[INFO] fetching crate libradicl 0.6.0...
[INFO] checking libradicl-0.6.0 against master#c2f2db79ca3024f68d22b45aa22b570775c2c4ad for pr-124157
[INFO] extracting crate libradicl 0.6.0 into /workspace/builds/worker-1-tc1/source
[INFO] validating manifest of crates.io crate libradicl 0.6.0 on toolchain c2f2db79ca3024f68d22b45aa22b570775c2c4ad
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2f2db79ca3024f68d22b45aa22b570775c2c4ad" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate libradicl 0.6.0
[INFO] finished tweaking crates.io crate libradicl 0.6.0
[INFO] tweaked toml for crates.io crate libradicl 0.6.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2f2db79ca3024f68d22b45aa22b570775c2c4ad" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 85 packages to latest compatible versions
[INFO] [stderr]       Adding derive-new v0.5.9 (latest: v0.6.0)
[INFO] [stderr]       Adding heck v0.4.1 (latest: v0.5.0)
[INFO] [stderr]       Adding quick-error v1.2.3 (latest: v2.0.1)
[INFO] [stderr]       Adding rust-htslib v0.44.1 (latest: v0.46.0)
[INFO] [stderr]       Adding rustc_version v0.1.7 (latest: v0.4.0)
[INFO] [stderr]       Adding scroll v0.11.0 (latest: v0.12.0)
[INFO] [stderr]       Adding semver v0.1.20 (latest: v1.0.22)
[INFO] [stderr]       Adding strum_macros v0.25.3 (latest: v0.26.2)
[INFO] [stderr]       Adding syn v1.0.109 (latest: v2.0.60)
[INFO] [stderr]       Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.0+wasi-0.2.0)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c2f2db79ca3024f68d22b45aa22b570775c2c4ad" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded hts-sys v2.1.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:99613afd962a8cfa530ec1899472a458bd015a1ab0af876cf7eb06f6006d81ea" "/opt/rustwide/cargo-home/bin/cargo" "+c2f2db79ca3024f68d22b45aa22b570775c2c4ad" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 493cd8f9800dcf2c9108744d958c87d21f479a41350b86daa612d35d4c125ca7
[INFO] running `Command { std: "docker" "start" "-a" "493cd8f9800dcf2c9108744d958c87d21f479a41350b86daa612d35d4c125ca7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "493cd8f9800dcf2c9108744d958c87d21f479a41350b86daa612d35d4c125ca7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "493cd8f9800dcf2c9108744d958c87d21f479a41350b86daa612d35d4c125ca7", kill_on_drop: false }`
[INFO] [stdout] 493cd8f9800dcf2c9108744d958c87d21f479a41350b86daa612d35d4c125ca7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:99613afd962a8cfa530ec1899472a458bd015a1ab0af876cf7eb06f6006d81ea" "/opt/rustwide/cargo-home/bin/cargo" "+c2f2db79ca3024f68d22b45aa22b570775c2c4ad" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4ad17526ceb91dab9e55250563e04e1e5e33e2b389b9e559d2e510695552f75a
[INFO] running `Command { std: "docker" "start" "-a" "4ad17526ceb91dab9e55250563e04e1e5e33e2b389b9e559d2e510695552f75a", kill_on_drop: false }`
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustversion v1.0.15
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling libc v0.2.154
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling num-bigint v0.4.4
[INFO] [stderr]    Compiling lock_api v0.4.12
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling parking_lot_core v0.9.10
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling syn v2.0.60
[INFO] [stderr]    Compiling serde v1.0.200
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking scopeguard v1.2.0
[INFO] [stderr]     Checking zerocopy v0.7.32
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking scroll v0.11.0
[INFO] [stderr]    Compiling jobserver v0.1.31
[INFO] [stderr]    Compiling cc v1.0.96
[INFO] [stderr]     Checking dashmap v5.5.3
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]     Checking num-iter v0.1.44
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]    Compiling libz-sys v1.1.16
[INFO] [stderr]    Compiling thiserror-impl v1.0.59
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling serde_derive v1.0.200
[INFO] [stderr]     Checking num v0.4.2
[INFO] [stderr]     Checking thiserror v1.0.59
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]     Checking libradicl v0.6.0 (/opt/rustwide/workdir)
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `needletail`
[INFO] [stdout]    --> src/lib.rs:711:17
[INFO] [stdout]     |
[INFO] [stdout] 711 |                 needletail::bitkmer::BitNuclKmer::new(&b[..], b.len() as u8, false).next()
[INFO] [stdout]     |                 ^^^^^^^^^^ use of undeclared crate or module `needletail`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `needletail`
[INFO] [stdout]    --> src/lib.rs:719:17
[INFO] [stdout]     |
[INFO] [stdout] 719 |                 needletail::bitkmer::BitNuclKmer::new(&b[..], b.len() as u8, false).next()
[INFO] [stdout]     |                 ^^^^^^^^^^ use of undeclared crate or module `needletail`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `needletail`
[INFO] [stdout]    --> src/lib.rs:730:13
[INFO] [stdout]     |
[INFO] [stdout] 730 |             needletail::bitkmer::BitNuclKmer::new(&x[..], x.len() as u8, false).next()
[INFO] [stdout]     |             ^^^^^^^^^^ use of undeclared crate or module `needletail`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `needletail`
[INFO] [stdout]    --> src/lib.rs:736:13
[INFO] [stdout]     |
[INFO] [stdout] 736 |             needletail::bitkmer::BitNuclKmer::new(&x[..], x.len() as u8, false).next()
[INFO] [stdout]     |             ^^^^^^^^^^ use of undeclared crate or module `needletail`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 4 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `libradicl` (lib test) due to 5 previous errors
[INFO] running `Command { std: "docker" "inspect" "4ad17526ceb91dab9e55250563e04e1e5e33e2b389b9e559d2e510695552f75a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4ad17526ceb91dab9e55250563e04e1e5e33e2b389b9e559d2e510695552f75a", kill_on_drop: false }`
[INFO] [stdout] 4ad17526ceb91dab9e55250563e04e1e5e33e2b389b9e559d2e510695552f75a
