[INFO] fetching crate edip 0.1.1...
[INFO] checking edip-0.1.1 against master#b3bd7058c139e71bae0862ef8f8ac936208873e9 for pr-123752
[INFO] extracting crate edip 0.1.1 into /workspace/builds/worker-4-tc1/source
[INFO] validating manifest of crates.io crate edip 0.1.1 on toolchain b3bd7058c139e71bae0862ef8f8ac936208873e9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b3bd7058c139e71bae0862ef8f8ac936208873e9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate edip 0.1.1
[INFO] finished tweaking crates.io crate edip 0.1.1
[INFO] tweaked toml for crates.io crate edip 0.1.1 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b3bd7058c139e71bae0862ef8f8ac936208873e9" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 229 packages
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[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b3bd7058c139e71bae0862ef8f8ac936208873e9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+b3bd7058c139e71bae0862ef8f8ac936208873e9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 803e2c59a8e9373b77191dcb8a962def397b4d332443a51ef877319f8dbd8160
[INFO] running `Command { std: "docker" "start" "-a" "803e2c59a8e9373b77191dcb8a962def397b4d332443a51ef877319f8dbd8160", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "803e2c59a8e9373b77191dcb8a962def397b4d332443a51ef877319f8dbd8160", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "803e2c59a8e9373b77191dcb8a962def397b4d332443a51ef877319f8dbd8160", kill_on_drop: false }`
[INFO] [stdout] 803e2c59a8e9373b77191dcb8a962def397b4d332443a51ef877319f8dbd8160
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+b3bd7058c139e71bae0862ef8f8ac936208873e9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2fee057b21c3a977f88af95e3c59e7d1b4e3b9e45e96edebbc53ea99e12ab94a
[INFO] running `Command { std: "docker" "start" "-a" "2fee057b21c3a977f88af95e3c59e7d1b4e3b9e45e96edebbc53ea99e12ab94a", kill_on_drop: false }`
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[INFO] [stderr]     Checking gchemol-lattice v0.1.2
[INFO] [stderr]     Checking octree v0.1.0
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[INFO] [stderr]     Checking edip v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking gchemol-neighbors v0.1.3
[INFO] [stderr]     Checking gchemol-core v0.1.0
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[INFO] [stdout] error[E0599]: no function or associated item named `from_file` found for struct `Molecule` in the current scope
[INFO] [stdout]    --> benches/silicon.rs:13:25
[INFO] [stdout]     |
[INFO] [stdout] 13  |     let mol = Molecule::from_file(f)?;
[INFO] [stdout]     |                         ^^^^^^^^^ function or associated item not found in `Molecule`
[INFO] [stdout]     |
[INFO] [stdout] note: if you're trying to build a new `Molecule` consider using one of the following associated functions:
[INFO] [stdout]       gchemol_core::data::<impl Molecule>::from_database
[INFO] [stdout]       Molecule::new
[INFO] [stdout]       Molecule::from_atoms
[INFO] [stdout]       Molecule::from_graph
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/gchemol-core-0.0.43/src/data.rs:260:5
[INFO] [stdout]     |
[INFO] [stdout] 260 |       pub fn from_database(name: &str) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]    ::: /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/gchemol-core-0.0.43/src/molecule.rs:80:5
[INFO] [stdout]     |
[INFO] [stdout] 80  |       pub fn new(name: &str) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 89  | /     pub fn from_atoms<T>(atoms: T) -> Self
[INFO] [stdout] 90  | |     where
[INFO] [stdout] 91  | |         T: IntoIterator,
[INFO] [stdout] 92  | |         T::Item: Into<Atom>,
[INFO] [stdout]     | |____________________________^
[INFO] [stdout] ...
