[INFO] fetching crate deepbiop-bam 0.1.7...
[INFO] checking deepbiop-bam-0.1.7 against master#3139ff09e9d07f7700f8d15ed25a231e29c43627 for pr-121848-3
[INFO] extracting crate deepbiop-bam 0.1.7 into /workspace/builds/worker-6-tc1/source
[INFO] validating manifest of crates.io crate deepbiop-bam 0.1.7 on toolchain 3139ff09e9d07f7700f8d15ed25a231e29c43627
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate deepbiop-bam 0.1.7
[INFO] finished tweaking crates.io crate deepbiop-bam 0.1.7
[INFO] tweaked toml for crates.io crate deepbiop-bam 0.1.7 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 185 packages to latest compatible versions
[INFO] [stderr]       Adding bit-vec v0.7.0 (latest: v0.8.0)
[INFO] [stderr]       Adding fixedbitset v0.4.2 (latest: v0.5.7)
[INFO] [stderr]       Adding heck v0.4.1 (latest: v0.5.0)
[INFO] [stderr]       Adding linux-raw-sys v0.4.14 (latest: v0.6.5)
[INFO] [stderr]       Adding miniz_oxide v0.7.4 (latest: v0.8.0)
[INFO] [stderr]       Adding nalgebra v0.32.6 (latest: v0.33.0)
[INFO] [stderr]       Adding ndarray v0.15.6 (latest: v0.16.1)
[INFO] [stderr]       Adding pyo3 v0.21.2 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-build-config v0.21.2 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-ffi v0.21.2 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-macros v0.21.2 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-macros-backend v0.21.2 (latest: v0.22.2)
[INFO] [stderr]       Adding rustc_version v0.1.7 (latest: v0.4.0)
[INFO] [stderr]       Adding semver v0.1.20 (latest: v1.0.23)
[INFO] [stderr]       Adding simba v0.8.1 (latest: v0.9.0)
[INFO] [stderr]       Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.2+wasi-0.2.1)
[INFO] [stderr]       Adding windows-sys v0.48.0 (latest: v0.59.0)
[INFO] [stderr]       Adding windows-sys v0.52.0 (latest: v0.59.0)
[INFO] [stderr]       Adding windows-targets v0.48.5 (latest: v0.52.6)
[INFO] [stderr]       Adding windows_aarch64_gnullvm v0.48.5 (latest: v0.52.6)
[INFO] [stderr]       Adding windows_aarch64_msvc v0.48.5 (latest: v0.52.6)
[INFO] [stderr]       Adding windows_i686_gnu v0.48.5 (latest: v0.52.6)
[INFO] [stderr]       Adding windows_i686_msvc v0.48.5 (latest: v0.52.6)
[INFO] [stderr]       Adding windows_x86_64_gnu v0.48.5 (latest: v0.52.6)
[INFO] [stderr]       Adding windows_x86_64_gnullvm v0.48.5 (latest: v0.52.6)
[INFO] [stderr]       Adding windows_x86_64_msvc v0.48.5 (latest: v0.52.6)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles v0.79.0
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded pyo3-macros v0.21.2
[INFO] [stderr]   Downloaded bit-vec v0.7.0
[INFO] [stderr]   Downloaded noodles-csi v0.37.0
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded noodles-fasta v0.42.0
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded noodles-sam v0.63.0
[INFO] [stderr]   Downloaded noodles-bam v0.66.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.32.0
[INFO] [stderr]   Downloaded pyo3-build-config v0.21.2
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.7
[INFO] [stderr]   Downloaded noodles-fastq v0.14.0
[INFO] [stderr]   Downloaded bio v2.0.1
[INFO] [stderr]   Downloaded pyo3-ffi v0.21.2
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.21.2
[INFO] [stderr]   Downloaded pyo3 v0.21.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] bb8810b907d5751fcf064968402ac4a678ce150cfa7bdd5fca8516df16fb3fed
[INFO] running `Command { std: "docker" "start" "-a" "bb8810b907d5751fcf064968402ac4a678ce150cfa7bdd5fca8516df16fb3fed", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "bb8810b907d5751fcf064968402ac4a678ce150cfa7bdd5fca8516df16fb3fed", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bb8810b907d5751fcf064968402ac4a678ce150cfa7bdd5fca8516df16fb3fed", kill_on_drop: false }`
[INFO] [stdout] bb8810b907d5751fcf064968402ac4a678ce150cfa7bdd5fca8516df16fb3fed
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9fb49626763b8f85743b5e39b8a5ce49a20e07df18e38685c07d00c4c0836082
[INFO] running `Command { std: "docker" "start" "-a" "9fb49626763b8f85743b5e39b8a5ce49a20e07df18e38685c07d00c4c0836082", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]    Compiling autocfg v1.3.0
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]     Checking regex-syntax v0.8.4
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]     Checking adler v1.0.2
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]     Checking crc32fast v1.4.2
[INFO] [stderr]     Checking lexical-util v0.8.5
[INFO] [stderr]    Compiling serde v1.0.208
[INFO] [stderr]     Checking miniz_oxide v0.7.4
[INFO] [stderr]    Compiling cc v1.1.13
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling ident_case v1.0.1
