[INFO] fetching crate chemfiles-sys 0.10.40...
[INFO] checking chemfiles-sys-0.10.40 against master#b0696a5160711c068cb1f01b7437db7990d15750 for pr-121848
[INFO] extracting crate chemfiles-sys 0.10.40 into /workspace/builds/worker-7-tc1/source
[INFO] validating manifest of crates.io crate chemfiles-sys 0.10.40 on toolchain b0696a5160711c068cb1f01b7437db7990d15750
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b0696a5160711c068cb1f01b7437db7990d15750" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate chemfiles-sys 0.10.40
[INFO] finished tweaking crates.io crate chemfiles-sys 0.10.40
[INFO] tweaked toml for crates.io crate chemfiles-sys 0.10.40 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b0696a5160711c068cb1f01b7437db7990d15750" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b0696a5160711c068cb1f01b7437db7990d15750" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+b0696a5160711c068cb1f01b7437db7990d15750" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b0988aec0729a8275988edfa8fcddff9c37c516d125d4421f1106b90be618d1f
[INFO] running `Command { std: "docker" "start" "-a" "b0988aec0729a8275988edfa8fcddff9c37c516d125d4421f1106b90be618d1f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b0988aec0729a8275988edfa8fcddff9c37c516d125d4421f1106b90be618d1f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b0988aec0729a8275988edfa8fcddff9c37c516d125d4421f1106b90be618d1f", kill_on_drop: false }`
[INFO] [stdout] b0988aec0729a8275988edfa8fcddff9c37c516d125d4421f1106b90be618d1f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+b0696a5160711c068cb1f01b7437db7990d15750" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0105b46976c81d21d8a880251795f394b030c5f4456b5a6a854079ebabb81a90
[INFO] running `Command { std: "docker" "start" "-a" "0105b46976c81d21d8a880251795f394b030c5f4456b5a6a854079ebabb81a90", kill_on_drop: false }`
[INFO] [stderr]    Compiling chemfiles-sys v0.10.40 (/opt/rustwide/workdir)
[INFO] [stderr] The following warnings were emitted during compilation:
[INFO] [stderr] 
[INFO] [stderr] warning: chemfiles-sys@0.10.40: Compiler version doesn't include clang or GCC: "cc" "--version"
[INFO] [stderr] warning: chemfiles-sys@0.10.40: Compiler version doesn't include clang or GCC: "c++" "--version"
[INFO] [stderr] 
[INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.40 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-b016c75e41717085/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_GENERATOR = None
[INFO] [stderr]   cargo:warning=Compiler version doesn't include clang or GCC: "cc" "--version"
[INFO] [stderr]   cargo:warning=Compiler version doesn't include clang or GCC: "c++" "--version"
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE = None
[INFO] [stderr]   CMAKE = None
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-4f4608ad2cc33a2f/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/." "-DCHEMFILES_VERSION=0.10.4" "-DCHFL_RUST_PREBUILT_TARGET=x86_64-linux-gnu" "-DCHFL_RUST_PREBUILT_SHA256=2ac97eba5b79f8051cd86184e00379271c72e85d2bbcbcd50626b0ec602a1978" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-4f4608ad2cc33a2f/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The CXX compiler identification is GNU 11.4.0
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ - skipped
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- trying to download https://github.com/chemfiles/chemfiles-prebuilt/releases/download/v0.10.4/chemfiles-static.v0.10.4.x86_64-linux-gnu.tar.gz
[INFO] [stderr]   -- failed to download prebuilt chemfiles, building from sources
[INFO] [stderr]   -- The C compiler identification is GNU 11.4.0
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc - skipped
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Unpacking zlib sources
[INFO] [stderr]   -- Unpacking lzma sources
[INFO] [stderr]   -- Unpacking bzip2 sources
[INFO] [stderr]   -- Unpacking fmt sources
[INFO] [stderr]   -- Unpacking toml11 sources
[INFO] [stderr]   -- Unpacking tng sources
[INFO] [stderr]   -- Unpacking molfiles sources
[INFO] [stderr]   -- Unpacking mmtf-cpp sources
[INFO] [stderr]   -- Unpacking pugixml sources
[INFO] [stderr]   -- Unpacking gemmi sources
[INFO] [stderr]   -- Configuring done
[INFO] [stderr]   -- Generating done
[INFO] [stderr]   -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-4f4608ad2cc33a2f/out/build
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-4f4608ad2cc33a2f/out/build" && MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "cmake" "--build" "." "--target" "install" "--config" "Debug"
[INFO] [stderr]   [  2%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwt.c.o
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[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning (dev) at chemfiles/CMakeLists.txt:35 (option):
[INFO] [stderr]     Policy CMP0077 is not set: option() honors normal variables.  Run "cmake
[INFO] [stderr]     --help-policy CMP0077" for policy details.  Use the cmake_policy command to
[INFO] [stderr]     set the policy and suppress this warning.
