[INFO] fetching crate rust-sasa 0.2.2... [INFO] checking rust-sasa-0.2.2 against master#3139ff09e9d07f7700f8d15ed25a231e29c43627 for pr-121848-3 [INFO] extracting crate rust-sasa 0.2.2 into /workspace/builds/worker-4-tc1/source [INFO] validating manifest of crates.io crate rust-sasa 0.2.2 on toolchain 3139ff09e9d07f7700f8d15ed25a231e29c43627 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate rust-sasa 0.2.2 [INFO] finished tweaking crates.io crate rust-sasa 0.2.2 [INFO] tweaked toml for crates.io crate rust-sasa 0.2.2 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 63 packages to latest compatible versions [INFO] [stderr] Adding hash32 v0.2.1 (latest: v0.3.1) [INFO] [stderr] Adding heapless v0.7.17 (latest: v0.8.0) [INFO] [stderr] Adding nalgebra v0.32.6 (latest: v0.33.0) [INFO] [stderr] Adding proc-macro2 v0.4.30 (latest: v1.0.86) [INFO] [stderr] Adding quote v0.6.13 (latest: v1.0.36) [INFO] [stderr] Adding rstar v0.11.0 (latest: v0.12.0) [INFO] [stderr] Adding simba v0.8.1 (latest: v0.9.0) [INFO] [stderr] Adding unicode-xid v0.1.0 (latest: v0.2.5) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression. [INFO] [stderr] `license-file` should be used if the package uses a non-standard license. [INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information. [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded doc-cfg v0.1.0 [INFO] [stderr] Downloaded pdbtbx v0.11.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4aa1505df9b7890d6beebf2b2efdda0a6aa4920c332d637f09788dfd0a68ba59 [INFO] running `Command { std: "docker" "start" "-a" "4aa1505df9b7890d6beebf2b2efdda0a6aa4920c332d637f09788dfd0a68ba59", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4aa1505df9b7890d6beebf2b2efdda0a6aa4920c332d637f09788dfd0a68ba59", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4aa1505df9b7890d6beebf2b2efdda0a6aa4920c332d637f09788dfd0a68ba59", kill_on_drop: false }` [INFO] [stdout] 4aa1505df9b7890d6beebf2b2efdda0a6aa4920c332d637f09788dfd0a68ba59 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6ccfd88bb93d2a5bb18e88b58ea207a0be19acdba2436c4bc915d02a0ce10605 [INFO] running `Command { std: "docker" "start" "-a" "6ccfd88bb93d2a5bb18e88b58ea207a0be19acdba2436c4bc915d02a0ce10605", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression. [INFO] [stderr] `license-file` should be used if the package uses a non-standard license. [INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information. [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling semver v1.0.23 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Checking bytemuck v1.17.0 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Checking hash32 v0.2.1 [INFO] [stderr] Compiling heapless v0.8.0 [INFO] [stderr] Compiling serde v1.0.208 [INFO] [stderr] Checking adler2 v2.0.0 [INFO] [stderr] Checking safe_arch v0.7.2 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Compiling rustc_version v0.4.0 [INFO] [stderr] Checking spin v0.9.8 [INFO] [stderr] Checking miniz_oxide v0.8.0 [INFO] [stderr] Checking hash32 v0.3.1 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Compiling heapless v0.7.17 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking wide v0.7.28 [INFO] [stderr] Compiling snafu-derive v0.8.4 [INFO] [stderr] Compiling doc-cfg v0.1.0 [INFO] [stderr] Checking flate2 v1.0.32 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking rstar v0.11.0 [INFO] [stderr] Checking rstar v0.12.0 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking simba v0.8.1 [INFO] [stderr] Checking snafu v0.8.4 [INFO] [stderr] Checking pdbtbx v0.11.0 [INFO] [stderr] Checking nalgebra v0.32.6 [INFO] [stderr] Checking rust-sasa v0.2.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `snafu::Snafu` [INFO] [stdout] --> src/utils.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use snafu::Snafu; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `snafu::Snafu` [INFO] [stdout] --> src/utils.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use snafu::Snafu; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/test.rs:251:14 [INFO] [stdout] | [INFO] [stdout] 251 | let (mut pdb, _errors) = pdbtbx::open("./example.cif", StrictnessLevel::Medium).unwrap(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `residue_sasa` [INFO] [stdout] --> src/test.rs:282:13 [INFO] [stdout] | [INFO] [stdout] 282 | let residue_sasa = calculate_sasa(&pdb, None, None, SASALevel::Residue).