_col` should have a snake case name
[INFO] [stderr]    --> src/main.rs:712:10
[INFO] [stderr]     |
[INFO] [stderr] 712 |     let mut F_col = Vec::<char>::new();
[INFO] [stderr]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col`
[INFO] [stderr] 
[INFO] [stderr] warning: variable `F_col_compressed` should have a snake case name
[INFO] [stderr]    --> src/main.rs:752:10
[INFO] [stderr]     |
[INFO] [stderr] 752 |     let mut F_col_compressed = HashMap::<char, usize>::new();
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `f_col_compressed`
[INFO] [stderr] 
[INFO] [stderr] warning: `fmmap` (bin "fmmap" test) generated 31 warnings (run `cargo fix --bin "fmmap" --tests` to apply 13 suggestions)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.06s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: bindgen v0.53.2, nom v5.1.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/fmmap-2d0b6a462ada21e7)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test test_borrow ... ok
[INFO] [stderr] [E::hts_open_format] Failed to open file "yeet.sam" : Read-only file system
[INFO] [stdout] test test_fitting_alignment2 ... ok
[INFO] [stderr] [E::hts_open_format] Failed to open file "test123.sam" : Read-only file system
[INFO] [stdout] test test_write_sam2 ... ok
[INFO] [stdout] test test_write_sam ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- test_write_sam stdout ----
[INFO] [stdout] thread 'test_write_sam' panicked at src/main.rs:530:14:
[INFO] [stdout] Error opening file.
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x55cb255dd3e5 - std::backtrace_rs::backtrace::libunwind::trace::he49dc9a9e3164223
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/../../backtrace/src/backtrace/libunwind.rs:105:5
[INFO] [stdout]    1:     0x55cb255dd3e5 - std::backtrace_rs::backtrace::trace_unsynchronized::h3a3e77c68030aa6b
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stdout]    2:     0x55cb255dd3e5 - std::sys_common::backtrace::_print_fmt::h9479ad2f99afd5d4
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/sys_common/backtrace.rs:68:5
[INFO] [stdout]    3:     0x55cb255dd3e5 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::hfb01aa1fa3fb1821
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/sys_common/backtrace.rs:44:22
[INFO] [stdout]    4:     0x55cb25603c5b - core::fmt::rt::Argument::fmt::h125e56152abbc1c3
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/core/src/fmt/rt.rs:165:63
[INFO] [stdout]    5:     0x55cb25603c5b - core::fmt::write::hb0ab4ff05ccfe741
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/core/src/fmt/mod.rs:1169:21
[INFO] [stdout]    6:     0x55cb255daccf - std::io::Write::write_fmt::hea6336dbf2fa00b8
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/io/mod.rs:1835:15
[INFO] [stdout]    7:     0x55cb255dd1be - std::sys_common::backtrace::_print::h79ca548f3a2adf4b
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/sys_common/backtrace.rs:47:5
[INFO] [stdout]    8:     0x55cb255dd1be - std::sys_common::backtrace::print::h9aebf997b2fea2d3
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/sys_common/backtrace.rs:34:9
[INFO] [stdout]    9:     0x55cb255deb29 - std::panicking::default_hook::{{closure}}::h68a0954af2694526
[INFO] [stdout]   10:     0x55cb255de87c - std::panicking::default_hook::h5be50cc6849ffb00
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/panicking.rs:295:9
[INFO] [stdout]   11:     0x55cb2554474f - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hd874405dcbd1d3ed
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/alloc/src/boxed.rs:2036:9
[INFO] [stdout]   12:     0x55cb2554474f - test::test_main::{{closure}}::h4f26a9df34a84b94
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/test/src/lib.rs:137:21
[INFO] [stdout]   13:     0x55cb255df12b - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h00e96d9c62aa9a12
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/alloc/src/boxed.rs:2036:9
[INFO] [stdout]   14:     0x55cb255df12b - std::panicking::rust_panic_with_hook::h3c0df6036729334c
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/panicking.rs:799:13
[INFO] [stdout]   15:     0x55cb255deea4 - std::panicking::begin_panic_handler::{{closure}}::ha3a21e93c4cfd807
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/panicking.rs:664:13
[INFO] [stdout]   16:     0x55cb255dd8a9 - std::sys_common::backtrace::__rust_end_short_backtrace::h19508a8f8ae71dc9
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/sys_common/backtrace.rs:171:18
[INFO] [stdout]   17:     0x55cb255debd7 - rust_begin_unwind
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/panicking.rs:652:5
[INFO] [stdout]   18:     0x55cb25503df3 - core::panicking::panic_fmt::h2ba8af99174d83ea
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/core/src/panicking.rs:72:14
[INFO] [stdout]   19:     0x55cb25602abc - core::panicking::panic_display::h110e9bd60847ece7
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/core/src/panicking.rs:262:5
[INFO] [stdout]   20:     0x55cb25503dbc - core::option::expect_failed::h94b6c0b03bfd8698
