[INFO] fetching crate gchemol-core 0.1.7...
[INFO] checking gchemol-core-0.1.7 against master#3139ff09e9d07f7700f8d15ed25a231e29c43627 for pr-121848-3
[INFO] extracting crate gchemol-core 0.1.7 into /workspace/builds/worker-4-tc1/source
[INFO] validating manifest of crates.io crate gchemol-core 0.1.7 on toolchain 3139ff09e9d07f7700f8d15ed25a231e29c43627
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol-core 0.1.7
[INFO] finished tweaking crates.io crate gchemol-core 0.1.7
[INFO] tweaked toml for crates.io crate gchemol-core 0.1.7 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 124 packages to latest compatible versions
[INFO] [stderr]       Adding env_logger v0.10.2 (latest: v0.11.5)
[INFO] [stderr]       Adding fixedbitset v0.4.2 (latest: v0.5.7)
[INFO] [stderr]       Adding hashbrown v0.12.3 (latest: v0.14.5)
[INFO] [stderr]       Adding indexmap v1.9.3 (latest: v2.4.0)
[INFO] [stderr]       Adding itertools v0.10.5 (latest: v0.13.0)
[INFO] [stderr]       Adding linux-raw-sys v0.4.14 (latest: v0.6.5)
[INFO] [stderr]       Adding nalgebra v0.31.4 (latest: v0.33.0)
[INFO] [stderr]       Adding nalgebra-macros v0.1.0 (latest: v0.2.2)
[INFO] [stderr]       Adding ordered-float v3.9.2 (latest: v4.2.2)
[INFO] [stderr]       Adding simba v0.7.3 (latest: v0.9.0)
[INFO] [stderr]       Adding syn v1.0.109 (latest: v2.0.75)
[INFO] [stderr]       Adding toml v0.7.8 (latest: v0.8.19)
[INFO] [stderr]       Adding toml_edit v0.19.15 (latest: v0.22.20)
[INFO] [stderr]       Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.2+wasi-0.2.1)
[INFO] [stderr]       Adding windows-sys v0.52.0 (latest: v0.59.0)
[INFO] [stderr]       Adding winnow v0.5.40 (latest: v0.6.18)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded shell-escape v0.1.5
[INFO] [stderr]   Downloaded nalgebra v0.31.4
[INFO] [stderr]   Downloaded bimap v0.6.3
[INFO] [stderr]   Downloaded envy v0.4.2
[INFO] [stderr]   Downloaded rand_distr v0.4.3
[INFO] [stderr]   Downloaded gchemol-geometry v0.1.1
[INFO] [stderr]   Downloaded vecfx v0.1.6
[INFO] [stderr]   Downloaded gchemol-gut v0.4.4
[INFO] [stderr]   Downloaded gchemol-lattice v0.1.2
[INFO] [stderr]   Downloaded gchemol-graph v0.1.6
[INFO] [stderr]   Downloaded gchemol-neighbors v0.1.3
[INFO] [stderr]   Downloaded octree v0.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5b64c9f4fbc4333082566e8721704e846cf4aa74e065212d61cff46d45089761
[INFO] running `Command { std: "docker" "start" "-a" "5b64c9f4fbc4333082566e8721704e846cf4aa74e065212d61cff46d45089761", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5b64c9f4fbc4333082566e8721704e846cf4aa74e065212d61cff46d45089761", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5b64c9f4fbc4333082566e8721704e846cf4aa74e065212d61cff46d45089761", kill_on_drop: false }`
[INFO] [stdout] 5b64c9f4fbc4333082566e8721704e846cf4aa74e065212d61cff46d45089761
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4f29c9259ba09bc2fc9a95cd2e092f3dc822826e807ea92cdef788f14b808ec6
[INFO] running `Command { std: "docker" "start" "-a" "4f29c9259ba09bc2fc9a95cd2e092f3dc822826e807ea92cdef788f14b808ec6", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking bytemuck v1.17.0
[INFO] [stderr]    Compiling serde_derive v1.0.208
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
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[INFO] [stderr]     Checking is_terminal_polyfill v1.70.1
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[INFO] [stderr]     Checking anstyle-query v1.1.1
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]     Checking anstream v0.6.15
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking winnow v0.5.40
[INFO] [stderr]     Checking clap_lex v0.7.2
[INFO] [stderr]     Checking wide v0.7.28
[INFO] [stderr]     Checking linux-raw-sys v0.4.14
[INFO] [stderr]     Checking bitflags v2.6.0
[INFO] [stderr]     Checking clap_builder v4.5.15
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]     Checking regex-automata v0.4.7
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling anyhow v1.0.86
[INFO] [stderr]    Compiling clap_derive v4.5.13
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking is-terminal v0.4.13
[INFO] [stderr]     Checking shared_child v1.0.1
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[INFO] [stderr]     Checking duct v0.13.7
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[INFO] [stderr]     Checking serde v1.0.208
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[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking serde_spanned v0.6.7
[INFO] [stderr]     Checking toml_datetime v0.6.8
[INFO] [stderr]     Checking serde_json v1.0.125
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking envy v0.4.2
[INFO] [stderr]     Checking bimap v0.6.3
[INFO] [stderr]     Checking toml_edit v0.19.15
