[INFO] cloning repository https://github.com/nielsdos/FGS.rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/nielsdos/FGS.rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnielsdos%2FFGS.rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnielsdos%2FFGS.rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f00dfd927c76d63db1b32e9638807252b3bb975d
[INFO] checking nielsdos/FGS.rs against master#af4a5a13a15fa0c60e06321077ef452f769b42fd for pr-122960-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnielsdos%2FFGS.rs" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/nielsdos/FGS.rs on toolchain af4a5a13a15fa0c60e06321077ef452f769b42fd
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/nielsdos/FGS.rs
[INFO] finished tweaking git repo https://github.com/nielsdos/FGS.rs
[INFO] tweaked toml for git repo https://github.com/nielsdos/FGS.rs written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/nielsdos/FGS.rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded serde_derive v1.0.111
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[INFO] [stderr]   Downloaded ordermap v0.3.5
[INFO] [stderr]   Downloaded serde v1.0.111
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[INFO] [stderr]   Downloaded ndarray v0.13.1
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[INFO] [stderr]   Downloaded csv v1.1.3
[INFO] [stderr]   Downloaded bio v0.30.1
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[INFO] [stderr]   Downloaded snafu-derive v0.6.8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ff7b02151ff2f653186411b57040ac8227c9b335c3fee757b5c99c12be257eb1
[INFO] running `Command { std: "docker" "start" "-a" "ff7b02151ff2f653186411b57040ac8227c9b335c3fee757b5c99c12be257eb1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ff7b02151ff2f653186411b57040ac8227c9b335c3fee757b5c99c12be257eb1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ff7b02151ff2f653186411b57040ac8227c9b335c3fee757b5c99c12be257eb1", kill_on_drop: false }`
[INFO] [stdout] ff7b02151ff2f653186411b57040ac8227c9b335c3fee757b5c99c12be257eb1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fc18758eb9c66d91c04f593be66163712142900b59b6adb7bd1af7fd2d0629c9
[INFO] running `Command { std: "docker" "start" "-a" "fc18758eb9c66d91c04f593be66163712142900b59b6adb7bd1af7fd2d0629c9", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.31
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling serde v1.0.111
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling memchr v2.3.3
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[INFO] [stderr]    Compiling memoffset v0.5.4
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking ppv-lite86 v0.2.8
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
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[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]     Checking either v1.5.3
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[INFO] [stderr]     Checking rawpointer v0.2.1
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[INFO] [stderr]    Compiling rayon-core v1.7.0
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking aho-corasick v0.7.10
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[INFO] [stderr]     Checking itoa v0.4.5
[INFO] [stderr]    Compiling bio v0.30.1
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]     Checking bit-vec v0.6.2
[INFO] [stderr]     Checking regex-automata v0.1.9
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[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking crossbeam-queue v0.2.3
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking rayon v1.3.0
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.111
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.2
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling proc-macro-error v1.0.2
[INFO] [stderr]    Compiling structopt-derive v0.4.7
[INFO] [stderr]     Checking snafu v0.6.8
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bstr v0.2.13
[INFO] [stderr]     Checking bio-types v0.6.0
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking clap v2.33.1
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking structopt v0.3.14
[INFO] [stderr]     Checking compbio v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: the item `Iterator` is imported redundantly
[INFO] [stdout]  --> src/hmm.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::iter::Iterator;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]  --> /rustc/af4a5a13a15fa0c60e06321077ef452f769b42fd/library/std/src/prelude/mod.rs:134:13
[INFO] [stdout]   |
[INFO] [stdout]   = note: the item `Iterator` is already defined here
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `Default` is imported redundantly
[INFO] [stdout]  --> src/train.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::default::Default;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]  --> /rustc/af4a5a13a15fa0c60e06321077ef452f769b42fd/library/std/src/prelude/mod.rs:134:13
[INFO] [stdout]   |
[INFO] [stdout]   = note: the item `Default` is already defined here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `Iterator` is imported redundantly
[INFO] [stdout]  --> src/hmm.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::iter::Iterator;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]  --> /rustc/af4a5a13a15fa0c60e06321077ef452f769b42fd/library/std/src/prelude/mod.rs:134:13
[INFO] [stdout]   |
[INFO] [stdout]   = note: the item `Iterator` is already defined here
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `Default` is imported redundantly
[INFO] [stdout]  --> src/train.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::default::Default;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]  --> /rustc/af4a5a13a15fa0c60e06321077ef452f769b42fd/library/std/src/prelude/mod.rs:134:13
[INFO] [stdout]   |
[INFO] [stdout]   = note: the item `Default` is already defined here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0521]: borrowed data escapes outside of closure
[INFO] [stdout]   --> src/backtrack.rs:91:65
[INFO] [stdout]    |
[INFO] [stdout] 58 |         let is_not_stop_codon = |codon| {
[INFO] [stdout]    |             ----------------- `is_not_stop_codon` declared here, outside of the closure body
[INFO] [stdout] ...
