[INFO] fetching crate alignoth 0.12.0...
[INFO] testing alignoth-0.12.0 against master#1871252fc8bb672d40787e67404e6eaae7059369 for pr-125151
[INFO] extracting crate alignoth 0.12.0 into /workspace/builds/worker-4-tc1/source
[INFO] validating manifest of crates.io crate alignoth 0.12.0 on toolchain 1871252fc8bb672d40787e67404e6eaae7059369
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate alignoth 0.12.0
[INFO] finished tweaking crates.io crate alignoth 0.12.0
[INFO] tweaked toml for crates.io crate alignoth 0.12.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate crates.io crate alignoth 0.12.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 67f7d0a2602fde740091799672f9bf35201633acdb060dc2e33e60590dd418b7
[INFO] running `Command { std: "docker" "start" "-a" "67f7d0a2602fde740091799672f9bf35201633acdb060dc2e33e60590dd418b7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "67f7d0a2602fde740091799672f9bf35201633acdb060dc2e33e60590dd418b7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "67f7d0a2602fde740091799672f9bf35201633acdb060dc2e33e60590dd418b7", kill_on_drop: false }`
[INFO] [stdout] 67f7d0a2602fde740091799672f9bf35201633acdb060dc2e33e60590dd418b7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d56afe91e0fd518c5809c414bc28dc4b15133c373b5230036a33cec832a3e9b4
[INFO] running `Command { std: "docker" "start" "-a" "d56afe91e0fd518c5809c414bc28dc4b15133c373b5230036a33cec832a3e9b4", kill_on_drop: false }`
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[INFO] [stderr]    Compiling http-body v0.4.5
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[INFO] [stderr]    Compiling iana-time-zone v0.1.53
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[INFO] [stderr]    Compiling encoding_rs v0.8.31
[INFO] [stderr]    Compiling tower-service v0.3.2
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling serde_json v1.0.114
[INFO] [stderr]    Compiling anyhow v1.0.80
[INFO] [stderr]    Compiling httpdate v1.0.2
[INFO] [stderr]    Compiling unicode-segmentation v1.10.0
[INFO] [stderr]    Compiling either v1.8.0
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[INFO] [stderr]    Compiling hyper v0.14.23
[INFO] [stderr]    Compiling time-macros v0.2.6
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling heck v0.3.3
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[INFO] [stderr]    Compiling ignore v0.4.20
[INFO] [stderr]    Compiling pest_generator v2.5.6
[INFO] [stderr]    Compiling url v2.3.1
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[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling base64 v0.21.0
[INFO] [stderr]    Compiling num_threads v0.1.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
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[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling deunicode v0.4.3
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling slug v0.1.4
[INFO] [stderr]    Compiling rustls-pemfile v1.0.4
[INFO] [stderr]    Compiling time v0.3.17
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling petgraph v0.6.2
[INFO] [stderr]    Compiling unic-segment v0.9.0
[INFO] [stderr]    Compiling pest_derive v2.5.6
[INFO] [stderr]    Compiling globwalk v0.8.1
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling serde_urlencoded v0.7.1
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v3.4.0
[INFO] [stderr]    Compiling humansize v2.1.3
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ipnet v2.7.1
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling editdistancek v1.0.1
[INFO] [stderr]    Compiling bytecount v0.6.3
[INFO] [stderr]    Compiling sync_wrapper v0.1.2
[INFO] [stderr]    Compiling mime v0.3.16
[INFO] [stderr]    Compiling strum v0.24.1
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling tera v1.19.1
[INFO] [stderr]    Compiling simplelog v0.12.1
[INFO] [stderr]    Compiling structopt v0.3.26
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.5.0
[INFO] [stderr]    Compiling tokio-native-tls v0.3.0
[INFO] [stderr]    Compiling hyper-tls v0.5.0
[INFO] [stderr]    Compiling reqwest v0.11.24
[INFO] [stderr]    Compiling rust-htslib v0.46.0
[INFO] [stderr]    Compiling alignoth v0.12.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 23s
[INFO] running `Command { std: "docker" "inspect" "d56afe91e0fd518c5809c414bc28dc4b15133c373b5230036a33cec832a3e9b4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d56afe91e0fd518c5809c414bc28dc4b15133c373b5230036a33cec832a3e9b4", kill_on_drop: false }`
