[INFO] fetching crate rust-bio-tools 0.42.0...
[INFO] checking rust-bio-tools-0.42.0 against master#af4a5a13a15fa0c60e06321077ef452f769b42fd for pr-122960-3
[INFO] extracting crate rust-bio-tools 0.42.0 into /workspace/builds/worker-3-tc1/source
[INFO] validating manifest of crates.io crate rust-bio-tools 0.42.0 on toolchain af4a5a13a15fa0c60e06321077ef452f769b42fd
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-3-tc1/source/.cargo/config
[INFO] started tweaking crates.io crate rust-bio-tools 0.42.0
[INFO] finished tweaking crates.io crate rust-bio-tools 0.42.0
[INFO] tweaked toml for crates.io crate rust-bio-tools 0.42.0 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] crate crates.io crate rust-bio-tools 0.42.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded pest_meta v2.5.3
[INFO] [stderr]   Downloaded pest_generator v2.5.3
[INFO] [stderr]   Downloaded pest_derive v2.5.3
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded number_prefix v0.2.8
[INFO] [stderr]   Downloaded cxxbridge-flags v1.0.86
[INFO] [stderr]   Downloaded chrono-tz-build v0.0.3
[INFO] [stderr]   Downloaded c_vec v1.0.12
[INFO] [stderr]   Downloaded tera v1.17.1
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded indicatif v0.11.0
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded lz-str v0.1.0
[INFO] [stderr]   Downloaded cxx-build v1.0.86
[INFO] [stderr]   Downloaded bio v0.39.2
[INFO] [stderr]   Downloaded GSL v1.1.0
[INFO] [stderr]   Downloaded cxx v1.0.86
[INFO] [stderr]   Downloaded gimli v0.27.0
[INFO] [stderr]   Downloaded zstd-sys v2.0.5+zstd.1.5.2
[INFO] [stderr]   Downloaded chrono-tz v0.6.3
[INFO] [stderr]   Downloaded bstr v1.1.0
[INFO] [stderr]   Downloaded object v0.30.2
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.4
[INFO] [stderr]   Downloaded jsonm v0.1.4
[INFO] [stderr]   Downloaded rust-htslib v0.38.2
[INFO] [stderr]   Downloaded libm v0.2.6
[INFO] [stderr]   Downloaded cxxbridge-macro v1.0.86
[INFO] [stderr]   Downloaded pest v2.5.3
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded streaming-stats v0.2.3
[INFO] [stderr]   Downloaded curl-sys v0.4.59+curl-7.86.0
[INFO] [stderr]   Downloaded phf_generator v0.11.1
[INFO] [stderr]   Downloaded phf_codegen v0.11.1
[INFO] [stderr]   Downloaded xlsxwriter v0.3.5
[INFO] [stderr]   Downloaded hts-sys v2.0.3
[INFO] [stderr]   Downloaded openssl-src v111.24.0+1.1.1s
[INFO] [stderr]   Downloaded librocksdb-sys v0.8.0+7.4.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] bd019e78a87d3104f6854e4a4c5c90b737b297b70464a27621a68c1c755cb826
[INFO] running `Command { std: "docker" "start" "-a" "bd019e78a87d3104f6854e4a4c5c90b737b297b70464a27621a68c1c755cb826", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "bd019e78a87d3104f6854e4a4c5c90b737b297b70464a27621a68c1c755cb826", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bd019e78a87d3104f6854e4a4c5c90b737b297b70464a27621a68c1c755cb826", kill_on_drop: false }`
[INFO] [stdout] bd019e78a87d3104f6854e4a4c5c90b737b297b70464a27621a68c1c755cb826
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fd7b873a1a815b0ac462707cc9df4c9ef846da15a3bea1ef9fb49bf1ae947b93
[INFO] running `Command { std: "docker" "start" "-a" "fd7b873a1a815b0ac462707cc9df4c9ef846da15a3bea1ef9fb49bf1ae947b93", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.50
[INFO] [stderr]    Compiling syn v1.0.107
[INFO] [stderr]    Compiling libm v0.2.6
[INFO] [stderr]    Compiling libc v0.2.139
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling regex-syntax v0.6.28
[INFO] [stderr]     Checking either v1.8.0
[INFO] [stderr]     Checking futures v0.1.31
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling clang-sys v1.4.0
