[INFO] cloning repository https://github.com/SciLifeLab/umi-transfer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SciLifeLab/umi-transfer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ed0f04e6a50bfd34424d5a39f867c4b545dc2fbe
[INFO] checking SciLifeLab/umi-transfer against master#3139ff09e9d07f7700f8d15ed25a231e29c43627 for pr-121848-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/SciLifeLab/umi-transfer on toolchain 3139ff09e9d07f7700f8d15ed25a231e29c43627
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/SciLifeLab/umi-transfer
[INFO] finished tweaking git repo https://github.com/SciLifeLab/umi-transfer
[INFO] tweaked toml for git repo https://github.com/SciLifeLab/umi-transfer written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/SciLifeLab/umi-transfer already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded comma v1.0.0
[INFO] [stderr]   Downloaded rexpect v0.5.0
[INFO] [stderr]   Downloaded file-format v0.24.0
[INFO] [stderr]   Downloaded gzp v0.11.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2f15ee30850b0ef4d201cc4d475591cc9eb62d491eb4e92df3dd667190f1ddb2
[INFO] running `Command { std: "docker" "start" "-a" "2f15ee30850b0ef4d201cc4d475591cc9eb62d491eb4e92df3dd667190f1ddb2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2f15ee30850b0ef4d201cc4d475591cc9eb62d491eb4e92df3dd667190f1ddb2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2f15ee30850b0ef4d201cc4d475591cc9eb62d491eb4e92df3dd667190f1ddb2", kill_on_drop: false }`
[INFO] [stdout] 2f15ee30850b0ef4d201cc4d475591cc9eb62d491eb4e92df3dd667190f1ddb2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fab35bd7792555d1cc551653dcdb32cee20791ac0dc70d899550675bb04a960e
[INFO] running `Command { std: "docker" "start" "-a" "fab35bd7792555d1cc551653dcdb32cee20791ac0dc70d899550675bb04a960e", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.81
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]     Checking regex-syntax v0.8.3
[INFO] [stderr]    Compiling cc v1.0.95
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling serde v1.0.199
[INFO] [stderr]    Compiling thiserror v1.0.59
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]     Checking anstyle v1.0.6
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]     Checking bitflags v2.5.0
[INFO] [stderr]     Checking bytemuck v1.15.0
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling lock_api v0.4.12
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling rustversion v1.0.15
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]     Checking linux-raw-sys v0.4.13
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking utf8parse v0.2.1
[INFO] [stderr]     Checking fastrand v2.1.0
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]     Checking anstyle-parse v0.2.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking wide v0.7.16
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking log v0.4.21
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking anstyle-query v1.0.2
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]     Checking predicates-core v1.0.6
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]     Checking either v1.11.0
[INFO] [stderr]     Checking colorchoice v1.0.0
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]     Checking anstream v0.6.13
[INFO] [stderr]    Compiling syn v2.0.60
[INFO] [stderr]     Checking miniz_oxide v0.7.2
[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking spin v0.9.8
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking termtree v0.4.1
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking normalize-line-endings v0.3.0
[INFO] [stderr]     Checking futures-core v0.3.30
[INFO] [stderr]     Checking difflib v0.4.0
[INFO] [stderr]     Checking clap_lex v0.7.0
[INFO] [stderr]     Checking futures-sink v0.3.30
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]     Checking is_ci v1.2.0
[INFO] [stderr]     Checking unicode-width v0.1.12
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling libz-sys v1.1.16
[INFO] [stderr]    Compiling libdeflate-sys v0.12.0
[INFO] [stderr]     Checking indexmap v2.2.6
[INFO] [stderr]     Checking float-cmp v0.9.0
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking clap_builder v4.5.2
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking predicates-tree v1.0.9
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking getrandom v0.2.14
[INFO] [stderr]     Checking is-terminal v0.4.12
[INFO] [stderr]     Checking num_cpus v1.16.0
[INFO] [stderr]     Checking supports-color v2.1.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking nanorand v0.7.0
[INFO] [stderr]     Checking console v0.15.8
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking core_affinity v0.8.1
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking regex-automata v0.4.6
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]    Compiling assert_cmd v2.0.14
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking shell-words v1.1.0
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking zeroize v1.7.0
[INFO] [stderr]     Checking nix v0.25.1
[INFO] [stderr]     Checking owo-colors v4.0.0
[INFO] [stderr]     Checking wait-timeout v0.2.0
[INFO] [stderr]     Checking itertools v0.12.1
[INFO] [stderr]     Checking tempfile v3.10.1
[INFO] [stderr]     Checking file-format v0.24.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking comma v1.0.0
[INFO] [stderr]     Checking libdeflater v0.12.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking regex v1.10.4
[INFO] [stderr]     Checking bstr v1.9.1
[INFO] [stderr]     Checking predicates v3.1.0
[INFO] [stderr]     Checking globset v0.4.14
[INFO] [stderr]    Compiling serde_derive v1.0.199
[INFO] [stderr]    Compiling thiserror-impl v1.0.59
[INFO] [stderr]    Compiling pin-project-internal v1.1.5
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]     Checking ignore v0.4.22
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking globwalk v0.9.1
[INFO] [stderr]     Checking assert_fs v1.1.1
[INFO] [stderr]     Checking pin-project v1.1.5
[INFO] [stderr]     Checking dialoguer v0.11.0
[INFO] [stderr]     Checking rexpect v0.5.0
[INFO] [stderr]     Checking flume v0.10.14
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking clap v4.5.4
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking flate2 v1.0.30
[INFO] [stderr]     Checking gzp v0.11.3
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking umi-transfer v1.5.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 14.45s
[INFO] running `Command { std: "docker" "inspect" "fab35bd7792555d1cc551653dcdb32cee20791ac0dc70d899550675bb04a960e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fab35bd7792555d1cc551653dcdb32cee20791ac0dc70d899550675bb04a960e", kill_on_drop: false }`
[INFO] [stdout] fab35bd7792555d1cc551653dcdb32cee20791ac0dc70d899550675bb04a960e
