[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 3a477a1d885c3e86543daefa05ec6e85824e8958
[INFO] checking informationsea/sequencetoolkit against master#af4a5a13a15fa0c60e06321077ef452f769b42fd for pr-122960-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain af4a5a13a15fa0c60e06321077ef452f769b42fd
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded which v4.4.2
[INFO] [stderr]   Downloaded xlsxwriter v0.6.0
[INFO] [stderr]   Downloaded jobserver v0.1.27
[INFO] [stderr]   Downloaded bindgen v0.65.1
[INFO] [stderr]   Downloaded rustix v0.38.28
[INFO] [stderr]   Downloaded termcolor v1.4.0
[INFO] [stderr]   Downloaded pkg-config v0.3.28
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded petgraph v0.6.4
[INFO] [stderr]   Downloaded tokio v1.35.1
[INFO] [stderr]   Downloaded csv v1.3.0
[INFO] [stderr]   Downloaded zstd-sys v2.0.9+zstd.1.5.5
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.5
[INFO] [stderr]   Downloaded linux-raw-sys v0.4.12
[INFO] [stderr]   Downloaded bio v1.5.0
[INFO] [stderr]   Downloaded clap_builder v4.4.11
[INFO] [stderr]   Downloaded nom v5.1.3
[INFO] [stderr]   Downloaded thiserror-impl v1.0.51
[INFO] [stderr]   Downloaded thiserror v1.0.51
[INFO] [stderr]   Downloaded vcf v0.6.1
[INFO] [stderr]   Downloaded windows-core v0.51.1
[INFO] [stderr]   Downloaded iana-time-zone v0.1.58
[INFO] [stderr]   Downloaded libm v0.2.8
[INFO] [stderr]   Downloaded curl-sys v0.4.70+curl-8.5.0
[INFO] [stderr]   Downloaded clang-sys v1.6.1
[INFO] [stderr]   Downloaded prettyplease v0.2.15
[INFO] [stderr]   Downloaded shlex v1.2.0
[INFO] [stderr]   Downloaded proc-macro2 v1.0.71
[INFO] [stderr]   Downloaded syn v2.0.43
[INFO] [stderr]   Downloaded pretty_env_logger v0.4.0
[INFO] [stderr]   Downloaded crossbeam-channel v0.5.10
[INFO] [stderr]   Downloaded hts-sys v2.1.1
[INFO] [stderr]   Downloaded rmp v0.8.12
[INFO] [stderr]   Downloaded rmp-serde v1.1.2
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded openssl-sys v0.9.98
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded temp-file v0.1.8
[INFO] [stderr]   Downloaded unicode-bidi v0.3.14
[INFO] [stderr]   Downloaded autocompress v0.5.1
[INFO] [stderr]   Downloaded md-5 v0.10.6
[INFO] [stderr]   Downloaded sha1 v0.10.6
[INFO] [stderr]   Downloaded cpufeatures v0.2.11
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded bzip2 v0.4.4
[INFO] [stderr]   Downloaded crossbeam-epoch v0.9.17
[INFO] [stderr]   Downloaded crossbeam-deque v0.8.4
[INFO] [stderr]   Downloaded crossbeam-utils v0.8.18
[INFO] [stderr]   Downloaded zstd-safe v7.0.0
[INFO] [stderr]   Downloaded zstd v0.13.0
[INFO] [stderr]   Downloaded autocompress v0.6.0
[INFO] [stderr]   Downloaded anyhow v1.0.76
[INFO] [stderr]   Downloaded bytecount v0.6.7
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded getset v0.1.2
[INFO] [stderr]   Downloaded openssl-src v300.2.1+3.2.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded ordered-float v3.9.2
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded bytemuck v1.14.0
[INFO] [stderr]   Downloaded safe_arch v0.7.1
[INFO] [stderr]   Downloaded wide v0.7.13
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded strum_macros v0.25.3
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded anstyle-parse v0.2.3
[INFO] [stderr]   Downloaded anstyle-query v1.0.2
[INFO] [stderr]   Downloaded anstyle-wincon v3.0.2
[INFO] [stderr]   Downloaded anstream v0.6.5
[INFO] [stderr]   Downloaded clap v4.4.11
[INFO] [stderr]   Downloaded csv-core v0.1.11
[INFO] [stderr]   Downloaded libc v0.2.151
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 68c4e2cf0291d4f8ff392c22b369fb3614f1d9a077fa3c95b6f93a16b7f4c7ca
[INFO] running `Command { std: "docker" "start" "-a" "68c4e2cf0291d4f8ff392c22b369fb3614f1d9a077fa3c95b6f93a16b7f4c7ca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "68c4e2cf0291d4f8ff392c22b369fb3614f1d9a077fa3c95b6f93a16b7f4c7ca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "68c4e2cf0291d4f8ff392c22b369fb3614f1d9a077fa3c95b6f93a16b7f4c7ca", kill_on_drop: false }`
[INFO] [stdout] 68c4e2cf0291d4f8ff392c22b369fb3614f1d9a077fa3c95b6f93a16b7f4c7ca
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+af4a5a13a15fa0c60e06321077ef452f769b42fd" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 13fac0ffe38257cd49089f9970b1f16b702845deb3368c3db33955f2c73c291d
[INFO] running `Command { std: "docker" "start" "-a" "13fac0ffe38257cd49089f9970b1f16b702845deb3368c3db33955f2c73c291d", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.151
[INFO] [stderr]    Compiling proc-macro2 v1.0.71
[INFO] [stderr]    Compiling pkg-config v0.3.28
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]     Checking memchr v2.6.4
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]    Compiling thiserror v1.0.51
[INFO] [stderr]    Compiling crossbeam-utils v0.8.18
[INFO] [stderr]    Compiling serde v1.0.193
[INFO] [stderr]    Compiling num-traits v0.2.17
[INFO] [stderr]     Checking miniz_oxide v0.7.1
[INFO] [stderr]     Checking either v1.9.0
[INFO] [stderr]    Compiling rayon-core v1.12.0
