[INFO] fetching crate oarfish 0.5.1... [INFO] checking oarfish-0.5.1 against master#3139ff09e9d07f7700f8d15ed25a231e29c43627 for pr-121848-3 [INFO] extracting crate oarfish 0.5.1 into /workspace/builds/worker-5-tc1/source [INFO] validating manifest of crates.io crate oarfish 0.5.1 on toolchain 3139ff09e9d07f7700f8d15ed25a231e29c43627 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate oarfish 0.5.1 [INFO] finished tweaking crates.io crate oarfish 0.5.1 [INFO] tweaked toml for crates.io crate oarfish 0.5.1 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] crate crates.io crate oarfish 0.5.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded tabled_derive v0.8.0 [INFO] [stderr] Downloaded typed-builder v0.19.1 [INFO] [stderr] Downloaded seqcol_rs v0.1.1 [INFO] [stderr] Downloaded typed-builder-macro v0.19.1 [INFO] [stderr] Downloaded path-tools v0.1.0 [INFO] [stderr] Downloaded foreign_vec v0.1.0 [INFO] [stderr] Downloaded array-init-cursor v0.2.0 [INFO] [stderr] Downloaded streaming-decompression v0.1.2 [INFO] [stderr] Downloaded hash_hasher v2.0.3 [INFO] [stderr] Downloaded kders v0.1.0 [INFO] [stderr] Downloaded atomic_float v1.0.0 [INFO] [stderr] Downloaded sha2-asm v0.6.4 [INFO] [stderr] Downloaded noodles-gtf v0.30.0 [INFO] [stderr] Downloaded planus v0.3.1 [INFO] [stderr] Downloaded arrow-format v0.8.1 [INFO] [stderr] Downloaded coitrees v0.4.0 [INFO] [stderr] Downloaded parquet-format-safe v0.2.4 [INFO] [stderr] Downloaded noodles-bam v0.66.0 [INFO] [stderr] Downloaded noodles-sam v0.63.0 [INFO] [stderr] Downloaded tabled v0.16.0 [INFO] [stderr] Downloaded papergrid v0.12.0 [INFO] [stderr] Downloaded noodles-csi v0.37.0 [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded needletail v0.5.1 [INFO] [stderr] Downloaded portable-atomic-util v0.2.2 [INFO] [stderr] Downloaded noodles-bgzf v0.32.0 [INFO] [stderr] Downloaded streaming-iterator v0.1.9 [INFO] [stderr] Downloaded ndarray v0.16.0 [INFO] [stderr] Downloaded parquet2 v0.17.2 [INFO] [stderr] Downloaded arrow2 v0.18.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a5e64fb25bbb0e34757279ee85aa1dfd78c88adc497242d8b5994f2435158275 [INFO] running `Command { std: "docker" "start" "-a" "a5e64fb25bbb0e34757279ee85aa1dfd78c88adc497242d8b5994f2435158275", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a5e64fb25bbb0e34757279ee85aa1dfd78c88adc497242d8b5994f2435158275", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a5e64fb25bbb0e34757279ee85aa1dfd78c88adc497242d8b5994f2435158275", kill_on_drop: false }` [INFO] [stdout] a5e64fb25bbb0e34757279ee85aa1dfd78c88adc497242d8b5994f2435158275 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e39eb8c942659ced9b0658b72049ce4ebef56e3d7c195da35aa4a9acd4160269 [INFO] running `Command { std: "docker" "start" "-a" "e39eb8c942659ced9b0658b72049ce4ebef56e3d7c195da35aa4a9acd4160269", kill_on_drop: false }` [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling syn v2.0.72 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Compiling serde v1.0.204 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Checking futures-sink v0.3.30 [INFO] [stderr] Checking lexical-util v0.8.5 [INFO] [stderr] Compiling semver v1.0.23 [INFO] [stderr] Checking crossbeam-channel v0.5.13 [INFO] [stderr] Checking futures-channel v0.3.30 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Checking bstr v1.10.0 [INFO] [stderr] Compiling zstd-safe v6.0.6 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Checking noodles-bgzf v0.32.0 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Checking lexical-parse-integer v0.8.6 [INFO] [stderr] Checking lexical-write-integer v0.8.5 [INFO] [stderr] Compiling cc v1.1.7 [INFO] [stderr] Checking noodles-core v0.15.0 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking bit-vec v0.7.0 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Compiling rustc_version v0.4.0 [INFO] [stderr] Checking lexical-write-float v0.8.5 [INFO] [stderr] Checking lexical-parse-float v0.8.5 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking crypto-common v0.1.6 [INFO] [stderr] Checking block-buffer v0.10.4 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Checking tracing-core v0.1.32 [INFO] [stderr] Checking array-init-cursor v0.2.0 [INFO] [stderr] Compiling serde_json v1.0.122 [INFO] [stderr] Checking fallible-streaming-iterator v0.1.9 [INFO] [stderr] Checking regex-syntax v0.6.29 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking streaming-decompression v0.1.2 [INFO] [stderr] Checking planus v0.3.1 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Checking lexical-core v0.8.5 [INFO] [stderr] Checking noisy_float v0.2.0 [INFO] [stderr] Compiling arrow2 v0.18.0 [INFO] [stderr] Compiling zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling sha2-asm v0.6.4 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Checking unicode-width v0.1.11 [INFO] [stderr] Checking cpufeatures v0.2.12 [INFO] [stderr] Compiling seq-macro v0.3.5 [INFO] [stderr] Checking overload v0.1.1 [INFO] [stderr] Checking bitflags v2.6.0 [INFO] [stderr] Checking nu-ansi-term v0.46.0 [INFO] [stderr] Checking sha2 v0.10.8 [INFO] [stderr] Checking papergrid v0.12.0 [INFO] [stderr] Checking