[INFO] cloning repository https://github.com/Qw11111111111/BLASTn
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Qw11111111111/BLASTn" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FQw11111111111%2FBLASTn", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FQw11111111111%2FBLASTn'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 3663f080da6399efef1dbce9aa651da6576cadef
[INFO] checking Qw11111111111/BLASTn against master#3139ff09e9d07f7700f8d15ed25a231e29c43627 for pr-121848-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FQw11111111111%2FBLASTn" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Qw11111111111/BLASTn on toolchain 3139ff09e9d07f7700f8d15ed25a231e29c43627
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Qw11111111111/BLASTn
[INFO] finished tweaking git repo https://github.com/Qw11111111111/BLASTn
[INFO] tweaked toml for git repo https://github.com/Qw11111111111/BLASTn written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/Qw11111111111/BLASTn already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bio v2.0.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7a423df8171d51d3c393e3c210d1d103bbe74e64be0c6900b9b5515e1eb269f4
[INFO] running `Command { std: "docker" "start" "-a" "7a423df8171d51d3c393e3c210d1d103bbe74e64be0c6900b9b5515e1eb269f4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7a423df8171d51d3c393e3c210d1d103bbe74e64be0c6900b9b5515e1eb269f4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7a423df8171d51d3c393e3c210d1d103bbe74e64be0c6900b9b5515e1eb269f4", kill_on_drop: false }`
[INFO] [stdout] 7a423df8171d51d3c393e3c210d1d103bbe74e64be0c6900b9b5515e1eb269f4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a08ad873350d4767e5d5002900e8d756013c5e349ba04620b9b78ca8ca0975b3
[INFO] running `Command { std: "docker" "start" "-a" "a08ad873350d4767e5d5002900e8d756013c5e349ba04620b9b78ca8ca0975b3", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling serde v1.0.204
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling syn v2.0.70
[INFO] [stderr]     Checking bytemuck v1.16.1
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]     Checking safe_arch v0.7.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking wide v0.7.25
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]     Checking regex-syntax v0.8.4
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling thiserror v1.0.61
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking anstyle-parse v0.2.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking colorchoice v1.0.1
[INFO] [stderr]     Checking anstyle-query v1.1.0
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.0
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]     Checking anstyle v1.0.7
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking anstream v0.6.14
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking clap_lex v0.7.1
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking clap_builder v4.5.9
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking regex-automata v0.4.7
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v4.2.1
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking regex v1.10.5
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling serde_derive v1.0.204
[INFO] [stderr]    Compiling thiserror-impl v1.0.61
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling clap_derive v4.5.8
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking clap v4.5.9
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.10.0
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v2.0.0
[INFO] [stderr]     Checking blast v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 24.91s
[INFO] running `Command { std: "docker" "inspect" "a08ad873350d4767e5d5002900e8d756013c5e349ba04620b9b78ca8ca0975b3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a08ad873350d4767e5d5002900e8d756013c5e349ba04620b9b78ca8ca0975b3", kill_on_drop: false }`
[INFO] [stdout] a08ad873350d4767e5d5002900e8d756013c5e349ba04620b9b78ca8ca0975b3
[INFO] checking Qw11111111111/BLASTn against try#a2cff3b7a9661c90ec0d581d3f3a69bb97c11138 for pr-121848-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FQw11111111111%2FBLASTn" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Qw11111111111/BLASTn on toolchain a2cff3b7a9661c90ec0d581d3f3a69bb97c11138
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Qw11111111111/BLASTn
[INFO] finished tweaking git repo https://github.com/Qw11111111111/BLASTn
[INFO] tweaked toml for git repo https://github.com/Qw11111111111/BLASTn written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/Qw11111111111/BLASTn already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 88eb5338fd0ae86e3c247b663275eb5fac101f58e08de75b90473c0ab93774c4
[INFO] running `Command { std: "docker" "start" "-a" "88eb5338fd0ae86e3c247b663275eb5fac101f58e08de75b90473c0ab93774c4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "88eb5338fd0ae86e3c247b663275eb5fac101f58e08de75b90473c0ab93774c4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "88eb5338fd0ae86e3c247b663275eb5fac101f58e08de75b90473c0ab93774c4", kill_on_drop: false }`
[INFO] [stdout] 88eb5338fd0ae86e3c247b663275eb5fac101f58e08de75b90473c0ab93774c4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2e9ade8243176ed0a142e6566a8e344f8a683151e80b563f9722189c8d73ef54
[INFO] running `Command { std: "docker" "start" "-a" "2e9ade8243176ed0a142e6566a8e344f8a683151e80b563f9722189c8d73ef54", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling serde v1.0.204
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling syn v2.0.70
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking bytemuck v1.16.1
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]     Checking safe_arch v0.7.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking wide v0.7.25
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling thiserror v1.0.61
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking regex-syntax v0.8.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking anstyle-parse v0.2.4
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking anstyle v1.0.7
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.0
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]     Checking anstyle-query v1.1.0
[INFO] [stderr]     Checking colorchoice v1.0.1
[INFO] [stderr]     Checking anstream v0.6.14
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking clap_lex v0.7.1
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking regex-automata v0.4.7
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking clap_builder v4.5.9
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking ordered-float v4.2.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking regex v1.10.5
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling serde_derive v1.0.204
[INFO] [stderr]    Compiling thiserror-impl v1.0.61
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling clap_derive v4.5.8
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking clap v4.5.9
[INFO] [stderr]     Checking multimap v0.10.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking csv v1.3.0
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "2e9ade8243176ed0a142e6566a8e344f8a683151e80b563f9722189c8d73ef54", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2e9ade8243176ed0a142e6566a8e344f8a683151e80b563f9722189c8d73ef54", kill_on_drop: false }`
[INFO] [stdout] 2e9ade8243176ed0a142e6566a8e344f8a683151e80b563f9722189c8d73ef54
