[INFO] fetching crate gchemol 0.1.7...
[INFO] checking gchemol-0.1.7 against master#3139ff09e9d07f7700f8d15ed25a231e29c43627 for pr-121848-3
[INFO] extracting crate gchemol 0.1.7 into /workspace/builds/worker-2-tc1/source
[INFO] validating manifest of crates.io crate gchemol 0.1.7 on toolchain 3139ff09e9d07f7700f8d15ed25a231e29c43627
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol 0.1.7
[INFO] finished tweaking crates.io crate gchemol 0.1.7
[INFO] tweaked toml for crates.io crate gchemol 0.1.7 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 209 packages to latest compatible versions
[INFO] [stderr]       Adding base64 v0.20.0 (latest: v0.22.1)
[INFO] [stderr]       Adding env_logger v0.10.2 (latest: v0.11.5)
[INFO] [stderr]       Adding fixedbitset v0.4.2 (latest: v0.5.7)
[INFO] [stderr]       Adding gchemol-parser v0.4.6 (latest: v0.5.1)
[INFO] [stderr]       Adding generic-array v0.14.7 (latest: v1.1.0)
[INFO] [stderr]       Adding grep v0.2.13 (latest: v0.3.1)
[INFO] [stderr]       Adding grep-printer v0.1.7 (latest: v0.2.1)
[INFO] [stderr]       Adding handlebars v4.0.1 (latest: v6.0.0)
[INFO] [stderr]       Adding hashbrown v0.12.3 (latest: v0.14.5)
[INFO] [stderr]       Adding indexmap v1.9.3 (latest: v2.4.0)
[INFO] [stderr]       Adding itertools v0.10.5 (latest: v0.13.0)
[INFO] [stderr]       Adding lazy-regex v2.5.0 (latest: v3.2.0)
[INFO] [stderr]       Adding lazy-regex-proc_macros v2.4.1 (latest: v3.2.0)
[INFO] [stderr]       Adding linux-raw-sys v0.4.14 (latest: v0.6.5)
[INFO] [stderr]       Adding minijinja v1.0.21 (latest: v2.1.2)
[INFO] [stderr]       Adding nalgebra v0.31.4 (latest: v0.33.0)
[INFO] [stderr]       Adding nalgebra-macros v0.1.0 (latest: v0.2.2)
[INFO] [stderr]       Adding ordered-float v3.9.2 (latest: v4.2.2)
[INFO] [stderr]       Adding roxmltree v0.18.1 (latest: v0.20.0)
[INFO] [stderr]       Adding simba v0.7.3 (latest: v0.9.0)
[INFO] [stderr]       Adding siphasher v0.3.11 (latest: v1.0.1)
[INFO] [stderr]       Adding syn v1.0.109 (latest: v2.0.75)
[INFO] [stderr]       Adding toml v0.7.8 (latest: v0.8.19)
[INFO] [stderr]       Adding toml_edit v0.19.15 (latest: v0.22.20)
[INFO] [stderr]       Adding uom v0.33.0 (latest: v0.36.0)
[INFO] [stderr]       Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.2+wasi-0.2.1)
[INFO] [stderr]       Adding windows-core v0.52.0 (latest: v0.58.0)
[INFO] [stderr]       Adding windows-sys v0.52.0 (latest: v0.59.0)
[INFO] [stderr]       Adding winnow v0.5.40 (latest: v0.6.18)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded ordered-float v3.9.2
[INFO] [stderr]   Downloaded unic-char-range v0.9.0
[INFO] [stderr]   Downloaded grep v0.3.1
[INFO] [stderr]   Downloaded grep v0.2.13
[INFO] [stderr]   Downloaded encoding_rs_io v0.1.7
[INFO] [stderr]   Downloaded humansize v2.1.3
[INFO] [stderr]   Downloaded extxyz v0.2.0
[INFO] [stderr]   Downloaded gchemol-lattice v0.1.2
[INFO] [stderr]   Downloaded gchemol-geometry v0.1.1
[INFO] [stderr]   Downloaded duct v0.13.7
[INFO] [stderr]   Downloaded toml v0.7.8
[INFO] [stderr]   Downloaded handlebars v4.0.1
[INFO] [stderr]   Downloaded gchemol-neighbors v0.1.3
[INFO] [stderr]   Downloaded bstr v1.10.0
[INFO] [stderr]   Downloaded bimap v0.6.3
[INFO] [stderr]   Downloaded rand_distr v0.4.3
[INFO] [stderr]   Downloaded gchemol-core v0.1.7
[INFO] [stderr]   Downloaded gchemol-gut v0.4.4
[INFO] [stderr]   Downloaded grep-printer v0.2.1
[INFO] [stderr]   Downloaded grep-reader v0.1.3
[INFO] [stderr]   Downloaded slug v0.1.6