[INFO] [stdout] 83 |                        iterator: Box<dyn Iterator<Item = (usize, &[u8])> + '_>|
[INFO] [stdout]    |                        -------- `iterator` is a reference that is only valid in the closure body
[INFO] [stdout] ...
[INFO] [stdout] 91 |                     (35..=self.seq.len() - 35).contains(off) && is_not_stop_codon(*codon)
[INFO] [stdout]    |                                                                 ^^^^^^^^^^^^^^^^^^^^^^^^^ `iterator` escapes the closure body here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0521]: borrowed data escapes outside of closure
[INFO] [stdout]   --> src/backtrack.rs:91:65
[INFO] [stdout]    |
[INFO] [stdout] 58 |         let is_not_stop_codon = |codon| {
[INFO] [stdout]    |             ----------------- `is_not_stop_codon` declared here, outside of the closure body
[INFO] [stdout] ...
[INFO] [stdout] 83 |                        iterator: Box<dyn Iterator<Item = (usize, &[u8])> + '_>|
[INFO] [stdout]    |                        -------- `iterator` is a reference that is only valid in the closure body
[INFO] [stdout] ...
[INFO] [stdout] 91 |                     (35..=self.seq.len() - 35).contains(off) && is_not_stop_codon(*codon)
[INFO] [stdout]    |                                                                 ^^^^^^^^^^^^^^^^^^^^^^^^^ `iterator` escapes the closure body here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error; 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0521`.
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error; 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0521`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `compbio` (bin "compbio") due to 2 previous errors; 2 warnings emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `compbio` (bin "compbio" test) due to 2 previous errors; 2 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "fc18758eb9c66d91c04f593be66163712142900b59b6adb7bd1af7fd2d0629c9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fc18758eb9c66d91c04f593be66163712142900b59b6adb7bd1af7fd2d0629c9", kill_on_drop: false }`
[INFO] [stdout] fc18758eb9c66d91c04f593be66163712142900b59b6adb7bd1af7fd2d0629c9
[INFO] checking nielsdos/FGS.rs against try#36dbcaee1a55543dfc181be52a69d99ff46ff62f for pr-122960-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnielsdos%2FFGS.rs" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/nielsdos/FGS.rs on toolchain 36dbcaee1a55543dfc181be52a69d99ff46ff62f
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+36dbcaee1a55543dfc181be52a69d99ff46ff62f" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/nielsdos/FGS.rs
[INFO] finished tweaking git repo https://github.com/nielsdos/FGS.rs
[INFO] tweaked toml for git repo https://github.com/nielsdos/FGS.rs written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/nielsdos/FGS.rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+36dbcaee1a55543dfc181be52a69d99ff46ff62f" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+36dbcaee1a55543dfc181be52a69d99ff46ff62f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2c63ef82d64104ca46fc6069f2f40abd785a2afabb35c14f8030faab2fca9723
[INFO] running `Command { std: "docker" "start" "-a" "2c63ef82d64104ca46fc6069f2f40abd785a2afabb35c14f8030faab2fca9723", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2c63ef82d64104ca46fc6069f2f40abd785a2afabb35c14f8030faab2fca9723", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2c63ef82d64104ca46fc6069f2f40abd785a2afabb35c14f8030faab2fca9723", kill_on_drop: false }`
[INFO] [stdout] 2c63ef82d64104ca46fc6069f2f40abd785a2afabb35c14f8030faab2fca9723
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+36dbcaee1a55543dfc181be52a69d99ff46ff62f" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e29e59ed675b9d0bc932b01b9a774d457dd35dece624dc549800126dadabb9ac
[INFO] running `Command { std: "docker" "start" "-a" "e29e59ed675b9d0bc932b01b9a774d457dd35dece624dc549800126dadabb9ac", kill_on_drop: false }`
[INFO] [stderr] Copying to /tmp/fixit
[INFO] [stderr] skipping non-2021 edition `2018`
[INFO] running `Command { std: "docker" "inspect" "e29e59ed675b9d0bc932b01b9a774d457dd35dece624dc549800126dadabb9ac", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e29e59ed675b9d0bc932b01b9a774d457dd35dece624dc549800126dadabb9ac", kill_on_drop: false }`
[INFO] [stdout] e29e59ed675b9d0bc932b01b9a774d457dd35dece624dc549800126dadabb9ac