[INFO] fetching crate biodiff-align 1.2.1-preview...
[INFO] checking biodiff-align-1.2.1-preview against master#3139ff09e9d07f7700f8d15ed25a231e29c43627 for pr-121848-3
[INFO] extracting crate biodiff-align 1.2.1-preview into /workspace/builds/worker-4-tc1/source
[INFO] validating manifest of crates.io crate biodiff-align 1.2.1-preview on toolchain 3139ff09e9d07f7700f8d15ed25a231e29c43627
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate biodiff-align 1.2.1-preview
[INFO] finished tweaking crates.io crate biodiff-align 1.2.1-preview
[INFO] tweaked toml for crates.io crate biodiff-align 1.2.1-preview written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 90 packages to latest compatible versions
[INFO] [stderr]       Adding bio v1.6.0 (latest: v2.0.1)
[INFO] [stderr]       Adding bit-set v0.5.3 (latest: v0.8.0)
[INFO] [stderr]       Adding bit-vec v0.6.3 (latest: v0.8.0)
[INFO] [stderr]       Adding fixedbitset v0.4.2 (latest: v0.5.7)
[INFO] [stderr]       Adding heck v0.4.1 (latest: v0.5.0)
[INFO] [stderr]       Adding itertools v0.11.0 (latest: v0.13.0)
[INFO] [stderr]       Adding multimap v0.9.1 (latest: v0.10.0)
[INFO] [stderr]       Adding nalgebra v0.29.0 (latest: v0.33.0)
[INFO] [stderr]       Adding nalgebra-macros v0.1.0 (latest: v0.2.2)
[INFO] [stderr]       Adding ndarray v0.15.6 (latest: v0.16.1)
[INFO] [stderr]       Adding ordered-float v3.9.2 (latest: v4.2.2)
[INFO] [stderr]       Adding rustc_version v0.1.7 (latest: v0.4.0)
[INFO] [stderr]       Adding semver v0.1.20 (latest: v1.0.23)
[INFO] [stderr]       Adding simba v0.6.0 (latest: v0.9.0)
[INFO] [stderr]       Adding statrs v0.16.1 (latest: v0.17.1)
[INFO] [stderr]       Adding strum v0.25.0 (latest: v0.26.3)
[INFO] [stderr]       Adding strum_macros v0.25.3 (latest: v0.26.4)
[INFO] [stderr]       Adding syn v1.0.109 (latest: v2.0.75)
[INFO] [stderr]       Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.2+wasi-0.2.1)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded biodiff-wfa2-sys v2.3.5
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded ordered-float v3.9.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b844e02bd47577e3f89568c111461d2153e9f240ba192f2136fa0fd813793801
[INFO] running `Command { std: "docker" "start" "-a" "b844e02bd47577e3f89568c111461d2153e9f240ba192f2136fa0fd813793801", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b844e02bd47577e3f89568c111461d2153e9f240ba192f2136fa0fd813793801", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b844e02bd47577e3f89568c111461d2153e9f240ba192f2136fa0fd813793801", kill_on_drop: false }`
[INFO] [stdout] b844e02bd47577e3f89568c111461d2153e9f240ba192f2136fa0fd813793801
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 077fc440ef06734719b6892c8a1a2387c8f942470c18987e5d60e4b4618088c5
[INFO] running `Command { std: "docker" "start" "-a" "077fc440ef06734719b6892c8a1a2387c8f942470c18987e5d60e4b4618088c5", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling serde v1.0.208
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]     Checking bytemuck v1.17.0
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling syn v2.0.75
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking safe_arch v0.7.2
[INFO] [stderr]    Compiling cc v1.1.13
[INFO] [stderr]    Compiling thiserror v1.0.63
[INFO] [stderr]     Checking regex-syntax v0.8.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]    Compiling anyhow v1.0.86
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking wide v0.7.28
[INFO] [stderr]     Checking ryu v1.0.18
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking itoa v1.0.11
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]    Compiling cmake v0.1.51
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking indexmap v2.4.0
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling biodiff-wfa2-sys v2.3.5
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking regex-automata v0.4.7
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling serde_derive v1.0.208
[INFO] [stderr]    Compiling thiserror-impl v1.0.63
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]     Checking regex v1.10.6
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking biodiff-align v1.2.1-preview (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 13.92s
[INFO] running `Command { std: "docker" "inspect" "077fc440ef06734719b6892c8a1a2387c8f942470c18987e5d60e4b4618088c5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "077fc440ef06734719b6892c8a1a2387c8f942470c18987e5d60e4b4618088c5", kill_on_drop: false }`
[INFO] [stdout] 077fc440ef06734719b6892c8a1a2387c8f942470c18987e5d60e4b4618088c5