[INFO] [stderr] 
[INFO] [stderr]     For compatibility with older versions of CMake, option is clearing the
[INFO] [stderr]     normal variable 'BUILD_SHARED_LIBS'.
[INFO] [stderr]   This warning is for project developers.  Use -Wno-dev to suppress it.
[INFO] [stderr] 
[INFO] [stderr]   CMake Warning:
[INFO] [stderr]     Manually-specified variables were not used by the project:
[INFO] [stderr] 
[INFO] [stderr]       CMAKE_ASM_COMPILER
[INFO] [stderr]       CMAKE_ASM_FLAGS
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:90: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1
[INFO] [stderr]   gmake[2]: *** Waiting for unfinished jobs....
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:174: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Frame.cpp.o] Error 1
[INFO] [stderr]   gmake[1]: *** [CMakeFiles/Makefile2:214: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2
[INFO] [stderr]   gmake: *** [Makefile:136: all] Error 2
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.50/src/lib.rs:1098:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 2
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5604289c62e6 - std::backtrace_rs::backtrace::libunwind::trace::h841aec340308c59e
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/../../backtrace/src/backtrace/libunwind.rs:104:5
[INFO] [stderr]      1:     0x5604289c62e6 - std::backtrace_rs::backtrace::trace_unsynchronized::h9dee2676d9d11960
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x5604289c62e6 - std::sys_common::backtrace::_print_fmt::h2d423a7a89b7862c
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/sys_common/backtrace.rs:68:5
[INFO] [stderr]      3:     0x5604289c62e6 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::hb83a544cb08b68f3
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/sys_common/backtrace.rs:44:22
[INFO] [stderr]      4:     0x5604289e9f1c - core::fmt::rt::Argument::fmt::hc1d14d10bb089188
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/core/src/fmt/rt.rs:142:9
[INFO] [stderr]      5:     0x5604289e9f1c - core::fmt::write::hfe45f0b918fcb7f8
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/core/src/fmt/mod.rs:1120:17
[INFO] [stderr]      6:     0x5604289c378f - std::io::Write::write_fmt::hafff8b00df89bf98
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/io/mod.rs:1846:15
[INFO] [stderr]      7:     0x5604289c6094 - std::sys_common::backtrace::_print::h847ae15a622b4882
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/sys_common/backtrace.rs:47:5
[INFO] [stderr]      8:     0x5604289c6094 - std::sys_common::backtrace::print::h708afa8c696ce578
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/sys_common/backtrace.rs:34:9
[INFO] [stderr]      9:     0x5604289c778b - std::panicking::default_hook::{{closure}}::h9f7cf46c599f7ff3
[INFO] [stderr]     10:     0x5604289c74e7 - std::panicking::default_hook::h3287a62f5d2ae67a
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/panicking.rs:292:9
[INFO] [stderr]     11:     0x5604289c7c2d - std::panicking::rust_panic_with_hook::hb88eafc3660b8bff
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/panicking.rs:779:13
[INFO] [stderr]     12:     0x5604289c7b02 - std::panicking::begin_panic_handler::{{closure}}::h6507929c0772d453
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/panicking.rs:657:13
[INFO] [stderr]     13:     0x5604289c67c6 - std::sys_common::backtrace::__rust_end_short_backtrace::h89ad0278467b1bd2