[INFO] [stderr]     Checking iovec v0.1.4
[INFO] [stderr]    Compiling aho-corasick v0.7.20
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]     Checking unicode-normalization v0.1.22
[INFO] [stderr]    Compiling thiserror v1.0.38
[INFO] [stderr]    Compiling libloading v0.7.4
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]     Checking bytes v0.4.12
[INFO] [stderr]     Checking num_cpus v1.15.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling parking_lot_core v0.6.3
[INFO] [stderr]     Checking time v0.1.45
[INFO] [stderr]    Compiling memoffset v0.5.6
[INFO] [stderr]    Compiling phf_shared v0.11.1
[INFO] [stderr]     Checking smallvec v0.6.14
[INFO] [stderr]     Checking getrandom v0.2.8
[INFO] [stdout] error[E0422]: cannot find struct, variant or union type `LineColumn` in crate `proc_macro`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/proc-macro2-1.0.50/src/wrapper.rs:475:33
[INFO] [stdout]     |
[INFO] [stdout] 475 |                 let proc_macro::LineColumn { line, column } = s.start();
[INFO] [stdout]     |                                 ^^^^^^^^^^ not found in `proc_macro`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this struct through its public re-export
[INFO] [stdout]     |
[INFO] [stdout] 1   + use crate::LineColumn;
[INFO] [stdout]     |
[INFO] [stdout] help: if you import `LineColumn`, refer to it directly
[INFO] [stdout]     |
[INFO] [stdout] 475 -                 let proc_macro::LineColumn { line, column } = s.start();
[INFO] [stdout] 475 +                 let LineColumn { line, column } = s.start();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0422]: cannot find struct, variant or union type `LineColumn` in crate `proc_macro`
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/proc-macro2-1.0.50/src/wrapper.rs:489:33
[INFO] [stdout]     |
[INFO] [stdout] 489 |                 let proc_macro::LineColumn { line, column } = s.end();
[INFO] [stdout]     |                                 ^^^^^^^^^^ not found in `proc_macro`
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this struct through its public re-export
[INFO] [stdout]     |
[INFO] [stdout] 1   + use crate::LineColumn;
[INFO] [stdout]     |
[INFO] [stdout] help: if you import `LineColumn`, refer to it directly
[INFO] [stdout]     |
[INFO] [stdout] 489 -                 let proc_macro::LineColumn { line, column } = s.end();
[INFO] [stdout] 489 +                 let LineColumn { line, column } = s.end();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0635]: unknown feature `proc_macro_span_shrink`
[INFO] [stdout]   --> /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/proc-macro2-1.0.50/src/lib.rs:92:30
[INFO] [stdout]    |
[INFO] [stdout] 92 |     feature(proc_macro_span, proc_macro_span_shrink)
[INFO] [stdout]    |                              ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling jobserver v0.1.25
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]     Checking once_cell v1.17.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking regex v1.7.1
[INFO] [stdout] error: aborting due to 3 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0422, E0635.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0422`.
[INFO] [stdout] 
[INFO] [stderr]    Compiling cc v1.0.78
[INFO] [stderr] error: could not compile `proc-macro2` (lib) due to 4 previous errors
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "fd7b873a1a815b0ac462707cc9df4c9ef846da15a3bea1ef9fb49bf1ae947b93", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fd7b873a1a815b0ac462707cc9df4c9ef846da15a3bea1ef9fb49bf1ae947b93", kill_on_drop: false }`
[INFO] [stdout] fd7b873a1a815b0ac462707cc9df4c9ef846da15a3bea1ef9fb49bf1ae947b93