[INFO] [stderr]   Downloaded shell-escape v0.1.5
[INFO] [stderr]   Downloaded gchemol-graph v0.1.6
[INFO] [stderr]   Downloaded grep-matcher v0.1.7
[INFO] [stderr]   Downloaded grep-regex v0.1.12
[INFO] [stderr]   Downloaded shared_child v1.0.1
[INFO] [stderr]   Downloaded str_indices v0.4.3
[INFO] [stderr]   Downloaded gchemol-parser v0.4.6
[INFO] [stderr]   Downloaded lazy-regex-proc_macros v2.4.1
[INFO] [stderr]   Downloaded pest_derive v2.7.11
[INFO] [stderr]   Downloaded base64 v0.20.0
[INFO] [stderr]   Downloaded grep-searcher v0.1.13
[INFO] [stderr]   Downloaded lazy-regex v2.5.0
[INFO] [stderr]   Downloaded globset v0.4.14
[INFO] [stderr]   Downloaded globwalk v0.9.1
[INFO] [stderr]   Downloaded deunicode v1.6.0
[INFO] [stderr]   Downloaded unic-common v0.9.0
[INFO] [stderr]   Downloaded unic-ucd-segment v0.9.0
[INFO] [stderr]   Downloaded nalgebra v0.31.4
[INFO] [stderr]   Downloaded ropey v1.6.1
[INFO] [stderr]   Downloaded minijinja v1.0.21
[INFO] [stderr]   Downloaded roxmltree v0.18.1
[INFO] [stderr]   Downloaded pest_meta v2.7.11
[INFO] [stderr]   Downloaded tera v1.20.0
[INFO] [stderr]   Downloaded gchemol-readwrite v0.1.11
[INFO] [stderr]   Downloaded uom v0.33.0
[INFO] [stderr]   Downloaded grep-printer v0.1.7
[INFO] [stderr]   Downloaded ignore v0.4.22
[INFO] [stderr]   Downloaded unic-char-property v0.9.0
[INFO] [stderr]   Downloaded simba v0.7.3
[INFO] [stderr]   Downloaded pest_generator v2.7.11
[INFO] [stderr]   Downloaded unic-segment v0.9.0
[INFO] [stderr]   Downloaded os_pipe v1.2.1
[INFO] [stderr]   Downloaded octree v0.1.0
[INFO] [stderr]   Downloaded grep-cli v0.1.10
[INFO] [stderr]   Downloaded envy v0.4.2
[INFO] [stderr]   Downloaded vecfx v0.1.6
[INFO] [stderr]   Downloaded unic-ucd-version v0.9.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 68a63f87b01c8b0376896f5426c4dc69d2ab7073be553d991ba9c687b568b79f
[INFO] running `Command { std: "docker" "start" "-a" "68a63f87b01c8b0376896f5426c4dc69d2ab7073be553d991ba9c687b568b79f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "68a63f87b01c8b0376896f5426c4dc69d2ab7073be553d991ba9c687b568b79f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "68a63f87b01c8b0376896f5426c4dc69d2ab7073be553d991ba9c687b568b79f", kill_on_drop: false }`
[INFO] [stdout] 68a63f87b01c8b0376896f5426c4dc69d2ab7073be553d991ba9c687b568b79f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 807e83b01d317950ceef256b9eccf1b16e3140e77fde846f739c9e2b3883236f
[INFO] running `Command { std: "docker" "start" "-a" "807e83b01d317950ceef256b9eccf1b16e3140e77fde846f739c9e2b3883236f", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.208
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]     Checking regex-syntax v0.8.4
[INFO] [stderr]     Checking log v0.4.22
[INFO] [stderr]    Compiling serde_json v1.0.125
[INFO] [stderr]     Checking itoa v1.0.11
[INFO] [stderr]     Checking ryu v1.0.18
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]    Compiling syn v2.0.75
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking bytemuck v1.17.0
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]    Compiling anyhow v1.0.86
[INFO] [stderr]     Checking grep-matcher v0.1.7
[INFO] [stderr]     Checking encoding_rs v0.8.34
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking anstyle-parse v0.2.5
[INFO] [stderr]     Checking safe_arch v0.7.2
[INFO] [stderr]     Checking anstyle-query v1.1.1
[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling siphasher v0.3.11
