[INFO] cloning repository https://github.com/alevar/sam2gtf
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/alevar/sam2gtf" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falevar%2Fsam2gtf", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falevar%2Fsam2gtf'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 2ddec7e23ae2f6ae3a9e6fd9ced47aa5dc81c4e7
[INFO] checking alevar/sam2gtf against master#b56aaec52bc0fa35591a872fb4aac81f606e265c for pr-122661-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falevar%2Fsam2gtf" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/alevar/sam2gtf
[INFO] finished tweaking git repo https://github.com/alevar/sam2gtf
[INFO] tweaked toml for git repo https://github.com/alevar/sam2gtf written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/alevar/sam2gtf on toolchain b56aaec52bc0fa35591a872fb4aac81f606e265c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b56aaec52bc0fa35591a872fb4aac81f606e265c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/alevar/sam2gtf already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b56aaec52bc0fa35591a872fb4aac81f606e265c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded curl-sys v0.4.76+curl-8.10.1
[INFO] [stderr]   Downloaded hts-sys v2.1.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cf8efcab8866f2cf4285301c7418e2f4f2a9b088c91ba69c40d5b659f81557f7" "/opt/rustwide/cargo-home/bin/cargo" "+b56aaec52bc0fa35591a872fb4aac81f606e265c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 77d33ce3e41bc12f361338a2d8f6b0cf49a9ba6def4d3a1ce427fc0d1f1004c7
[INFO] running `Command { std: "docker" "start" "-a" "77d33ce3e41bc12f361338a2d8f6b0cf49a9ba6def4d3a1ce427fc0d1f1004c7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "77d33ce3e41bc12f361338a2d8f6b0cf49a9ba6def4d3a1ce427fc0d1f1004c7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "77d33ce3e41bc12f361338a2d8f6b0cf49a9ba6def4d3a1ce427fc0d1f1004c7", kill_on_drop: false }`
[INFO] [stdout] 77d33ce3e41bc12f361338a2d8f6b0cf49a9ba6def4d3a1ce427fc0d1f1004c7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cf8efcab8866f2cf4285301c7418e2f4f2a9b088c91ba69c40d5b659f81557f7" "/opt/rustwide/cargo-home/bin/cargo" "+b56aaec52bc0fa35591a872fb4aac81f606e265c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2ec7cddf6eb2ddd36aa765753bf63d72aaa6504773dfedf6b7103558e604c53b
[INFO] running `Command { std: "docker" "start" "-a" "2ec7cddf6eb2ddd36aa765753bf63d72aaa6504773dfedf6b7103558e604c53b", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling unicode-ident v1.0.13
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]     Checking tinyvec_macros v0.1.1
[INFO] [stderr]    Compiling thiserror v1.0.63
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]     Checking regex-syntax v0.8.4
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]     Checking anstyle-parse v0.2.5
[INFO] [stderr]     Checking tinyvec v1.8.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking anstyle-query v1.1.1
[INFO] [stderr]     Checking colorchoice v1.0.2
[INFO] [stderr]     Checking percent-encoding v2.3.1
[INFO] [stderr]     Checking anstyle v1.0.8
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking unicode-bidi v0.3.15
[INFO] [stderr]     Checking form_urlencoded v1.2.1
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking clap_lex v0.7.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking anstream v0.6.15
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking clap_builder v4.5.18
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling syn v2.0.77
[INFO] [stderr]     Checking unicode-normalization v0.1.24
[INFO] [stderr]    Compiling cc v1.1.21
[INFO] [stderr]     Checking idna v0.5.0
[INFO] [stderr]     Checking regex-automata v0.4.7
[INFO] [stderr]     Checking url v2.5.2
[INFO] [stderr]    Compiling cmake v0.1.51
[INFO] [stderr]    Compiling openssl-src v300.3.2+3.3.2
[INFO] [stderr]     Checking clap v4.5.18
[INFO] [stderr]    Compiling openssl-sys v0.9.103
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.76+curl-8.10.1
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling hts-sys v2.1.4
[INFO] [stderr]    Compiling libz-sys v1.1.20
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking regex v1.10.6
[INFO] [stderr]    Compiling thiserror-impl v1.0.63
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]     Checking sam2gtf v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 35s
[INFO] running `Command { std: "docker" "inspect" "2ec7cddf6eb2ddd36aa765753bf63d72aaa6504773dfedf6b7103558e604c53b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2ec7cddf6eb2ddd36aa765753bf63d72aaa6504773dfedf6b7103558e604c53b", kill_on_drop: false }`
[INFO] [stdout] 2ec7cddf6eb2ddd36aa765753bf63d72aaa6504773dfedf6b7103558e604c53b