[INFO] [stdout] 103 |       pub fn from_graph(graph: MolGraph) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude`
[INFO] [stdout]  --> benches/silicon.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use gchemol::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error; 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `edip` (bench "silicon") due to 2 previous errors; 1 warning emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] error[E0599]: no function or associated item named `from_file` found for struct `Molecule` in the current scope
[INFO] [stdout]    --> src/edip.rs:424:25
[INFO] [stdout]     |
[INFO] [stdout] 424 |     let mol = Molecule::from_file(f)?;
[INFO] [stdout]     |                         ^^^^^^^^^ function or associated item not found in `Molecule`
[INFO] [stdout]     |
[INFO] [stdout] note: if you're trying to build a new `Molecule` consider using one of the following associated functions:
[INFO] [stdout]       gchemol_core::data::<impl Molecule>::from_database
[INFO] [stdout]       Molecule::new
[INFO] [stdout]       Molecule::from_atoms
[INFO] [stdout]       Molecule::from_graph
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/gchemol-core-0.0.43/src/data.rs:260:5
[INFO] [stdout]     |
[INFO] [stdout] 260 |       pub fn from_database(name: &str) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]    ::: /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/gchemol-core-0.0.43/src/molecule.rs:80:5
[INFO] [stdout]     |
[INFO] [stdout] 80  |       pub fn new(name: &str) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 89  | /     pub fn from_atoms<T>(atoms: T) -> Self
[INFO] [stdout] 90  | |     where
[INFO] [stdout] 91  | |         T: IntoIterator,
[INFO] [stdout] 92  | |         T::Item: Into<Atom>,
[INFO] [stdout]     | |____________________________^
[INFO] [stdout] ...
[INFO] [stdout] 103 |       pub fn from_graph(graph: MolGraph) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude`
[INFO] [stdout]    --> src/edip.rs:419:9
[INFO] [stdout]     |
[INFO] [stdout] 419 |     use gchemol::prelude::*;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error; 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `edip` (lib test) due to 2 previous errors; 1 warning emitted
[INFO] running `Command { std: "docker" "inspect" "2fee057b21c3a977f88af95e3c59e7d1b4e3b9e45e96edebbc53ea99e12ab94a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2fee057b21c3a977f88af95e3c59e7d1b4e3b9e45e96edebbc53ea99e12ab94a", kill_on_drop: false }`
[INFO] [stdout] 2fee057b21c3a977f88af95e3c59e7d1b4e3b9e45e96edebbc53ea99e12ab94a
[INFO] checking edip-0.1.1 against try#57fe1b734d9ff1c8a92bda60b85506b9648158d3 for pr-123752
[INFO] extracting crate edip 0.1.1 into /workspace/builds/worker-4-tc2/source
[INFO] validating manifest of crates.io crate edip 0.1.1 on toolchain 57fe1b734d9ff1c8a92bda60b85506b9648158d3
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+57fe1b734d9ff1c8a92bda60b85506b9648158d3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate edip 0.1.1
[INFO] finished tweaking crates.io crate edip 0.1.1
[INFO] tweaked toml for crates.io crate edip 0.1.1 written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+57fe1b734d9ff1c8a92bda60b85506b9648158d3" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 229 packages
[INFO] [stderr]       Adding base64 v0.20.0 (latest: v0.22.0)
[INFO] [stderr]       Adding bitflags v1.3.2 (latest: v2.5.0)
[INFO] [stderr]       Adding chrono-tz v0.8.6 (latest: v0.9.0)
[INFO] [stderr]       Adding chrono-tz-build v0.2.1 (latest: v0.3.0)
[INFO] [stderr]       Adding clap v2.34.0 (latest: v4.5.4)
[INFO] [stderr]       Adding clap v3.2.25 (latest: v4.5.4)
[INFO] [stderr]       Adding clap_derive v3.2.25 (latest: v4.5.4)
[INFO] [stderr]       Adding clap_lex v0.2.4 (latest: v0.7.0)