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/core/src/option.rs:1994:5
[INFO] [stdout]   21:     0x55cb25507b69 - core::option::Option<T>::expect::h607892b63b5f8546
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/core/src/option.rs:895:21
[INFO] [stdout]   22:     0x55cb2550c13a - fmmap::test_write_sam::hbc372c30e40b572a
[INFO] [stdout]                                at /opt/rustwide/workdir/src/main.rs:519:27
[INFO] [stdout]   23:     0x55cb2550be17 - fmmap::test_write_sam::{{closure}}::h4dd13f0a17593917
[INFO] [stdout]                                at /opt/rustwide/workdir/src/main.rs:514:20
[INFO] [stdout]   24:     0x55cb25505dd6 - core::ops::function::FnOnce::call_once::h74831410d6cb2dd6
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x55cb2554906b - core::ops::function::FnOnce::call_once::h18c6bf92212b87a4
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   26:     0x55cb2554906b - test::__rust_begin_short_backtrace::hdcf0edcfa9080086
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/test/src/lib.rs:625:18
[INFO] [stdout]   27:     0x55cb25548731 - test::run_test_in_process::{{closure}}::heac2c4eb375d2d10
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/test/src/lib.rs:648:60
[INFO] [stdout]   28:     0x55cb25548731 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h0289bafc8a1cc004
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   29:     0x55cb25548731 - std::panicking::try::do_call::h5e158f1ad8a5f983
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/panicking.rs:559:40
[INFO] [stdout]   30:     0x55cb25548731 - std::panicking::try::hea3411d60321c4de
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/panicking.rs:523:19
[INFO] [stdout]   31:     0x55cb25548731 - std::panic::catch_unwind::hafb7bb18bc47bbc7
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/panic.rs:149:14
[INFO] [stdout]   32:     0x55cb25548731 - test::run_test_in_process::h74dd138dc7762d99
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/test/src/lib.rs:648:27
[INFO] [stdout]   33:     0x55cb25548731 - test::run_test::{{closure}}::h6b390822e63606cf
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/test/src/lib.rs:569:43
[INFO] [stdout]   34:     0x55cb25511104 - test::run_test::{{closure}}::h6e11dba8131d354b
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/test/src/lib.rs:599:41
[INFO] [stdout]   35:     0x55cb25511104 - std::sys_common::backtrace::__rust_begin_short_backtrace::ha71b3541b59bdbbb
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/sys_common/backtrace.rs:155:18
[INFO] [stdout]   36:     0x55cb25515bd2 - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hef92127c5ef9e53c
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/thread/mod.rs:542:17
[INFO] [stdout]   37:     0x55cb25515bd2 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h859c109f9d11c92b
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   38:     0x55cb25515bd2 - std::panicking::try::do_call::hbf534c458cd858f0
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/panicking.rs:559:40
[INFO] [stdout]   39:     0x55cb25515bd2 - std::panicking::try::h65c18365a7b9ad90
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/panicking.rs:523:19
[INFO] [stdout]   40:     0x55cb25515bd2 - std::panic::catch_unwind::h21b25d4c69478c39
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/panic.rs:149:14
[INFO] [stdout]   41:     0x55cb25515bd2 - std::thread::Builder::spawn_unchecked_::{{closure}}::h23335f620275a9bf
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/thread/mod.rs:541:30
[INFO] [stdout]   42:     0x55cb25515bd2 - core::ops::function::FnOnce::call_once{{vtable.shim}}::hb491dc55513e9b7c
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   43:     0x55cb255e338b - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h41b39260afcffdc9
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/alloc/src/boxed.rs:2022:9
[INFO] [stdout]   44:     0x55cb255e338b - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h6694c8dc6dd010c4
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/alloc/src/boxed.rs:2022:9
[INFO] [stdout]   45:     0x55cb255e338b - std::sys::pal::unix::thread::Thread::new::thread_start::hf16038e1c8e19c99
[INFO] [stdout]                                at /rustc/b642703cf9526da1e72c0b6755753b939a9c6b6d/library/std/src/sys/pal/unix/thread.rs:108:17
[INFO] [stdout]   46:     0x7f76ccd7aac3 - <unknown>
[INFO] [stdout]   47:     0x7f76cce0ba04 - __clone
[INFO] [stdout]   48:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     test_write_sam
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 3 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--bin fmmap`
[INFO] running `Command { std: "docker" "inspect" "14ea7f976265c2f64231fcaadb576c4d9fed8324eae0f85884f0203fd36a7b2a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "14ea7f976265c2f64231fcaadb576c4d9fed8324eae0f85884f0203fd36a7b2a", kill_on_drop: false }`
[INFO] [stdout] 14ea7f976265c2f64231fcaadb576c4d9fed8324eae0f85884f0203fd36a7b2a