[INFO] [stdout] d56afe91e0fd518c5809c414bc28dc4b15133c373b5230036a33cec832a3e9b4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e3f1a16319729563b113d73fe8d0d45bfdfa84909b3207873721bfc3010b0052
[INFO] running `Command { std: "docker" "start" "-a" "e3f1a16319729563b113d73fe8d0d45bfdfa84909b3207873721bfc3010b0052", kill_on_drop: false }`
[INFO] [stderr]    Compiling alignoth v0.12.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 7.21s
[INFO] running `Command { std: "docker" "inspect" "e3f1a16319729563b113d73fe8d0d45bfdfa84909b3207873721bfc3010b0052", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e3f1a16319729563b113d73fe8d0d45bfdfa84909b3207873721bfc3010b0052", kill_on_drop: false }`
[INFO] [stdout] e3f1a16319729563b113d73fe8d0d45bfdfa84909b3207873721bfc3010b0052
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+1871252fc8bb672d40787e67404e6eaae7059369" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c61f36017051fb233b5e3164ae20e7a1b8876ee590b0dd621968c5e20541f081
[INFO] running `Command { std: "docker" "start" "-a" "c61f36017051fb233b5e3164ae20e7a1b8876ee590b0dd621968c5e20541f081", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.25s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/alignoth-b0cea7d4842c0598)
[INFO] [stdout] 
[INFO] [stdout] running 24 tests
[INFO] [stderr] [E::bam_aux_get] Corrupted aux data for read (null)
[INFO] [stdout] test cli::tests::test_region_length ... ok
[INFO] [stderr] [E::bam_aux_get] Corrupted aux data for read (null)
[INFO] [stdout] test plot::tests::test_aux_record_to_string ... ok
[INFO] [stdout] test plot::tests::test_aux_record ... ok
[INFO] [stdout] test cli::tests::test_region_from_around ... ok
[INFO] [stdout] test cli::tests::test_region_deserialization ... ok
[INFO] [stdout] test cli::tests::test_interval_deserialization ... ok
[INFO] [stdout] test plot::tests::test_matching_bases ... ok
[INFO] [stdout] test cli::tests::test_data_format_to_string ... ok
[INFO] [stdout] test plot::tests::test_fetch_reference ... ok
[INFO] [stdout] test cli::tests::test_data_format_deserialization ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_from_str ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_match ... ok
[INFO] [stdout] test plot::tests::test_empty_aux_record ... ok
[INFO] [stdout] test plot::tests::test_read_ordering_with_max_read_depth ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_deletion ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_insertion ... ok
[INFO] [stdout] test tests::test_write_files ... ok
[INFO] [stdout] test plot::tests::test_read_ordering ... ok
[INFO] [stdout] test cli::tests::test_around_deserialization ... ok
[INFO] [stdout] test utils::tests::test_get_fasta_length ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_string_serialization ... ok
[INFO] [stdout] test utils::tests::test_get_ref_and_bam_from_empty_cwd ... ok
[INFO] [stdout] test plot::tests::test_create_plot_data ... ok
[INFO] [stdout] test plot::tests::test_read_position_with_softclips ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 24 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.21s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c61f36017051fb233b5e3164ae20e7a1b8876ee590b0dd621968c5e20541f081", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c61f36017051fb233b5e3164ae20e7a1b8876ee590b0dd621968c5e20541f081", kill_on_drop: false }`
[INFO] [stdout] c61f36017051fb233b5e3164ae20e7a1b8876ee590b0dd621968c5e20541f081
[INFO] testing alignoth-0.12.0 against try#b642703cf9526da1e72c0b6755753b939a9c6b6d for pr-125151
[INFO] extracting crate alignoth 0.12.0 into /workspace/builds/worker-4-tc2/source
[INFO] validating manifest of crates.io crate alignoth 0.12.0 on toolchain b642703cf9526da1e72c0b6755753b939a9c6b6d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate alignoth 0.12.0
[INFO] finished tweaking crates.io crate alignoth 0.12.0
[INFO] tweaked toml for crates.io crate alignoth 0.12.0 written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate crates.io crate alignoth 0.12.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5443c6cbed390242fab67fb2711ed2551b25092b6f0194d3f2d6f1f4359f2b32
[INFO] running `Command { std: "docker" "start" "-a" "5443c6cbed390242fab67fb2711ed2551b25092b6f0194d3f2d6f1f4359f2b32", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5443c6cbed390242fab67fb2711ed2551b25092b6f0194d3f2d6f1f4359f2b32", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5443c6cbed390242fab67fb2711ed2551b25092b6f0194d3f2d6f1f4359f2b32", kill_on_drop: false }`