[INFO] [stderr]       Adding criterion v0.3.6 (latest: v0.5.1)
[INFO] [stderr]       Adding criterion-plot v0.4.5 (latest: v0.5.0)
[INFO] [stderr]       Adding env_logger v0.9.3 (latest: v0.11.3)
[INFO] [stderr]       Adding env_logger v0.10.2 (latest: v0.11.3)
[INFO] [stderr]       Adding fixedbitset v0.4.2 (latest: v0.5.6)
[INFO] [stderr]       Adding gchemol v0.0.42 (latest: v0.1.7)
[INFO] [stderr]       Adding gchemol-core v0.0.43 (latest: v0.1.7)
[INFO] [stderr]       Adding gchemol-core v0.1.0 (latest: v0.1.7)
[INFO] [stderr]       Adding gchemol-geometry v0.0.41 (latest: v0.1.1)
[INFO] [stderr]       Adding gchemol-gut v0.2.0 (latest: v0.4.4)
[INFO] [stderr]       Adding gchemol-gut v0.3.1 (latest: v0.4.4)
[INFO] [stderr]       Adding gchemol-parser v0.3.2 (latest: v0.5.1)
[INFO] [stderr]       Adding gchemol-readwrite v0.0.43 (latest: v0.1.11)
[INFO] [stderr]       Adding generic-array v0.14.7 (latest: v1.0.0)
[INFO] [stderr]       Adding globwalk v0.8.1 (latest: v0.9.1)
[INFO] [stderr]       Adding grep v0.2.13 (latest: v0.3.1)
[INFO] [stderr]       Adding grep-printer v0.1.7 (latest: v0.2.1)
[INFO] [stderr]       Adding half v1.8.3 (latest: v2.4.1)
[INFO] [stderr]       Adding handlebars v4.0.1 (latest: v5.1.2)
[INFO] [stderr]       Adding hashbrown v0.12.3 (latest: v0.14.3)
[INFO] [stderr]       Adding heck v0.4.1 (latest: v0.5.0)
[INFO] [stderr]       Adding hermit-abi v0.1.19 (latest: v0.3.9)
[INFO] [stderr]       Adding indexmap v1.9.3 (latest: v2.2.6)
[INFO] [stderr]       Adding itertools v0.10.5 (latest: v0.12.1)
[INFO] [stderr]       Adding linux-raw-sys v0.4.13 (latest: v0.6.4)
[INFO] [stderr]       Adding nalgebra v0.31.4 (latest: v0.32.5)
[INFO] [stderr]       Adding nalgebra-macros v0.1.0 (latest: v0.2.1)
[INFO] [stderr]       Adding ordered-float v3.9.2 (latest: v4.2.0)
[INFO] [stderr]       Adding os_str_bytes v6.6.1 (latest: v7.0.0)
[INFO] [stderr]       Adding simba v0.7.3 (latest: v0.8.1)
[INFO] [stderr]       Adding siphasher v0.3.11 (latest: v1.0.1)
[INFO] [stderr]       Adding strsim v0.10.0 (latest: v0.11.1)
[INFO] [stderr]       Adding syn v1.0.109 (latest: v2.0.58)
[INFO] [stderr]       Adding textwrap v0.11.0 (latest: v0.16.1)
[INFO] [stderr]       Adding toml v0.5.11 (latest: v0.8.12)
[INFO] [stderr]       Adding toml v0.7.8 (latest: v0.8.12)
[INFO] [stderr]       Adding toml_edit v0.19.15 (latest: v0.22.9)
[INFO] [stderr]       Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.0+wasi-0.2.0)
[INFO] [stderr]       Adding windows-core v0.52.0 (latest: v0.55.0)
[INFO] [stderr]       Adding winnow v0.5.40 (latest: v0.6.5)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+57fe1b734d9ff1c8a92bda60b85506b9648158d3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+57fe1b734d9ff1c8a92bda60b85506b9648158d3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ed6ca9a9f978321957e617a805ae6e70275018eaa028fc7aa6eb2ff2dd31a920
[INFO] running `Command { std: "docker" "start" "-a" "ed6ca9a9f978321957e617a805ae6e70275018eaa028fc7aa6eb2ff2dd31a920", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ed6ca9a9f978321957e617a805ae6e70275018eaa028fc7aa6eb2ff2dd31a920", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ed6ca9a9f978321957e617a805ae6e70275018eaa028fc7aa6eb2ff2dd31a920", kill_on_drop: false }`
[INFO] [stdout] ed6ca9a9f978321957e617a805ae6e70275018eaa028fc7aa6eb2ff2dd31a920
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+57fe1b734d9ff1c8a92bda60b85506b9648158d3" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7ce7ec15905bc30e38577b54746afd3754d1dee37ae8c92aa69aaf580e3468a8
[INFO] running `Command { std: "docker" "start" "-a" "7ce7ec15905bc30e38577b54746afd3754d1dee37ae8c92aa69aaf580e3468a8", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling serde v1.0.197