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]     Checking winnow v0.5.40
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.1
[INFO] [stderr]     Checking colorchoice v1.0.2
[INFO] [stderr]    Compiling phf_shared v0.11.2
[INFO] [stderr]     Checking anstream v0.6.15
[INFO] [stderr]     Checking wide v0.7.28
[INFO] [stderr]     Checking indexmap v2.4.0
[INFO] [stderr]     Checking powerfmt v0.2.0
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking clap_lex v0.7.2
[INFO] [stderr]     Checking linux-raw-sys v0.4.14
[INFO] [stderr]     Checking deranged v0.3.11
[INFO] [stderr]     Checking clap_builder v4.5.15
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking time-core v0.1.2
[INFO] [stderr]     Checking encoding_rs_io v0.1.7
[INFO] [stderr]     Checking num-conv v0.1.0
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking memmap2 v0.9.4
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking regex-automata v0.4.7
[INFO] [stderr]     Checking shared_child v1.0.1
[INFO] [stderr]     Checking is-terminal v0.4.13
[INFO] [stderr]     Checking os_pipe v1.2.1
[INFO] [stderr]     Checking humantime v2.1.0
[INFO] [stderr]     Checking time v0.3.36
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]     Checking duct v0.13.7
[INFO] [stderr]     Checking shell-escape v0.1.5
[INFO] [stderr]    Compiling ucd-trie v0.1.6
[INFO] [stderr]    Compiling phf v0.11.2
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]     Checking unic-common v0.9.0
[INFO] [stderr]     Checking unic-char-range v0.9.0
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking unic-ucd-version v0.9.0
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking unic-char-property v0.9.0
[INFO] [stderr]     Checking iana-time-zone v0.1.60
[INFO] [stderr]     Checking base64 v0.20.0
[INFO] [stderr]     Checking unic-ucd-segment v0.9.0
[INFO] [stderr]     Checking chrono v0.4.38
[INFO] [stderr]     Checking smallvec v1.13.2
[INFO] [stderr]     Checking minimal-lexical v0.2.1
[INFO] [stderr]     Checking deunicode v1.6.0
[INFO] [stderr]     Checking str_indices v0.4.3
[INFO] [stderr]     Checking humansize v2.1.3
[INFO] [stderr]     Checking xmlparser v0.13.6
[INFO] [stderr]     Checking quick-error v2.0.1
[INFO] [stderr]     Checking slug v0.1.6
[INFO] [stderr]     Checking ropey v1.6.1
[INFO] [stderr]     Checking uom v0.33.0
[INFO] [stderr]     Checking unic-segment v0.9.0
[INFO] [stderr]     Checking nom v7.1.3
[INFO] [stderr]     Checking roxmltree v0.18.1
[INFO] [stderr]     Checking tempfile v3.12.0
[INFO] [stderr]    Compiling serde_derive v1.0.208
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling thiserror-impl v1.0.63
[INFO] [stderr]    Compiling clap_derive v4.5.13
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]    Compiling thiserror v1.0.63
[INFO] [stderr]     Checking pest v2.7.11
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking bstr v1.10.0
[INFO] [stderr]     Checking regex v1.10.6
[INFO] [stderr]     Checking clap v4.5.16
[INFO] [stderr]     Checking env_logger v0.10.2
[INFO] [stderr]     Checking globset v0.4.14
[INFO] [stderr]     Checking grep-searcher v0.1.13
[INFO] [stderr]     Checking grep-regex v0.1.12
[INFO] [stderr]     Checking grep-cli v0.1.10
[INFO] [stderr]     Checking ignore v0.4.22
[INFO] [stderr]    Compiling pest_meta v2.7.11
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.1
[INFO] [stderr]     Checking globwalk v0.9.1
[INFO] [stderr]    Compiling lazy-regex-proc_macros v2.4.1
[INFO] [stderr]     Checking lazy-regex v2.5.0
