[INFO] cloning repository https://github.com/mooreryan/bio_ballyhoo
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mooreryan/bio_ballyhoo" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4895a9c2f64f3443dbc032002a5d6a371a1062d0
[INFO] checking mooreryan/bio_ballyhoo/4895a9c2f64f3443dbc032002a5d6a371a1062d0 against master#ac385a5af6d9fa8399a0cec799833cd28324abf8 for pr-125107
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mooreryan/bio_ballyhoo on toolchain ac385a5af6d9fa8399a0cec799833cd28324abf8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ac385a5af6d9fa8399a0cec799833cd28324abf8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] finished tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] tweaked toml for git repo https://github.com/mooreryan/bio_ballyhoo written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/mooreryan/bio_ballyhoo already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ac385a5af6d9fa8399a0cec799833cd28324abf8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded enum-map-derive v0.4.6
[INFO] [stderr]   Downloaded getset v0.0.9
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded console v0.14.0
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded matrixmultiply v0.2.4
[INFO] [stderr]   Downloaded triple_accel v0.3.4
[INFO] [stderr]   Downloaded bio-types v0.10.0
[INFO] [stderr]   Downloaded bio v0.32.0
[INFO] [stderr]   Downloaded ndarray v0.13.1
[INFO] [stderr]   Downloaded statrs v0.12.0
[INFO] [stderr]   Downloaded array-macro v1.0.5
[INFO] [stderr]   Downloaded enum-map v0.6.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+ac385a5af6d9fa8399a0cec799833cd28324abf8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 11e823cff06dc14546a1e09defd4ff6c297c8ee554060543161445e1d1fae768
[INFO] running `Command { std: "docker" "start" "-a" "11e823cff06dc14546a1e09defd4ff6c297c8ee554060543161445e1d1fae768", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "11e823cff06dc14546a1e09defd4ff6c297c8ee554060543161445e1d1fae768", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "11e823cff06dc14546a1e09defd4ff6c297c8ee554060543161445e1d1fae768", kill_on_drop: false }`
[INFO] [stdout] 11e823cff06dc14546a1e09defd4ff6c297c8ee554060543161445e1d1fae768
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:59a85a07ab18ca8720692f8e61effa1c651d9e2ca591e072c2b212bb91a6b8b5" "/opt/rustwide/cargo-home/bin/cargo" "+ac385a5af6d9fa8399a0cec799833cd28324abf8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dc82ffb5b0523bc83e0e5db58030fa52310c0913ccb8d9d8ccb781c94a3532c7
[INFO] running `Command { std: "docker" "start" "-a" "dc82ffb5b0523bc83e0e5db58030fa52310c0913ccb8d9d8ccb781c94a3532c7", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.60
[INFO] [stderr]    Compiling libc v0.2.86
[INFO] [stderr]    Compiling serde_derive v1.0.123
[INFO] [stderr]    Compiling serde v1.0.123
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]     Checking ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking once_cell v1.5.2
[INFO] [stderr]     Checking byteorder v1.4.2
[INFO] [stderr]     Checking regex-syntax v0.6.22
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling indexmap v1.6.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking thread_local v1.1.3
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]     Checking array-macro v1.0.5
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking aho-corasick v0.7.15
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking itoa v0.4.7
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking triple_accel v0.3.4
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]    Compiling getrandom v0.2.2
[INFO] [stderr]     Checking maplit v1.0.2
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking terminal_size v0.1.16
[INFO] [stderr]     Checking rand_core v0.6.2
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand_chacha v0.3.0
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking rand v0.8.3
[INFO] [stderr]     Checking regex v1.4.3
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]     Checking console v0.14.0
[INFO] [stderr]     Checking indicatif v0.15.0
[INFO] [stderr]    Compiling structopt-derive v0.4.14
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]     Checking snafu v0.6.10
[INFO] [stderr]     Checking bio-types v0.10.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bstr v0.2.15
[INFO] [stderr]     Checking multimap v0.8.2
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking csv v1.1.5
[INFO] [stderr]     Checking structopt v0.3.21
[INFO] [stderr]     Checking make_reads v0.1.0 (/opt/rustwide/workdir/make_reads)
[INFO] [stderr]     Checking derep v0.1.0 (/opt/rustwide/workdir/derep)
[INFO] [stderr]     Checking msa_pairwise v0.2.0 (/opt/rustwide/workdir/msa_pairwise_identity)
[INFO] [stderr]     Checking simple_headers v0.1.0 (/opt/rustwide/workdir/simple_headers)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 10.28s
[INFO] running `Command { std: "docker" "inspect" "dc82ffb5b0523bc83e0e5db58030fa52310c0913ccb8d9d8ccb781c94a3532c7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dc82ffb5b0523bc83e0e5db58030fa52310c0913ccb8d9d8ccb781c94a3532c7", kill_on_drop: false }`
[INFO] [stdout] dc82ffb5b0523bc83e0e5db58030fa52310c0913ccb8d9d8ccb781c94a3532c7