[INFO] [stderr]    Compiling autocfg v1.2.0
[INFO] [stderr]     Checking memchr v2.7.2
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[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]     Checking log v0.4.21
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]     Checking itoa v1.0.11
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[INFO] [stderr]    Compiling serde_json v1.0.115
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking termcolor v1.4.1
[INFO] [stderr]     Checking either v1.10.0
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]     Checking getrandom v0.2.14
[INFO] [stderr]    Compiling proc-macro2 v1.0.79
[INFO] [stderr]     Checking ppv-lite86 v0.2.17
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[INFO] [stderr]    Compiling version_check v0.9.4
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[INFO] [stderr]    Compiling num-rational v0.4.1
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[INFO] [stderr]     Checking os_pipe v1.1.5
[INFO] [stderr]    Compiling quote v1.0.36
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[INFO] [stderr]     Checking shared_child v1.0.0
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[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]     Checking equivalent v1.0.1
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[INFO] [stderr]     Checking duct v0.13.7
[INFO] [stderr]    Compiling syn v2.0.58
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
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[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling thiserror v1.0.58
[INFO] [stderr]     Checking wide v0.7.15
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[INFO] [stderr]     Checking rawpointer v0.2.1
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[INFO] [stderr]     Checking anstyle-parse v0.2.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
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[INFO] [stderr]    Compiling siphasher v0.3.11
[INFO] [stderr]     Checking indexmap v2.2.6
[INFO] [stderr]     Checking anstyle-query v1.0.2
[INFO] [stderr]    Compiling phf_shared v0.11.2
[INFO] [stderr]     Checking anstream v0.6.13
[INFO] [stderr]     Checking atty v0.2.14
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[INFO] [stderr]    Compiling rand_core v0.6.4
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[INFO] [stderr]     Checking clap_lex v0.7.0
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]     Checking clap_builder v4.5.2
[INFO] [stderr]     Checking is-terminal v0.4.12
[INFO] [stderr]     Checking os_str_bytes v6.6.1
[INFO] [stderr]     Checking textwrap v0.16.1
[INFO] [stderr]    Compiling phf v0.11.2
[INFO] [stderr]     Checking grep-matcher v0.1.7
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking regex-automata v0.4.6
[INFO] [stderr]     Checking encoding_rs v0.8.34
[INFO] [stderr]     Checking same-file v1.0.6
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[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking unic-char-range v0.9.0
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[INFO] [stderr]    Compiling phf_generator v0.11.2
[INFO] [stderr]     Checking unic-common v0.9.0
[INFO] [stderr]    Compiling phf_codegen v0.11.2
[INFO] [stderr]     Checking unic-ucd-version v0.9.0
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[INFO] [stderr]     Checking base64 v0.20.0
[INFO] [stderr]     Checking iana-time-zone v0.1.60
[INFO] [stderr]     Checking unic-ucd-segment v0.9.0
[INFO] [stderr]     Checking deunicode v1.4.3
[INFO] [stderr]     Checking chrono v0.4.37
[INFO] [stderr]     Checking tempfile v3.10.1
[INFO] [stderr]     Checking smallvec v1.13.2
[INFO] [stderr]     Checking str_indices v0.4.3
[INFO] [stderr]     Checking minimal-lexical v0.2.1