[INFO] [stderr]    Compiling pest_generator v2.7.11
[INFO] [stderr]    Compiling pest_derive v2.7.11
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking serde_spanned v0.6.7
[INFO] [stderr]     Checking toml_datetime v0.6.8
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking bimap v0.6.3
[INFO] [stderr]     Checking envy v0.4.2
[INFO] [stderr]     Checking minijinja v1.0.21
[INFO] [stderr]     Checking toml_edit v0.19.15
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking simba v0.7.3
[INFO] [stderr]     Checking grep-printer v0.2.1
[INFO] [stderr]     Checking grep-printer v0.1.7
[INFO] [stderr]     Checking handlebars v4.0.1
[INFO] [stderr]     Checking grep v0.2.13
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking grep v0.3.1
[INFO] [stderr]     Checking grep-reader v0.1.3
[INFO] [stderr]     Checking extxyz v0.2.0
[INFO] [stderr]     Checking toml v0.7.8
[INFO] [stderr]     Checking gchemol-gut v0.4.4
[INFO] [stderr]     Checking gchemol-graph v0.1.6
[INFO] [stderr]     Checking gchemol-parser v0.4.6
[INFO] [stderr]    Compiling phf_generator v0.11.2
[INFO] [stderr]    Compiling phf_codegen v0.11.2
[INFO] [stderr]    Compiling chrono-tz-build v0.3.0
[INFO] [stderr]    Compiling chrono-tz v0.9.0
[INFO] [stderr]     Checking nalgebra v0.31.4
[INFO] [stderr]     Checking tera v1.20.0
[INFO] [stderr]     Checking vecfx v0.1.6
[INFO] [stderr]     Checking gchemol-lattice v0.1.2
[INFO] [stderr]     Checking octree v0.1.0
[INFO] [stderr]     Checking gchemol-geometry v0.1.1
[INFO] [stderr]     Checking gchemol-neighbors v0.1.3
[INFO] [stderr]     Checking gchemol-core v0.1.7
[INFO] [stderr]     Checking gchemol-readwrite v0.1.11
[INFO] [stderr]     Checking gchemol v0.1.7 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `gchemol_gut::prelude::*`
[INFO] [stdout]  --> tests/selection.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use gchemol_gut::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol_gut::utils::abbreviate_numbers_human_readable`
[INFO] [stdout]  --> tests/selection.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use gchemol_gut::utils::abbreviate_numbers_human_readable;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]  --> tests/molecule.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use gchemol::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `gchemol::prelude::*`
[INFO] [stdout]   --> tests/crystal.rs:60:9
[INFO] [stdout]    |
[INFO] [stdout] 60 |     use gchemol::prelude::*;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `mol`
[INFO] [stdout]   --> tests/io.rs:44:9
[INFO] [stdout]    |
[INFO] [stdout] 44 |     for mol in gchemol::io::read(&f).expect("read mol2") {
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_mol`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]   --> tests/molecule.rs:77:5
[INFO] [stdout]    |
[INFO] [stdout] 77 |     a.properties.store("secret", value);
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]    = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]    |
[INFO] [stdout] 77 |     let _ = a.properties.store("secret", value);
[INFO] [stdout]    |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]   --> tests/molecule.rs:83:5
[INFO] [stdout]    |
[INFO] [stdout] 83 |     a.properties.store("secret", value);
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]    |
[INFO] [stdout] 83 |     let _ = a.properties.store("secret", value);
[INFO] [stdout]    |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]   --> tests/molecule.rs:98:5