tracing-log v0.2.0 [INFO] [stderr] Checking matchers v0.1.0 [INFO] [stderr] Checking num v0.4.3 [INFO] [stderr] Checking sharded-slab v0.1.7 [INFO] [stderr] Checking chrono v0.4.38 [INFO] [stderr] Checking itertools v0.13.0 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking needletail v0.5.1 [INFO] [stderr] Checking itertools v0.12.1 [INFO] [stderr] Checking thread_local v1.1.8 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking dyn-clone v1.0.17 [INFO] [stderr] Checking base64 v0.22.1 [INFO] [stderr] Checking foreign_vec v0.1.0 [INFO] [stderr] Checking hash_hasher v2.0.3 [INFO] [stderr] Checking simdutf8 v0.1.4 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.204 [INFO] [stderr] Compiling bytemuck_derive v1.7.0 [INFO] [stderr] Compiling futures-macro v0.3.30 [INFO] [stderr] Compiling async-stream-impl v0.3.5 [INFO] [stderr] Compiling async-trait v0.1.81 [INFO] [stderr] Checking async-stream v0.3.5 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Checking futures-util v0.3.30 [INFO] [stderr] Compiling tracing-attributes v0.1.27 [INFO] [stderr] Checking bytemuck v1.16.3 [INFO] [stderr] Compiling thiserror-impl v1.0.63 [INFO] [stderr] Compiling tabled_derive v0.8.0 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking indexmap v2.3.0 [INFO] [stderr] Checking safe_arch v0.7.2 [INFO] [stderr] Checking tracing v0.1.40 [INFO] [stderr] Checking thiserror v1.0.63 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking wide v0.7.26 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking noodles-csi v0.37.0 [INFO] [stderr] Checking ndarray-stats v0.5.1 [INFO] [stderr] Compiling typed-builder-macro v0.19.1 [INFO] [stderr] Checking noodles-sam v0.63.0 [INFO] [stderr] Checking futures-executor v0.3.30 [INFO] [stderr] Checking futures v0.3.30 [INFO] [stderr] Compiling clap_derive v4.5.13 [INFO] [stderr] Checking parquet-format-safe v0.2.4 [INFO] [stderr] Checking simba v0.8.1 [INFO] [stderr] Checking ethnum v1.5.0 [INFO] [stderr] Checking arrayvec v0.7.4 [INFO] [stderr] Checking streaming-iterator v0.1.9 [INFO] [stderr] Checking num-format v0.4.4 [INFO] [stderr] Checking tracing-subscriber v0.3.18 [INFO] [stderr] Checking typed-builder v0.19.1 [INFO] [stderr] Checking noodles-bam v0.66.0 [INFO] [stderr] Checking kders v0.1.0 [INFO] [stderr] Checking noodles-gtf v0.30.0 [INFO] [stderr] Checking tabled v0.16.0 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking arrow-format v0.8.1 [INFO] [stderr] Checking clap v4.5.13 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking ndarray v0.16.0 [INFO] [stderr] Checking path-tools v0.1.0 [INFO] [stderr] Checking atomic_float v1.0.0 [INFO] [stderr] Checking coitrees v0.4.0 [INFO] [stderr] Checking seqcol_rs v0.1.1 [INFO] [stderr] Checking nalgebra v0.32.6 [INFO] [stderr] Checking zstd v0.12.4 [INFO] [stderr] Checking parquet2 v0.17.2 [INFO] [stderr] Checking statrs v0.17.1 [INFO] [stderr] Checking oarfish v0.5.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: field `expected_count` is never read [INFO] [stdout] --> src/util/aux_counts.rs:9:9 [INFO] [stdout] | [INFO] [stdout] 6 | pub struct CountInfo { [INFO] [stdout] | --------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 9 | pub expected_count: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `length`, `effective_length`, and `tpm` are never read [INFO] [stdout] --> src/util/oarfish_types.rs:84:9 [INFO] [stdout] | [INFO] [stdout] 82 | pub struct ShortReadRecord { [INFO] [stdout] | --------------- fields in this struct [INFO] [stdout] 83 | pub name: String, [INFO] [stdout] 84 | pub length: i32, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 85 | pub effective_length: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] 86 | #[serde(rename = "TPM")] [INFO] [stdout] 87 | pub tpm: f64, [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `ShortReadRecord` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `expected_count` is never read [INFO] [stdout] --> src/util/aux_counts.rs:9:9 [INFO] [stdout] | [INFO] [stdout] 6 | pub struct CountInfo { [INFO] [stdout] | --------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 9 | pub expected_count: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `length`, `effective_length`, and `tpm` are never read [INFO] [stdout] --> src/util/oarfish_types.rs:84:9 [INFO] [stdout] | [INFO] [stdout] 82 | pub struct ShortReadRecord { [INFO] [stdout] | --------------- fields in this struct [INFO] [stdout] 83 | pub name: String, [INFO] [stdout] 84 | pub length: i32, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] 85 | pub effective_length: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] 86 | #[serde(rename = "TPM")] [INFO] [stdout] 87 | pub tpm: f64, [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `ShortReadRecord` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 30.71s [INFO] running `Command { std: "docker" "inspect" "e39eb8c942659ced9b0658b72049ce4ebef56e3d7c195da35aa4a9acd4160269", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e39eb8c942659ced9b0658b72049ce4ebef56e3d7c195da35aa4a9acd4160269", kill_on_drop: false }` [INFO] [stdout] e39eb8c942659ced9b0658b72049ce4ebef56e3d7c195da35aa4a9acd4160269