[INFO] [stderr]     Checking rand_chacha v0.3.1
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[INFO] [stderr]     Checking rand v0.8.5
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[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking toml v0.7.8
[INFO] [stderr]     Checking gchemol-graph v0.1.6
[INFO] [stderr]     Checking gchemol-gut v0.4.4
[INFO] [stderr]     Checking nalgebra v0.31.4
[INFO] [stderr]     Checking vecfx v0.1.6
[INFO] [stderr]     Checking gchemol-lattice v0.1.2
[INFO] [stderr]     Checking octree v0.1.0
[INFO] [stderr]     Checking gchemol-geometry v0.1.1
[INFO] [stderr]     Checking gchemol-neighbors v0.1.3
[INFO] [stderr]     Checking gchemol-core v0.1.7 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/property.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Point3` and `Vector3f`
[INFO] [stdout]  --> src/property.rs:7:19
[INFO] [stdout]   |
[INFO] [stdout] 7 | use crate::atom::{Point3, Vector3f};
[INFO] [stdout]   |                   ^^^^^^  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Atom` and `Molecule`
[INFO] [stdout]  --> src/property.rs:8:13
[INFO] [stdout]   |
[INFO] [stdout] 8 | use crate::{Atom, Molecule};
[INFO] [stdout]   |             ^^^^  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `NodeIndex` and `NxGraph`
[INFO] [stdout]   --> src/lib.rs:58:29
[INFO] [stdout]    |
[INFO] [stdout] 58 |     pub use gchemol_graph::{NodeIndex, NxGraph};
[INFO] [stdout]    |                             ^^^^^^^^^  ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/property.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Point3` and `Vector3f`
[INFO] [stdout]  --> src/property.rs:7:19
[INFO] [stdout]   |
[INFO] [stdout] 7 | use crate::atom::{Point3, Vector3f};
[INFO] [stdout]   |                   ^^^^^^  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Atom` and `Molecule`
[INFO] [stdout]  --> src/property.rs:8:13
[INFO] [stdout]   |
[INFO] [stdout] 8 | use crate::{Atom, Molecule};
[INFO] [stdout]   |             ^^^^  ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `NodeIndex` and `NxGraph`
[INFO] [stdout]   --> src/lib.rs:58:29
[INFO] [stdout]    |
[INFO] [stdout] 58 |     pub use gchemol_graph::{NodeIndex, NxGraph};
[INFO] [stdout]    |                             ^^^^^^^^^  ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::common`
[INFO] [stdout]  --> src/lattice.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use crate::common::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::common`
[INFO] [stdout]  --> src/lattice.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use crate::common::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `n`
[INFO] [stdout]    --> src/molecule.rs:106:13
[INFO] [stdout]     |
[INFO] [stdout] 106 |         let n = graph.number_of_nodes();
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_n`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `n`
[INFO] [stdout]    --> src/molecule.rs:106:13
[INFO] [stdout]     |
[INFO] [stdout] 106 |         let n = graph.number_of_nodes();
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_n`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]    --> src/molecule.rs:454:10
[INFO] [stdout]     |
[INFO] [stdout] 454 |     for (i, a) in mol.atoms() {
[INFO] [stdout]     |          ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `a`
[INFO] [stdout]    --> src/molecule.rs:454:13
[INFO] [stdout]     |
[INFO] [stdout] 454 |     for (i, a) in mol.atoms() {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_a`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 6 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `a_took`
[INFO] [stdout]    --> src/property.rs:173:9
[INFO] [stdout]     |
[INFO] [stdout] 173 |     let a_took: A = x.take("a").unwrap();
[INFO] [stdout]     |         ^^^^^^ help: if this is intentional, prefix it with an underscore: `_a_took`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/property.rs:156:5
[INFO] [stdout]     |
[INFO] [stdout] 156 |     x.store("k", d);
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 156 |     let _ = x.store("k", d);
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/property.rs:169:5
[INFO] [stdout]     |
[INFO] [stdout] 169 |     x.store("a", &a);
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 169 |     let _ = x.store("a", &a);
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 11 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 12.80s
[INFO] running `Command { std: "docker" "inspect" "4f29c9259ba09bc2fc9a95cd2e092f3dc822826e807ea92cdef788f14b808ec6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4f29c9259ba09bc2fc9a95cd2e092f3dc822826e807ea92cdef788f14b808ec6", kill_on_drop: false }`
[INFO] [stdout] 4f29c9259ba09bc2fc9a95cd2e092f3dc822826e807ea92cdef788f14b808ec6