[INFO] [stderr]    Compiling zstd-safe v7.0.0
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]     Checking anstyle-parse v0.2.3
[INFO] [stderr]     Checking anstyle-query v1.0.2
[INFO] [stderr]     Checking once_cell v1.19.0
[INFO] [stderr]     Checking regex-syntax v0.8.2
[INFO] [stderr]     Checking flate2 v1.0.28
[INFO] [stderr]     Checking bytes v1.5.0
[INFO] [stderr]    Compiling anyhow v1.0.76
[INFO] [stderr]     Checking pin-project-lite v0.2.13
[INFO] [stderr]     Checking aho-corasick v1.1.2
[INFO] [stderr]     Checking anstream v0.6.5
[INFO] [stderr]    Compiling rustversion v1.0.14
[INFO] [stderr]    Compiling quote v1.0.33
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking clap_builder v4.4.11
[INFO] [stderr]     Checking crossbeam-epoch v0.9.17
[INFO] [stderr]    Compiling syn v2.0.43
[INFO] [stderr]     Checking tokio v1.35.1
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking crossbeam-deque v0.8.4
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]     Checking bytemuck v1.14.0
[INFO] [stderr]     Checking getrandom v0.2.11
[INFO] [stderr]    Compiling jobserver v0.1.27
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking ryu v1.0.16
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling cc v1.0.83
[INFO] [stderr]     Checking rayon v1.8.0
[INFO] [stderr]     Checking wide v0.7.13
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling generic-array v0.14.7
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking hashbrown v0.14.3
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]     Checking itoa v1.0.10
[INFO] [stderr]     Checking num-complex v0.4.4
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]    Compiling clang-sys v1.6.1
[INFO] [stderr]    Compiling rustix v0.38.28
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]    Compiling prettyplease v0.2.15
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling openssl-src v300.2.1+3.2.0
[INFO] [stderr]     Checking indexmap v2.1.0
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking regex-automata v0.4.3
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking bytecount v0.6.7
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling linux-raw-sys v0.4.12
[INFO] [stderr]    Compiling bitflags v2.4.1
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]    Compiling libloading v0.7.4
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]     Checking block-buffer v0.10.4
[INFO] [stderr]     Checking crypto-common v0.1.6
[INFO] [stderr]    Compiling home v0.5.9
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling zstd-sys v2.0.9+zstd.1.5.5
[INFO] [stderr]    Compiling openssl-sys v0.9.98
[INFO] [stderr]    Compiling libz-sys v1.1.12
[INFO] [stderr]    Compiling curl-sys v0.4.70+curl-8.5.0
[INFO] [stderr]    Compiling bindgen v0.65.1
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]     Checking digest v0.10.7
[INFO] [stderr]     Checking unicode-normalization v0.1.22
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]     Checking regex v1.10.2
[INFO] [stderr]    Compiling shlex v1.2.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]     Checking percent-encoding v2.3.1
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]     Checking unicode-bidi v0.3.14
[INFO] [stderr]    Compiling log v0.4.20
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]     Checking form_urlencoded v1.2.1
[INFO] [stderr]    Compiling nom v5.1.3
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking idna v0.5.0
[INFO] [stderr]     Checking arrayvec v0.5.2
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]     Checking getrandom v0.1.16
[INFO] [stderr]    Compiling backtrace v0.3.69
[INFO] [stderr]     Checking gimli v0.28.1
[INFO] [stderr]     Checking url v2.5.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling synstructure v0.12.6
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr] error: could not compile `simba` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/af4a5a13a15fa0c60e06321077ef452f769b42fd/bin/rustc --crate-name simba --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/simba-0.6.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="std"' --cfg 'feature="wide"' -C metadata=d46d7943182a1c9f -C extra-filename=-d46d7943182a1c9f --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern approx=/opt/rustwide/target/debug/deps/libapprox-531149d69dd0f9c8.rmeta --extern num_complex=/opt/rustwide/target/debug/deps/libnum_complex-d1d0586d55631b74.rmeta --extern num_traits=/opt/rustwide/target/debug/deps/libnum_traits-2ae9197f20cf5be8.rmeta --extern paste=/opt/rustwide/target/debug/deps/libpaste-fcfc1e8685b6531b.so --extern wide=/opt/rustwide/target/debug/deps/libwide-d8ceea452351c76e.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "13fac0ffe38257cd49089f9970b1f16b702845deb3368c3db33955f2c73c291d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "13fac0ffe38257cd49089f9970b1f16b702845deb3368c3db33955f2c73c291d", kill_on_drop: false }`
[INFO] [stdout] 13fac0ffe38257cd49089f9970b1f16b702845deb3368c3db33955f2c73c291d