[INFO] [stdout]    |
[INFO] [stdout] 98 |     bond.properties.store("bond-order", value);
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]    |
[INFO] [stdout] 98 |     let _ = bond.properties.store("bond-order", value);
[INFO] [stdout]    |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> tests/molecule.rs:105:5
[INFO] [stdout]     |
[INFO] [stdout] 105 |     mol.properties.store("secret", value);
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 105 |     let _ = mol.properties.store("secret", value);
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 5 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 19.45s
[INFO] running `Command { std: "docker" "inspect" "807e83b01d317950ceef256b9eccf1b16e3140e77fde846f739c9e2b3883236f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "807e83b01d317950ceef256b9eccf1b16e3140e77fde846f739c9e2b3883236f", kill_on_drop: false }`
[INFO] [stdout] 807e83b01d317950ceef256b9eccf1b16e3140e77fde846f739c9e2b3883236f
[INFO] checking gchemol-0.1.7 against try#a2cff3b7a9661c90ec0d581d3f3a69bb97c11138 for pr-121848-3
[INFO] extracting crate gchemol 0.1.7 into /workspace/builds/worker-2-tc2/source
[INFO] validating manifest of crates.io crate gchemol 0.1.7 on toolchain a2cff3b7a9661c90ec0d581d3f3a69bb97c11138
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol 0.1.7
[INFO] finished tweaking crates.io crate gchemol 0.1.7
[INFO] tweaked toml for crates.io crate gchemol 0.1.7 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 209 packages to latest compatible versions
[INFO] [stderr]       Adding base64 v0.20.0 (latest: v0.22.1)
[INFO] [stderr]       Adding env_logger v0.10.2 (latest: v0.11.5)
[INFO] [stderr]       Adding fixedbitset v0.4.2 (latest: v0.5.7)
[INFO] [stderr]       Adding gchemol-parser v0.4.6 (latest: v0.5.1)
[INFO] [stderr]       Adding generic-array v0.14.7 (latest: v1.1.0)
[INFO] [stderr]       Adding grep v0.2.13 (latest: v0.3.1)
[INFO] [stderr]       Adding grep-printer v0.1.7 (latest: v0.2.1)
[INFO] [stderr]       Adding handlebars v4.0.1 (latest: v6.0.0)
[INFO] [stderr]       Adding hashbrown v0.12.3 (latest: v0.14.5)
[INFO] [stderr]       Adding indexmap v1.9.3 (latest: v2.4.0)
[INFO] [stderr]       Adding itertools v0.10.5 (latest: v0.13.0)
[INFO] [stderr]       Adding lazy-regex v2.5.0 (latest: v3.2.0)
[INFO] [stderr]       Adding lazy-regex-proc_macros v2.4.1 (latest: v3.2.0)
[INFO] [stderr]       Adding linux-raw-sys v0.4.14 (latest: v0.6.5)
[INFO] [stderr]       Adding minijinja v1.0.21 (latest: v2.1.2)
[INFO] [stderr]       Adding nalgebra v0.31.4 (latest: v0.33.0)
[INFO] [stderr]       Adding nalgebra-macros v0.1.0 (latest: v0.2.2)
[INFO] [stderr]       Adding ordered-float v3.9.2 (latest: v4.2.2)
[INFO] [stderr]       Adding roxmltree v0.18.1 (latest: v0.20.0)
[INFO] [stderr]       Adding simba v0.7.3 (latest: v0.9.0)
[INFO] [stderr]       Adding siphasher v0.3.11 (latest: v1.0.1)
[INFO] [stderr]       Adding syn v1.0.109 (latest: v2.0.75)
[INFO] [stderr]       Adding toml v0.7.8 (latest: v0.8.19)
[INFO] [stderr]       Adding toml_edit v0.19.15 (latest: v0.22.20)
[INFO] [stderr]       Adding uom v0.33.0 (latest: v0.36.0)
[INFO] [stderr]       Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.2+wasi-0.2.1)
[INFO] [stderr]       Adding windows-core v0.52.0 (latest: v0.58.0)
[INFO] [stderr]       Adding windows-sys v0.52.0 (latest: v0.59.0)
[INFO] [stderr]       Adding winnow v0.5.40 (latest: v0.6.18)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 34659b9d1538236ce81267d06e25b12732b252d7f4fcbfd92ed467dfcdaf9e98