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[INFO] [stderr]     Checking percent-encoding v2.3.1
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[INFO] [stderr]     Checking ropey v1.6.1
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[INFO] [stderr]     Checking unic-segment v0.9.0
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[INFO] [stderr]     Checking nom v7.1.3
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[INFO] [stderr]     Checking half v1.8.3
[INFO] [stderr]     Checking plotters-svg v0.3.5
[INFO] [stderr]     Checking cast v0.3.0
[INFO] [stderr]     Checking clap v2.34.0
[INFO] [stderr]     Checking plotters v0.3.5
[INFO] [stderr]     Checking criterion-plot v0.4.5
[INFO] [stderr]     Checking oorandom v11.1.3
[INFO] [stderr]     Checking encoding_rs_io v0.1.7
[INFO] [stderr]    Compiling serde_derive v1.0.197
[INFO] [stderr]    Compiling thiserror-impl v1.0.58
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling clap_derive v3.2.25
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]     Checking bstr v1.9.1
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.0
[INFO] [stderr]     Checking env_logger v0.10.2
[INFO] [stderr]     Checking env_logger v0.9.3
[INFO] [stderr]    Compiling pest v2.7.9
[INFO] [stderr]    Compiling chrono-tz-build v0.2.1
[INFO] [stderr]     Checking globset v0.4.14
[INFO] [stderr]     Checking grep-searcher v0.1.13
[INFO] [stderr]     Checking grep-regex v0.1.12
[INFO] [stderr]     Checking ignore v0.4.22
[INFO] [stderr]     Checking grep-cli v0.1.10
[INFO] [stderr]    Compiling chrono-tz v0.8.6
[INFO] [stderr]     Checking clap v4.5.4
[INFO] [stderr]     Checking globwalk v0.8.1
[INFO] [stderr]     Checking clap v3.2.25
[INFO] [stderr]    Compiling pest_meta v2.7.9
[INFO] [stderr]    Compiling pest_generator v2.7.9
[INFO] [stderr]    Compiling pest_derive v2.7.9
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]     Checking serde_spanned v0.6.5
[INFO] [stderr]     Checking toml_datetime v0.6.5
[INFO] [stderr]     Checking toml v0.5.11
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking bimap v0.6.3
[INFO] [stderr]     Checking envy v0.4.2
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking serde_cbor v0.11.2
[INFO] [stderr]     Checking toml_edit v0.19.15
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking simba v0.7.3
[INFO] [stderr]     Checking grep-printer v0.1.7
[INFO] [stderr]     Checking handlebars v4.0.1
[INFO] [stderr]     Checking tinytemplate v1.2.1
[INFO] [stderr]     Checking gchemol-gut v0.2.0
[INFO] [stderr]     Checking gchemol-gut v0.3.1
[INFO] [stderr]     Checking criterion v0.3.6
[INFO] [stderr]     Checking grep v0.2.13
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking tera v1.19.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking toml v0.7.8
[INFO] [stderr]     Checking gchemol-gut v0.4.4
[INFO] [stderr]     Checking gchemol-graph v0.1.6
[INFO] [stderr]     Checking gchemol-parser v0.3.2
[INFO] [stderr]     Checking nalgebra v0.31.4
[INFO] [stderr]     Checking vecfx v0.1.6
[INFO] [stderr]     Checking octree v0.1.0
[INFO] [stderr]     Checking gchemol-lattice v0.1.2
[INFO] [stderr]     Checking gchemol-geometry v0.0.41
[INFO] [stderr]     Checking edip v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking gchemol-neighbors v0.1.3
[INFO] [stderr]     Checking gchemol-core v0.1.0
[INFO] [stderr]     Checking gchemol-core v0.0.43
[INFO] [stderr]     Checking gchemol-readwrite v0.0.43
[INFO] [stderr]     Checking gchemol v0.0.42
[INFO] [stdout] error[E0599]: no function or associated item named `from_file` found for struct `Molecule` in the current scope
[INFO] [stdout]    --> benches/silicon.rs:13:25
[INFO] [stdout]     |
[INFO] [stdout] 13  |     let mol = Molecule::from_file(f)?;