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_residue_sasa` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/test.rs:278:14 [INFO] [stdout] | [INFO] [stdout] 278 | let (mut pdb, _errors) = pdbtbx::open("./example.cif", StrictnessLevel::Medium).unwrap(); [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: constant `FIXED_FOR_EXAMPLE` is never used [INFO] [stdout] --> src/test.rs:1:7 [INFO] [stdout] | [INFO] [stdout] 1 | const FIXED_FOR_EXAMPLE: [f32; 2622] = [ [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 15.86s [INFO] running `Command { std: "docker" "inspect" "6ccfd88bb93d2a5bb18e88b58ea207a0be19acdba2436c4bc915d02a0ce10605", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6ccfd88bb93d2a5bb18e88b58ea207a0be19acdba2436c4bc915d02a0ce10605", kill_on_drop: false }` [INFO] [stdout] 6ccfd88bb93d2a5bb18e88b58ea207a0be19acdba2436c4bc915d02a0ce10605 [INFO] checking rust-sasa-0.2.2 against try#a2cff3b7a9661c90ec0d581d3f3a69bb97c11138 for pr-121848-3 [INFO] extracting crate rust-sasa 0.2.2 into /workspace/builds/worker-4-tc2/source [INFO] validating manifest of crates.io crate rust-sasa 0.2.2 on toolchain a2cff3b7a9661c90ec0d581d3f3a69bb97c11138 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate rust-sasa 0.2.2 [INFO] finished tweaking crates.io crate rust-sasa 0.2.2 [INFO] tweaked toml for crates.io crate rust-sasa 0.2.2 written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 63 packages to latest compatible versions [INFO] [stderr] Adding hash32 v0.2.1 (latest: v0.3.1) [INFO] [stderr] Adding heapless v0.7.17 (latest: v0.8.0) [INFO] [stderr] Adding nalgebra v0.32.6 (latest: v0.33.0) [INFO] [stderr] Adding proc-macro2 v0.4.30 (latest: v1.0.86) [INFO] [stderr] Adding quote v0.6.13 (latest: v1.0.36) [INFO] [stderr] Adding rstar v0.11.0 (latest: v0.12.0) [INFO] [stderr] Adding simba v0.8.1 (latest: v0.9.0) [INFO] [stderr] Adding unicode-xid v0.1.0 (latest: v0.2.5) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression. [INFO] [stderr] `license-file` should be used if the package uses a non-standard license. [INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information. [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 34648f2765f4c60a42bca5f92425c26c10ea1ddc8692f3773972b0cbc67d9991 [INFO] running `Command { std: "docker" "start" "-a" "34648f2765f4c60a42bca5f92425c26c10ea1ddc8692f3773972b0cbc67d9991", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "34648f2765f4c60a42bca5f92425c26c10ea1ddc8692f3773972b0cbc67d9991", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "34648f2765f4c60a42bca5f92425c26c10ea1ddc8692f3773972b0cbc67d9991", kill_on_drop: false }` [INFO] [stdout] 34648f2765f4c60a42bca5f92425c26c10ea1ddc8692f3773972b0cbc67d9991 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ed12395e3a25bf52e83f8a1e1ef3d0a50ddeed68b214ce909adb4abb885d20d5 [INFO] running `Command { std: "docker" "start" "-a" "ed12395e3a25bf52e83f8a1e1ef3d0a50ddeed68b214ce909adb4abb885d20d5", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] `license` should be used if the package license can be expressed with a standard SPDX expression. [INFO] [stderr] `license-file` should be used if the package uses a non-standard license. [INFO] [stderr] See https://doc.rust-lang.org/cargo/reference/manifest.html#the-license-and-license-file-fields for more information. [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling semver v1.0.23 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Checking bytemuck v1.17.0 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Checking hash32 v0.2.1 [INFO] [stderr] Compiling heapless v0.8.0 [INFO] [stderr] Checking safe_arch v0.7.2 [INFO] [stderr] Checking adler2 v2.0.0 [INFO] [stderr] Compiling serde v1.0.208 [INFO] [stderr] Checking miniz_oxide v0.8.0 [INFO] [stderr] Compiling rustc_version v0.4.0 [INFO] [stderr] Checking spin v0.9.8 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Checking hash32 v0.3.1 [INFO] [stderr] Checking wide v0.7.28 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling heapless v0.7.17 [INFO] [stderr] Checking flate2 v1.0.32 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Compiling snafu-derive v0.8.4 [INFO] [stderr] Compiling doc-cfg v0.1.0 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking rstar v0.11.0 [INFO] [stderr] Checking rstar v0.12.0 [INFO] [stderr] Checking simba v0.8.1 [INFO] [stderr] Checking snafu v0.8.4 [INFO] [stderr] Checking pdbtbx v0.11.0 [INFO] [stderr] Checking nalgebra v0.32.6 [ERROR] error running command: no output for 300 seconds [INFO] running `Command { std: "docker" "inspect" "ed12395e3a25bf52e83f8a1e1ef3d0a50ddeed68b214ce909adb4abb885d20d5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ed12395e3a25bf52e83f8a1e1ef3d0a50ddeed68b214ce909adb4abb885d20d5", kill_on_drop: false }` [INFO] [stdout] ed12395e3a25bf52e83f8a1e1ef3d0a50ddeed68b214ce909adb4abb885d20d5