[INFO] running `Command { std: "docker" "start" "-a" "34659b9d1538236ce81267d06e25b12732b252d7f4fcbfd92ed467dfcdaf9e98", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "34659b9d1538236ce81267d06e25b12732b252d7f4fcbfd92ed467dfcdaf9e98", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "34659b9d1538236ce81267d06e25b12732b252d7f4fcbfd92ed467dfcdaf9e98", kill_on_drop: false }`
[INFO] [stdout] 34659b9d1538236ce81267d06e25b12732b252d7f4fcbfd92ed467dfcdaf9e98
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2403f979a16c3f8aa22611ecd32ff6b12deceea4a663c98e0b2cd63a58053f8c
[INFO] running `Command { std: "docker" "start" "-a" "2403f979a16c3f8aa22611ecd32ff6b12deceea4a663c98e0b2cd63a58053f8c", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.208
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]     Checking regex-syntax v0.8.4
[INFO] [stderr]     Checking log v0.4.22
[INFO] [stderr]    Compiling serde_json v1.0.125
[INFO] [stderr]     Checking itoa v1.0.11
[INFO] [stderr]     Checking ryu v1.0.18
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling syn v2.0.75
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]    Compiling anyhow v1.0.86
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]     Checking bytemuck v1.17.0
[INFO] [stderr]     Checking grep-matcher v0.1.7
[INFO] [stderr]     Checking encoding_rs v0.8.34
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]     Checking anstyle-parse v0.2.5
[INFO] [stderr]     Checking winnow v0.5.40
[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]     Checking colorchoice v1.0.2
[INFO] [stderr]     Checking safe_arch v0.7.2
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling siphasher v0.3.11
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]     Checking anstyle-query v1.1.1
[INFO] [stderr]    Compiling phf_shared v0.11.2
[INFO] [stderr]     Checking indexmap v2.4.0
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]     Checking anstream v0.6.15
[INFO] [stderr]     Checking wide v0.7.28
[INFO] [stderr]     Checking powerfmt v0.2.0
[INFO] [stderr]     Checking linux-raw-sys v0.4.14
[INFO] [stderr]     Checking clap_lex v0.7.2
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking deranged v0.3.11
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking clap_builder v4.5.15
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking encoding_rs_io v0.1.7
[INFO] [stderr]     Checking time-core v0.1.2
[INFO] [stderr]     Checking num-conv v0.1.0
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking memmap2 v0.9.4
[INFO] [stderr]     Checking is-terminal v0.4.13
[INFO] [stderr]     Checking os_pipe v1.2.1
[INFO] [stderr]     Checking shared_child v1.0.1
[INFO] [stderr]     Checking humantime v2.1.0
[INFO] [stderr]     Checking time v0.3.36
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]     Checking shell-escape v0.1.5
[INFO] [stderr]     Checking duct v0.13.7
[INFO] [stderr]    Compiling ucd-trie v0.1.6
[INFO] [stderr]    Compiling phf v0.11.2
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]     Checking regex-automata v0.4.7
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]     Checking unic-char-range v0.9.0
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]     Checking unic-common v0.9.0
[INFO] [stderr]     Checking unic-char-property v0.9.0
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking unic-ucd-version v0.9.0
[INFO] [stderr]     Checking base64 v0.20.0