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/sys_common/backtrace.rs:171:18
[INFO] [stderr]     14:     0x5604289c7834 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/panicking.rs:645:5
[INFO] [stderr]     15:     0x56042893b115 - core::panicking::panic_fmt::hce2350285af4cdca
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/core/src/panicking.rs:72:14
[INFO] [stderr]     16:     0x560428950ad1 - cmake::fail::h2fe6952a8f322ede
[INFO] [stderr]     17:     0x560428950266 - cmake::run::hdca9fc34ca2fab6d
[INFO] [stderr]     18:     0x56042894cad2 - cmake::Config::build::hf54fc21f56b0eb51
[INFO] [stderr]     19:     0x56042893e795 - build_script_build::build_chemfiles::hed3254eb6e84437a
[INFO] [stderr]     20:     0x56042893db93 - build_script_build::main::h2e1f5fc6b7646b00
[INFO] [stderr]     21:     0x56042893bd43 - core::ops::function::FnOnce::call_once::h7e299a1585c25496
[INFO] [stderr]     22:     0x56042893b806 - std::sys_common::backtrace::__rust_begin_short_backtrace::hae05668219fee9a0
[INFO] [stderr]     23:     0x56042893b919 - std::rt::lang_start::{{closure}}::h61adbf1db4a237c8
[INFO] [stderr]     24:     0x5604289bf8d3 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hea0299f39373341f
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/core/src/ops/function.rs:284:13
[INFO] [stderr]     25:     0x5604289bf8d3 - std::panicking::try::do_call::h0cd3430abeddc4e2
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/panicking.rs:552:40
[INFO] [stderr]     26:     0x5604289bf8d3 - std::panicking::try::h1b6d10b095200de8
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/panicking.rs:516:19
[INFO] [stderr]     27:     0x5604289bf8d3 - std::panic::catch_unwind::h39fde36d17186f03
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/panic.rs:146:14
[INFO] [stderr]     28:     0x5604289bf8d3 - std::rt::lang_start_internal::{{closure}}::hdffbc47fb787c567
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/rt.rs:148:48
[INFO] [stderr]     29:     0x5604289bf8d3 - std::panicking::try::do_call::h8261032ff252bd66
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/panicking.rs:552:40
[INFO] [stderr]     30:     0x5604289bf8d3 - std::panicking::try::hfa26d7ee0ada6340
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/panicking.rs:516:19
[INFO] [stderr]     31:     0x5604289bf8d3 - std::panic::catch_unwind::h94fb8e4675a04827
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/panic.rs:146:14
[INFO] [stderr]     32:     0x5604289bf8d3 - std::rt::lang_start_internal::h86a38ee89c760c9f
[INFO] [stderr]                                  at /rustc/b0696a5160711c068cb1f01b7437db7990d15750/library/std/src/rt.rs:148:20
[INFO] [stderr]     33:     0x56042893b8f7 - std::rt::lang_start::hd9d693cdac1e29f6
[INFO] [stderr]     34:     0x56042893f265 - main
[INFO] [stderr]     35:     0x7f425180bd90 - <unknown>
[INFO] [stderr]     36:     0x7f425180be40 - __libc_start_main
[INFO] [stderr]     37:     0x56042893b735 - _start
[INFO] [stderr]     38:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "0105b46976c81d21d8a880251795f394b030c5f4456b5a6a854079ebabb81a90", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0105b46976c81d21d8a880251795f394b030c5f4456b5a6a854079ebabb81a90", kill_on_drop: false }`
[INFO] [stdout] 0105b46976c81d21d8a880251795f394b030c5f4456b5a6a854079ebabb81a90