[INFO] [stdout] 5443c6cbed390242fab67fb2711ed2551b25092b6f0194d3f2d6f1f4359f2b32
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4404b4e46d85d5627ad3b02415849168d167081bd588346cb225217fd9b3f3f1
[INFO] running `Command { std: "docker" "start" "-a" "4404b4e46d85d5627ad3b02415849168d167081bd588346cb225217fd9b3f3f1", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.150
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.76
[INFO] [stderr]    Compiling unicode-ident v1.0.6
[INFO] [stderr]    Compiling syn v1.0.107
[INFO] [stderr]    Compiling pkg-config v0.3.26
[INFO] [stderr]    Compiling libm v0.2.6
[INFO] [stderr]    Compiling once_cell v1.17.0
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling itoa v1.0.5
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling serde v1.0.197
[INFO] [stderr]    Compiling log v0.4.20
[INFO] [stderr]    Compiling siphasher v0.3.10
[INFO] [stderr]    Compiling lock_api v0.4.9
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling parking_lot_core v0.9.6
[INFO] [stderr]    Compiling quote v1.0.35
[INFO] [stderr]    Compiling jobserver v0.1.25
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]    Compiling pin-project-lite v0.2.12
[INFO] [stderr]    Compiling cc v1.0.78
[INFO] [stderr]    Compiling syn v2.0.48
[INFO] [stderr]    Compiling thiserror v1.0.38
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling futures-core v0.3.25
[INFO] [stderr]    Compiling smallvec v1.10.0
[INFO] [stderr]    Compiling bytes v1.3.0
[INFO] [stderr]    Compiling getrandom v0.2.8
[INFO] [stderr]    Compiling openssl-src v111.24.0+1.1.1s
[INFO] [stderr]    Compiling cmake v0.1.49
[INFO] [stderr]    Compiling aho-corasick v0.7.20
[INFO] [stderr]    Compiling phf_shared v0.11.2
[INFO] [stderr]    Compiling indexmap v1.9.2
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling regex-syntax v0.6.28
[INFO] [stderr]    Compiling openssl-sys v0.9.80
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling parking_lot v0.12.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling socket2 v0.5.5
[INFO] [stderr]    Compiling signal-hook-registry v1.4.0
[INFO] [stderr]    Compiling libz-sys v1.1.15
[INFO] [stderr]    Compiling num_cpus v1.15.0
[INFO] [stderr]    Compiling mio v0.8.9
[INFO] [stderr]    Compiling futures-task v0.3.25
[INFO] [stderr]    Compiling hashbrown v0.12.3
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling regex v1.7.1
[INFO] [stderr]    Compiling phf_generator v0.11.2
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling slab v0.4.7
[INFO] [stderr]    Compiling tracing-core v0.1.30
[INFO] [stderr]    Compiling ryu v1.0.12
[INFO] [stderr]    Compiling serde_derive v1.0.197
[INFO] [stderr]    Compiling tokio-macros v2.2.0
[INFO] [stderr]    Compiling openssl v0.10.45
[INFO] [stderr]    Compiling bytemuck v1.13.0
[INFO] [stderr]    Compiling tinyvec_macros v0.1.0
[INFO] [stderr]    Compiling foreign-types-shared v0.1.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling futures-util v0.3.25
[INFO] [stderr]    Compiling paste v1.0.11
[INFO] [stderr]    Compiling percent-encoding v2.2.0
[INFO] [stderr]    Compiling rustversion v1.0.11
[INFO] [stderr]    Compiling tokio v1.36.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling foreign-types v0.3.2
[INFO] [stderr]    Compiling tinyvec v1.6.0
[INFO] [stderr]    Compiling safe_arch v0.6.0
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.38
[INFO] [stderr]    Compiling openssl-macros v0.1.0
[INFO] [stderr]    Compiling tracing v0.1.37
[INFO] [stderr]    Compiling phf_codegen v0.11.2
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.59+curl-7.86.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling phf v0.11.2
[INFO] [stderr]    Compiling http v0.2.8
[INFO] [stderr]    Compiling num-complex v0.4.3
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling ucd-trie v0.1.5
[INFO] [stderr]    Compiling typenum v1.16.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling native-tls v0.2.11
[INFO] [stderr]    Compiling futures-sink v0.3.25
[INFO] [stderr]    Compiling httparse v1.8.0
[INFO] [stderr]    Compiling futures-channel v0.3.25
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.2
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling pest v2.5.6
[INFO] [stderr]    Compiling chrono-tz-build v0.2.0
[INFO] [stderr]    Compiling unicode-normalization v0.1.22
[INFO] [stderr]    Compiling wide v0.7.5
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling tokio-util v0.7.4