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]     Checking bytes v1.7.1
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking bitflags v2.6.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling lock_api v0.4.12
[INFO] [stderr]    Compiling parking_lot_core v0.9.10
[INFO] [stderr]     Checking lexical-parse-integer v0.8.6
[INFO] [stderr]     Checking lexical-write-integer v0.8.5
[INFO] [stderr]     Checking crossbeam-channel v0.5.13
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]     Checking bytemuck v1.17.0
[INFO] [stderr]    Compiling anyhow v1.0.86
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]     Checking lexical-parse-float v0.8.5
[INFO] [stderr]     Checking lexical-write-float v0.8.5
[INFO] [stderr]    Compiling pyo3-build-config v0.21.2
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking safe_arch v0.7.2
[INFO] [stderr]    Compiling cmake v0.1.51
[INFO] [stderr]     Checking indexmap v2.4.0
[INFO] [stderr]    Compiling syn v2.0.75
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking scopeguard v1.2.0
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking bit-vec v0.7.0
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking smallvec v1.13.2
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling portable-atomic v1.7.0
[INFO] [stderr]     Checking lexical-core v0.8.5
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking wide v0.7.28
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]     Checking linux-raw-sys v0.4.14
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]    Compiling libz-ng-sys v1.1.15
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling thiserror v1.0.63
[INFO] [stderr]     Checking regex-automata v0.4.7
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking parking_lot v0.12.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]    Compiling indoc v2.0.5
[INFO] [stderr]     Checking fastrand v2.1.0
[INFO] [stderr]     Checking unicode-width v0.1.13
[INFO] [stderr]     Checking smawk v0.3.2
[INFO] [stderr]     Checking unicode-linebreak v0.1.5
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking unindent v0.2.3
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]     Checking lexical v6.1.1
[INFO] [stderr]     Checking colored v2.1.0
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking textwrap v0.16.1
[INFO] [stderr]     Checking ryu v1.0.18
[INFO] [stderr]     Checking log v0.4.22
[INFO] [stderr]     Checking itoa v1.0.11
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]    Compiling pyo3-ffi v0.21.2
[INFO] [stderr]    Compiling pyo3 v0.21.2
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking ordered-float v4.2.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking simba v0.8.1
[INFO] [stderr]     Checking tempfile v3.12.0
[INFO] [stderr]     Checking bstr v1.10.0
[INFO] [stderr]     Checking regex v1.10.6
[INFO] [stderr]    Compiling darling_core v0.20.10
[INFO] [stderr]    Compiling pyo3-macros-backend v0.21.2
[INFO] [stderr]     Checking noodles-core v0.15.0
[INFO] [stderr]     Checking noodles-fastq v0.14.0
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling serde_derive v1.0.208
[INFO] [stderr]    Compiling thiserror-impl v1.0.63
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]    Compiling darling_macro v0.20.10
[INFO] [stderr]    Compiling darling v0.20.10
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]    Compiling derive_builder_core v0.20.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling pyo3-macros v0.21.2
[INFO] [stderr]    Compiling derive_builder_macro v0.20.0
[INFO] [stderr]     Checking derive_builder v0.20.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking nalgebra v0.32.6
[INFO] [stderr]     Checking multimap v0.10.0
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking flate2 v1.0.31
[INFO] [stderr]     Checking noodles-bgzf v0.32.0
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]     Checking deepbiop-utils v0.1.7
[INFO] [stderr]     Checking noodles-csi v0.37.0
[INFO] [stderr]     Checking noodles-fasta v0.42.0
[INFO] [stderr]     Checking noodles-sam v0.63.0
[INFO] [stderr]     Checking noodles-bam v0.66.0
[INFO] [stderr]     Checking noodles v0.79.0
[INFO] [stderr]     Checking deepbiop-bam v0.1.7 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking statrs v0.17.1
[INFO] [stderr]     Checking bio v2.0.1
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 23.32s
[INFO] running `Command { std: "docker" "inspect" "9fb49626763b8f85743b5e39b8a5ce49a20e07df18e38685c07d00c4c0836082", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9fb49626763b8f85743b5e39b8a5ce49a20e07df18e38685c07d00c4c0836082", kill_on_drop: false }`
[INFO] [stdout] 9fb49626763b8f85743b5e39b8a5ce49a20e07df18e38685c07d00c4c0836082
