[INFO] fetching crate aminograph 0.0.1...
[INFO] checking aminograph-0.0.1 against master#aa067fb984d36462548bb785da221bfaf38253f0 for pr-122470
[INFO] extracting crate aminograph 0.0.1 into /workspace/builds/worker-2-tc1/source
[INFO] validating manifest of crates.io crate aminograph 0.0.1 on toolchain aa067fb984d36462548bb785da221bfaf38253f0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+aa067fb984d36462548bb785da221bfaf38253f0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-2-tc1/source/.cargo/config
[INFO] started tweaking crates.io crate aminograph 0.0.1
[INFO] finished tweaking crates.io crate aminograph 0.0.1
[INFO] tweaked toml for crates.io crate aminograph 0.0.1 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate crates.io crate aminograph 0.0.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+aa067fb984d36462548bb785da221bfaf38253f0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+aa067fb984d36462548bb785da221bfaf38253f0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "-a" "347441b09e690a2d2293268ed5694b5da89ba494d1c0fb45db67544e69c28030", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+aa067fb984d36462548bb785da221bfaf38253f0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
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[INFO] [stdout] warning: the item `AminoAcid` is imported redundantly
[INFO] [stdout]  --> src/alignment.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use crate::amino_acids::AminoAcid;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 6 | use crate::prelude::*;
[INFO] [stdout]   |     ----------------- the item `AminoAcid` is already imported here
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `AminoAcid` is imported redundantly
[INFO] [stdout]  --> src/alignment.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use crate::amino_acids::AminoAcid;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 6 | use crate::prelude::*;
[INFO] [stdout]   |     ----------------- the item `AminoAcid` is already imported here
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `AminoAcidMap` is imported redundantly
[INFO] [stdout]  --> src/alignment.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use crate::amino_acids::AminoAcidMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 6 | use crate::prelude::*;
[INFO] [stdout]   |     ----------------- the item `AminoAcidMap` is already imported here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `AminoAcidMap` is imported redundantly
[INFO] [stdout]  --> src/alignment.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use crate::amino_acids::AminoAcidMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 6 | use crate::prelude::*;
[INFO] [stdout]   |     ----------------- the item `AminoAcidMap` is already imported here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `FixedIndex` is imported redundantly
[INFO] [stdout]  --> src/alignment.rs:4:20
[INFO] [stdout]   |
[INFO] [stdout] 4 | use crate::fixed::{FixedIndex, FixedVec};
[INFO] [stdout]   |                    ^^^^^^^^^^
[INFO] [stdout] 5 | use crate::graph::Stats;
[INFO] [stdout] 6 | use crate::prelude::*;
[INFO] [stdout]   |     ----------------- the item `FixedIndex` is already imported here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `FixedVec` is imported redundantly
[INFO] [stdout]  --> src/alignment.rs:4:32
[INFO] [stdout]   |
[INFO] [stdout] 4 | use crate::fixed::{FixedIndex, FixedVec};
[INFO] [stdout]   |                                ^^^^^^^^
[INFO] [stdout] 5 | use crate::graph::Stats;
[INFO] [stdout] 6 | use crate::prelude::*;
[INFO] [stdout]   |     ----------------- the item `FixedVec` is already imported here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `FixedIndex` is imported redundantly
[INFO] [stdout]  --> src/alignment.rs:4:20
[INFO] [stdout]   |
[INFO] [stdout] 4 | use crate::fixed::{FixedIndex, FixedVec};
[INFO] [stdout]   |                    ^^^^^^^^^^
[INFO] [stdout] 5 | use crate::graph::Stats;
[INFO] [stdout] 6 | use crate::prelude::*;
[INFO] [stdout]   |     ----------------- the item `FixedIndex` is already imported here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `ArgminOp` is imported redundantly
[INFO] [stdout]  --> src/optimization/parameter.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use argmin::prelude::ArgminOp;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 4 | use argmin::prelude::*;
[INFO] [stdout]   |     ------------------ the item `ArgminOp` is already imported here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `FixedVec` is imported redundantly
[INFO] [stdout]  --> src/alignment.rs:4:32
[INFO] [stdout]   |
[INFO] [stdout] 4 | use crate::fixed::{FixedIndex, FixedVec};
[INFO] [stdout]   |                                ^^^^^^^^
[INFO] [stdout] 5 | use crate::graph::Stats;
[INFO] [stdout] 6 | use crate::prelude::*;
[INFO] [stdout]   |     ----------------- the item `FixedVec` is already imported here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `amino_acids::analyze_amino_acids`
[INFO] [stdout]  --> src/optimization/mod.rs:9:9
[INFO] [stdout]   |
[INFO] [stdout] 9 | pub use amino_acids::analyze_amino_acids;
[INFO] [stdout]   |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `ArgminOp` is imported redundantly
[INFO] [stdout]  --> src/optimization/parameter.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use argmin::prelude::ArgminOp;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 4 | use argmin::prelude::*;
[INFO] [stdout]   |     ------------------ the item `ArgminOp` is already imported here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `info`, `trace`
[INFO] [stdout]   --> src/prelude.rs:10:22
[INFO] [stdout]    |
[INFO] [stdout] 10 | pub use log::{debug, info, trace};
[INFO] [stdout]    |                      ^^^^  ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `amino_acids::analyze_amino_acids`
[INFO] [stdout]  --> src/optimization/mod.rs:9:9
[INFO] [stdout]   |
[INFO] [stdout] 9 | pub use amino_acids::analyze_amino_acids;
[INFO] [stdout]   |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `either::Either`
[INFO] [stdout]   --> src/prelude.rs:15:9
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub use either::Either;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `sorted_vec::SortedSet`
