[INFO] cloning repository https://github.com/noahcape/seqproc-spotcheck
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/noahcape/seqproc-spotcheck" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ad3eef940c68853da417bb93ac64c2ecdffa21b3
[INFO] checking noahcape/seqproc-spotcheck against master#3139ff09e9d07f7700f8d15ed25a231e29c43627 for pr-121848-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/noahcape/seqproc-spotcheck on toolchain 3139ff09e9d07f7700f8d15ed25a231e29c43627
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/noahcape/seqproc-spotcheck
[INFO] finished tweaking git repo https://github.com/noahcape/seqproc-spotcheck
[INFO] tweaked toml for git repo https://github.com/noahcape/seqproc-spotcheck written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/noahcape/seqproc-spotcheck already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 55265d32ce12857ec07cdb0fc4a7ba813b044882e6641b06cb70868e4c65f536
[INFO] running `Command { std: "docker" "start" "-a" "55265d32ce12857ec07cdb0fc4a7ba813b044882e6641b06cb70868e4c65f536", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "55265d32ce12857ec07cdb0fc4a7ba813b044882e6641b06cb70868e4c65f536", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "55265d32ce12857ec07cdb0fc4a7ba813b044882e6641b06cb70868e4c65f536", kill_on_drop: false }`
[INFO] [stdout] 55265d32ce12857ec07cdb0fc4a7ba813b044882e6641b06cb70868e4c65f536
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 45507daefce064e618213a247a594aaa55a42425b6d7b7a96e9db6e30b02e220
[INFO] running `Command { std: "docker" "start" "-a" "45507daefce064e618213a247a594aaa55a42425b6d7b7a96e9db6e30b02e220", kill_on_drop: false }`
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[INFO] [stdout] warning: method `name` is never used
[INFO] [stdout]   --> src/main.rs:73:8
[INFO] [stdout]    |
[INFO] [stdout] 63 | impl Protocol {
[INFO] [stdout]    | ------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 73 |     fn name(&self) -> &str {
[INFO] [stdout]    |        ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `parse_record_id` is never used
[INFO] [stdout]    --> src/main.rs:141:8
[INFO] [stdout]     |
[INFO] [stdout] 90  | impl Program {
[INFO] [stdout]     | ------------ method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 141 |     fn parse_record_id<'a>(&self, id: &'a str) -> &'a str {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `as_path_buf` is never used
[INFO] [stdout]    --> src/main.rs:271:4
[INFO] [stdout]     |
[INFO] [stdout] 271 | fn as_path_buf(_str: &str) -> PathBuf {
[INFO] [stdout]     |    ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `compare_programs` is never used
[INFO] [stdout]    --> src/main.rs:316:4
[INFO] [stdout]     |
[INFO] [stdout] 316 | fn compare_programs(prog1: Program, prog2: Program, protocol: Protocol, r1: &str, r2: &str) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `compare_fastq` is never used
[INFO] [stdout]    --> src/main.rs:331:4
[INFO] [stdout]     |
[INFO] [stdout] 331 | fn compare_fastq(fastq1: &str, fastq2: &str) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `records` is never used
[INFO] [stdout]    --> src/main.rs:341:4
[INFO] [stdout]     |
[INFO] [stdout] 341 | fn records(fastq: File) -> Vec<Record> {
[INFO] [stdout]     |    ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `write_fastqs` is never used
[INFO] [stdout]    --> src/main.rs:364:4
[INFO] [stdout]     |
[INFO] [stdout] 364 | fn write_fastqs(outf: &mut File, records: Vec<Record>) -> Result<(), Error> {
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `name` is never used
[INFO] [stdout]   --> src/main.rs:73:8
[INFO] [stdout]    |
[INFO] [stdout] 63 | impl Protocol {
[INFO] [stdout]    | ------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 73 |     fn name(&self) -> &str {
[INFO] [stdout]    |        ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `parse_record_id` is never used
[INFO] [stdout]    --> src/main.rs:141:8
[INFO] [stdout]     |
[INFO] [stdout] 90  | impl Program {
[INFO] [stdout]     | ------------ method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 141 |     fn parse_record_id<'a>(&self, id: &'a str) -> &'a str {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `write_fastqs` is never used
[INFO] [stdout]    --> src/main.rs:364:4
[INFO] [stdout]     |
[INFO] [stdout] 364 | fn write_fastqs(outf: &mut File, records: Vec<Record>) -> Result<(), Error> {
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 7 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 14.85s
[INFO] running `Command { std: "docker" "inspect" "45507daefce064e618213a247a594aaa55a42425b6d7b7a96e9db6e30b02e220", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "45507daefce064e618213a247a594aaa55a42425b6d7b7a96e9db6e30b02e220", kill_on_drop: false }`
[INFO] [stdout] 45507daefce064e618213a247a594aaa55a42425b6d7b7a96e9db6e30b02e220