[INFO] [stderr]    Compiling form_urlencoded v1.1.0
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[INFO] [stderr]    Compiling strum v0.24.1
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[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling bytecount v0.6.3
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[INFO] [stderr]    Compiling tera v1.19.1
[INFO] [stderr]    Compiling structopt v0.3.26
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.5.0
[INFO] [stderr]    Compiling tokio-native-tls v0.3.0
[INFO] [stderr]    Compiling hyper-tls v0.5.0
[INFO] [stderr]    Compiling reqwest v0.11.24
[INFO] [stderr]    Compiling rust-htslib v0.46.0
[INFO] [stderr]    Compiling alignoth v0.12.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 06s
[INFO] running `Command { std: "docker" "inspect" "4404b4e46d85d5627ad3b02415849168d167081bd588346cb225217fd9b3f3f1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4404b4e46d85d5627ad3b02415849168d167081bd588346cb225217fd9b3f3f1", kill_on_drop: false }`
[INFO] [stdout] 4404b4e46d85d5627ad3b02415849168d167081bd588346cb225217fd9b3f3f1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9a0eff19a3b2f40acc4f4f2ec19136617783ccf3418b647ad4aa061a7f8c0b79
[INFO] running `Command { std: "docker" "start" "-a" "9a0eff19a3b2f40acc4f4f2ec19136617783ccf3418b647ad4aa061a7f8c0b79", kill_on_drop: false }`
[INFO] [stderr]    Compiling alignoth v0.12.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 6.81s
[INFO] running `Command { std: "docker" "inspect" "9a0eff19a3b2f40acc4f4f2ec19136617783ccf3418b647ad4aa061a7f8c0b79", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9a0eff19a3b2f40acc4f4f2ec19136617783ccf3418b647ad4aa061a7f8c0b79", kill_on_drop: false }`
[INFO] [stdout] 9a0eff19a3b2f40acc4f4f2ec19136617783ccf3418b647ad4aa061a7f8c0b79
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+b642703cf9526da1e72c0b6755753b939a9c6b6d" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 0e07909488e79ef00dcb4052be7e419e1d31d4dca0e76ffde70a5b0b74a6a65d
[INFO] running `Command { std: "docker" "start" "-a" "0e07909488e79ef00dcb4052be7e419e1d31d4dca0e76ffde70a5b0b74a6a65d", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.25s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/alignoth-b0cea7d4842c0598)
[INFO] [stdout] 
[INFO] [stdout] running 24 tests
[INFO] [stderr] [E::bam_aux_get] Corrupted aux data for read (null)
[INFO] [stdout] test cli::tests::test_interval_deserialization ... ok
[INFO] [stdout] test cli::tests::test_data_format_to_string ... ok
[INFO] [stdout] test cli::tests::test_data_format_deserialization ... ok
[INFO] [stdout] test plot::tests::test_aux_record ... ok
[INFO] [stdout] test cli::tests::test_around_deserialization ... ok
[INFO] [stdout] test plot::tests::test_fetch_reference ... ok
[INFO] [stdout] test plot::tests::test_matching_bases ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_deletion ... ok
[INFO] [stderr] [E::bam_aux_get] Corrupted aux data for read (null)
[INFO] [stdout] test plot::tests::test_plot_cigar_from_str ... ok
[INFO] [stdout] test cli::tests::test_region_from_around ... ok
[INFO] [stdout] test cli::tests::test_region_length ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_match ... ok
[INFO] [stdout] test cli::tests::test_region_deserialization ... ok
[INFO] [stdout] test plot::tests::test_empty_aux_record ... ok
[INFO] [stdout] test plot::tests::test_aux_record_to_string ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_insertion ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_string_serialization ... ok
[INFO] [stdout] test plot::tests::test_read_ordering ... ok
[INFO] [stdout] test plot::tests::test_read_ordering_with_max_read_depth ... ok
[INFO] [stdout] test utils::tests::test_get_fasta_length ... ok
[INFO] [stdout] test tests::test_write_files ... ok
[INFO] [stdout] test plot::tests::test_create_plot_data ... ok
[INFO] [stdout] test utils::tests::test_get_ref_and_bam_from_empty_cwd ... ok
[INFO] [stdout] test plot::tests::test_read_position_with_softclips ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 24 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.23s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "0e07909488e79ef00dcb4052be7e419e1d31d4dca0e76ffde70a5b0b74a6a65d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0e07909488e79ef00dcb4052be7e419e1d31d4dca0e76ffde70a5b0b74a6a65d", kill_on_drop: false }`
[INFO] [stdout] 0e07909488e79ef00dcb4052be7e419e1d31d4dca0e76ffde70a5b0b74a6a65d