[INFO] [stdout]   --> src/prelude.rs:19:9
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub use sorted_vec::SortedSet;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `info`, `trace`
[INFO] [stdout]   --> src/prelude.rs:10:22
[INFO] [stdout]    |
[INFO] [stdout] 10 | pub use log::{debug, info, trace};
[INFO] [stdout]    |                      ^^^^  ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `PositionData`, `read_alignment`
[INFO] [stdout]   --> src/prelude.rs:22:28
[INFO] [stdout]    |
[INFO] [stdout] 22 | pub use crate::alignment::{read_alignment, Alignment, PositionData, PositionIndex, SequenceId};
[INFO] [stdout]    |                            ^^^^^^^^^^^^^^             ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `AminoAcidMap`
[INFO] [stdout]   --> src/prelude.rs:23:41
[INFO] [stdout]    |
[INFO] [stdout] 23 | pub use crate::amino_acids::{AminoAcid, AminoAcidMap};
[INFO] [stdout]    |                                         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `either::Either`
[INFO] [stdout]   --> src/prelude.rs:15:9
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub use either::Either;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `sorted_vec::SortedSet`
[INFO] [stdout]   --> src/prelude.rs:19:9
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub use sorted_vec::SortedSet;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `cursor`, `execute`, `queue`, `style`, `terminal`
[INFO] [stdout]   --> src/prelude.rs:34:21
[INFO] [stdout]    |
[INFO] [stdout] 34 | pub use crossterm::{cursor, execute, queue, style, terminal};
[INFO] [stdout]    |                     ^^^^^^  ^^^^^^^  ^^^^^  ^^^^^  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `PositionData`, `read_alignment`
[INFO] [stdout]   --> src/prelude.rs:22:28
[INFO] [stdout]    |
[INFO] [stdout] 22 | pub use crate::alignment::{read_alignment, Alignment, PositionData, PositionIndex, SequenceId};
[INFO] [stdout]    |                            ^^^^^^^^^^^^^^             ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::stdout`
[INFO] [stdout]   --> src/prelude.rs:35:9
[INFO] [stdout]    |
[INFO] [stdout] 35 | pub use std::io::stdout;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `AminoAcidMap`
[INFO] [stdout]   --> src/prelude.rs:23:41
[INFO] [stdout]    |
[INFO] [stdout] 23 | pub use crate::amino_acids::{AminoAcid, AminoAcidMap};
[INFO] [stdout]    |                                         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `ArgminOp` is imported redundantly
[INFO] [stdout]  --> src/order_optimize.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use argmin::prelude::ArgminOp;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 4 | use argmin::prelude::*;
[INFO] [stdout]   |     ------------------ the item `ArgminOp` is already imported here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `cursor`, `execute`, `queue`, `style`, `terminal`
[INFO] [stdout]   --> src/prelude.rs:34:21
[INFO] [stdout]    |
[INFO] [stdout] 34 | pub use crossterm::{cursor, execute, queue, style, terminal};
[INFO] [stdout]    |                     ^^^^^^  ^^^^^^^  ^^^^^  ^^^^^  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::stdout`
[INFO] [stdout]   --> src/prelude.rs:35:9
[INFO] [stdout]    |
[INFO] [stdout] 35 | pub use std::io::stdout;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `ArgminOp` is imported redundantly
[INFO] [stdout]  --> src/order_optimize.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use argmin::prelude::ArgminOp;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 4 | use argmin::prelude::*;
[INFO] [stdout]   |     ------------------ the item `ArgminOp` is already imported here
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `Problem` is never constructed
[INFO] [stdout]  --> src/order_optimize.rs:6:8
[INFO] [stdout]   |
[INFO] [stdout] 6 | struct Problem<K, F> {
[INFO] [stdout]   |        ^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/amino_acids.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 |     FromPrimitive,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_NUM_FromPrimitive_FOR_AminoAcid`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: the derive macro `FromPrimitive` may come from an old version of the `num_derive` crate, try updating your dependency with `cargo update -p num_derive`
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `FromPrimitive` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 16 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `Problem` is never constructed
[INFO] [stdout]  --> src/order_optimize.rs:6:8
[INFO] [stdout]   |
[INFO] [stdout] 6 | struct Problem<K, F> {
[INFO] [stdout]   |        ^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, they should be avoided as they go against expectation
[INFO] [stdout]   --> src/amino_acids.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 |     FromPrimitive,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: move this `impl` block outside the of the current constant `_IMPL_NUM_FromPrimitive_FOR_AminoAcid`
[INFO] [stdout]    = note: an `impl` definition is non-local if it is nested inside an item and may impact type checking outside of that item. This can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: one exception to the rule are anon-const (`const _: () = { ... }`) at top-level module and anon-const at the same nesting as the trait or type
[INFO] [stdout]    = note: this lint may become deny-by-default in the edition 2024 and higher, see the tracking issue <https://github.com/rust-lang/rust/issues/120363>
[INFO] [stdout]    = note: the derive macro `FromPrimitive` may come from an old version of the `num_derive` crate, try updating your dependency with `cargo update -p num_derive`
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `FromPrimitive` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 16 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 20s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "ed4bd692b733b1d5b7cf6e85b94ce67c3e24c0058fbdb6169f059fa78b3c9a63", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ed4bd692b733b1d5b7cf6e85b94ce67c3e24c0058fbdb6169f059fa78b3c9a63", kill_on_drop: false }`
[INFO] [stdout] ed4bd692b733b1d5b7cf6e85b94ce67c3e24c0058fbdb6169f059fa78b3c9a63