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking iana-time-zone v0.1.60
[INFO] [stderr]     Checking unic-ucd-segment v0.9.0
[INFO] [stderr]     Checking chrono v0.4.38
[INFO] [stderr]     Checking deunicode v1.6.0
[INFO] [stderr]     Checking smallvec v1.13.2
[INFO] [stderr]     Checking str_indices v0.4.3
[INFO] [stderr]     Checking minimal-lexical v0.2.1
[INFO] [stderr]     Checking humansize v2.1.3
[INFO] [stderr]     Checking slug v0.1.6
[INFO] [stderr]     Checking xmlparser v0.13.6
[INFO] [stderr]     Checking quick-error v2.0.1
[INFO] [stderr]     Checking uom v0.33.0
[INFO] [stderr]     Checking ropey v1.6.1
[INFO] [stderr]     Checking tempfile v3.12.0
[INFO] [stderr]     Checking nom v7.1.3
[INFO] [stderr]     Checking unic-segment v0.9.0
[INFO] [stderr]     Checking roxmltree v0.18.1
[INFO] [stderr]    Compiling serde_derive v1.0.208
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling thiserror-impl v1.0.63
[INFO] [stderr]    Compiling clap_derive v4.5.13
[INFO] [stderr]    Compiling thiserror v1.0.63
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]    Compiling pest v2.7.11
[INFO] [stderr]     Checking bstr v1.10.0
[INFO] [stderr]     Checking regex v1.10.6
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking env_logger v0.10.2
[INFO] [stderr]     Checking globset v0.4.14
[INFO] [stderr]     Checking grep-searcher v0.1.13
[INFO] [stderr]     Checking grep-regex v0.1.12
[INFO] [stderr]     Checking clap v4.5.16
[INFO] [stderr]     Checking grep-cli v0.1.10
[INFO] [stderr]     Checking ignore v0.4.22
[INFO] [stderr]     Checking globwalk v0.9.1
[INFO] [stderr]    Compiling pest_meta v2.7.11
[INFO] [stderr]    Compiling parse-zoneinfo v0.3.1
[INFO] [stderr]    Compiling lazy-regex-proc_macros v2.4.1
[INFO] [stderr]    Compiling pest_generator v2.7.11
[INFO] [stderr]     Checking lazy-regex v2.5.0
[INFO] [stderr]    Compiling pest_derive v2.7.11
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking toml_datetime v0.6.8
[INFO] [stderr]     Checking serde_spanned v0.6.7
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking envy v0.4.2
[INFO] [stderr]     Checking bimap v0.6.3
[INFO] [stderr]     Checking minijinja v1.0.21
[INFO] [stderr]     Checking toml_edit v0.19.15
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking simba v0.7.3
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking grep-printer v0.2.1
[INFO] [stderr]     Checking grep-printer v0.1.7
[INFO] [stderr]     Checking handlebars v4.0.1
[INFO] [stderr]     Checking grep v0.2.13
[INFO] [stderr]     Checking grep v0.3.1
[INFO] [stderr]     Checking grep-reader v0.1.3
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking extxyz v0.2.0
[INFO] [stderr]     Checking toml v0.7.8
[INFO] [stderr]     Checking gchemol-gut v0.4.4
[INFO] [stderr]    Compiling phf_generator v0.11.2
[INFO] [stderr]    Compiling phf_codegen v0.11.2
[INFO] [stderr]     Checking gchemol-graph v0.1.6
[INFO] [stderr]    Compiling chrono-tz-build v0.3.0
[INFO] [stderr]     Checking gchemol-parser v0.4.6
[INFO] [stderr]    Compiling chrono-tz v0.9.0
[INFO] [stderr]     Checking nalgebra v0.31.4
[INFO] [stderr]     Checking tera v1.20.0
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "2403f979a16c3f8aa22611ecd32ff6b12deceea4a663c98e0b2cd63a58053f8c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2403f979a16c3f8aa22611ecd32ff6b12deceea4a663c98e0b2cd63a58053f8c", kill_on_drop: false }`
[INFO] [stdout] 2403f979a16c3f8aa22611ecd32ff6b12deceea4a663c98e0b2cd63a58053f8c