[INFO] [stdout]     |                         ^^^^^^^^^ function or associated item not found in `Molecule`
[INFO] [stdout]     |
[INFO] [stdout] note: if you're trying to build a new `Molecule` consider using one of the following associated functions:
[INFO] [stdout]       gchemol_core::data::<impl Molecule>::from_database
[INFO] [stdout]       Molecule::new
[INFO] [stdout]       Molecule::from_atoms
[INFO] [stdout]       Molecule::from_graph
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/gchemol-core-0.0.43/src/data.rs:260:5
[INFO] [stdout]     |
[INFO] [stdout] 260 |       pub fn from_database(name: &str) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]    ::: /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/gchemol-core-0.0.43/src/molecule.rs:80:5
[INFO] [stdout]     |
[INFO] [stdout] 80  |       pub fn new(name: &str) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 89  | /     pub fn from_atoms<T>(atoms: T) -> Self
[INFO] [stdout] 90  | |     where
[INFO] [stdout] 91  | |         T: IntoIterator,
[INFO] [stdout] 92  | |         T::Item: Into<Atom>,
[INFO] [stdout]     | |____________________________^
[INFO] [stdout] ...
[INFO] [stdout] 103 |       pub fn from_graph(graph: MolGraph) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude`
[INFO] [stdout]  --> benches/silicon.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use gchemol::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error; 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `edip` (bench "silicon") due to 2 previous errors; 1 warning emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] error[E0599]: no function or associated item named `from_file` found for struct `Molecule` in the current scope
[INFO] [stdout]    --> src/edip.rs:424:25
[INFO] [stdout]     |
[INFO] [stdout] 424 |     let mol = Molecule::from_file(f)?;
[INFO] [stdout]     |                         ^^^^^^^^^ function or associated item not found in `Molecule`
[INFO] [stdout]     |
[INFO] [stdout] note: if you're trying to build a new `Molecule` consider using one of the following associated functions:
[INFO] [stdout]       gchemol_core::data::<impl Molecule>::from_database
[INFO] [stdout]       Molecule::new
[INFO] [stdout]       Molecule::from_atoms
[INFO] [stdout]       Molecule::from_graph
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/gchemol-core-0.0.43/src/data.rs:260:5
[INFO] [stdout]     |
[INFO] [stdout] 260 |       pub fn from_database(name: &str) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]    ::: /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/gchemol-core-0.0.43/src/molecule.rs:80:5
[INFO] [stdout]     |
[INFO] [stdout] 80  |       pub fn new(name: &str) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 89  | /     pub fn from_atoms<T>(atoms: T) -> Self
[INFO] [stdout] 90  | |     where
[INFO] [stdout] 91  | |         T: IntoIterator,
[INFO] [stdout] 92  | |         T::Item: Into<Atom>,
[INFO] [stdout]     | |____________________________^
[INFO] [stdout] ...
[INFO] [stdout] 103 |       pub fn from_graph(graph: MolGraph) -> Self {
[INFO] [stdout]     |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude`
[INFO] [stdout]    --> src/edip.rs:419:9
[INFO] [stdout]     |
[INFO] [stdout] 419 |     use gchemol::prelude::*;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error; 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `edip` (lib test) due to 2 previous errors; 1 warning emitted
[INFO] running `Command { std: "docker" "inspect" "7ce7ec15905bc30e38577b54746afd3754d1dee37ae8c92aa69aaf580e3468a8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7ce7ec15905bc30e38577b54746afd3754d1dee37ae8c92aa69aaf580e3468a8", kill_on_drop: false }`
[INFO] [stdout] 7ce7ec15905bc30e38577b54746afd3754d1dee37ae8c92aa69aaf580e3468a8
