[INFO] cloning repository https://github.com/wtzhang23/bamgen
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wtzhang23/bamgen" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwtzhang23%2Fbamgen", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwtzhang23%2Fbamgen'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 3d59832e20c0d9c88e0ea1a9b5a2cc5edb044927
[INFO] checking wtzhang23/bamgen against master#3139ff09e9d07f7700f8d15ed25a231e29c43627 for pr-121848-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwtzhang23%2Fbamgen" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/wtzhang23/bamgen on toolchain 3139ff09e9d07f7700f8d15ed25a231e29c43627
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/wtzhang23/bamgen
[INFO] finished tweaking git repo https://github.com/wtzhang23/bamgen
[INFO] tweaked toml for git repo https://github.com/wtzhang23/bamgen written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/wtzhang23/bamgen already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3139ff09e9d07f7700f8d15ed25a231e29c43627" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[ERROR] this task or one of its parent failed!
[ERROR] no output for 300 seconds
[ERROR] note: run with `RUST_BACKTRACE=1` to display a backtrace.
[INFO] checking wtzhang23/bamgen against try#a2cff3b7a9661c90ec0d581d3f3a69bb97c11138 for pr-121848-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwtzhang23%2Fbamgen" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/wtzhang23/bamgen on toolchain a2cff3b7a9661c90ec0d581d3f3a69bb97c11138
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/wtzhang23/bamgen
[INFO] finished tweaking git repo https://github.com/wtzhang23/bamgen
[INFO] tweaked toml for git repo https://github.com/wtzhang23/bamgen written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/wtzhang23/bamgen already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded serde v1.0.116
[INFO] [stderr]   Downloaded matches v0.1.8
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded version_check v0.9.2
[INFO] [stderr]   Downloaded unicode-width v0.1.8
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded memchr v2.3.3
[INFO] [stderr]   Downloaded clap_derive v3.0.0-beta.2
[INFO] [stderr]   Downloaded hermit-abi v0.1.16
[INFO] [stderr]   Downloaded unicode-segmentation v1.6.0
[INFO] [stderr]   Downloaded heck v0.3.1
[INFO] [stderr]   Downloaded unicode-normalization v0.1.13
[INFO] [stderr]   Downloaded url v2.1.1
[INFO] [stderr]   Downloaded rust-htslib v0.32.0
[INFO] [stderr]   Downloaded syn v1.0.42
[INFO] [stderr]   Downloaded clap v3.0.0-beta.2
[INFO] [stderr]   Downloaded aho-corasick v0.7.13
[INFO] [stderr]   Downloaded hashbrown v0.9.1
[INFO] [stderr]   Downloaded cc v1.0.60
[INFO] [stderr]   Downloaded regex v1.3.9
[INFO] [stderr]   Downloaded idna v0.2.0
[INFO] [stderr]   Downloaded openssl-sys v0.9.58
[INFO] [stderr]   Downloaded indexmap v1.6.0
[INFO] [stderr]   Downloaded regex-syntax v0.6.18
[INFO] [stderr]   Downloaded textwrap v0.12.1
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded pkg-config v0.3.18
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded thiserror-impl v1.0.20
[INFO] [stderr]   Downloaded tinyvec v0.3.4
[INFO] [stderr]   Downloaded serde_derive v1.0.116
[INFO] [stderr]   Downloaded libc v0.2.79
[INFO] [stderr]   Downloaded bitflags v1.2.1
[INFO] [stderr]   Downloaded ron v0.6.2
[INFO] [stderr]   Downloaded derive-new v0.5.8
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded jobserver v0.1.21
[INFO] [stderr]   Downloaded bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]   Downloaded lzma-sys v0.1.16
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded quote v1.0.7
[INFO] [stderr]   Downloaded termcolor v1.1.0
[INFO] [stderr]   Downloaded getrandom v0.1.15
[INFO] [stderr]   Downloaded unicode-bidi v0.3.4
[INFO] [stderr]   Downloaded os_str_bytes v2.3.2
[INFO] [stderr]   Downloaded thiserror v1.0.20
[INFO] [stderr]   Downloaded libz-sys v1.1.2
[INFO] [stderr]   Downloaded hts-sys v1.10.3
[INFO] [stderr]   Downloaded curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]   Downloaded openssl-src v111.11.0+1.1.1h
[INFO] [stderr]   Downloaded vcpkg v0.2.10
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] cef697975d3a70f77b5666ab5b9e0446a6f4e9009b1fe7845f5944f39ced6748
[INFO] running `Command { std: "docker" "start" "-a" "cef697975d3a70f77b5666ab5b9e0446a6f4e9009b1fe7845f5944f39ced6748", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "cef697975d3a70f77b5666ab5b9e0446a6f4e9009b1fe7845f5944f39ced6748", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cef697975d3a70f77b5666ab5b9e0446a6f4e9009b1fe7845f5944f39ced6748", kill_on_drop: false }`
[INFO] [stdout] cef697975d3a70f77b5666ab5b9e0446a6f4e9009b1fe7845f5944f39ced6748
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+a2cff3b7a9661c90ec0d581d3f3a69bb97c11138" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c65b08d345e2465944e65b2e589342e042ef927cb3bd5be5b2a14b1a96e02f09
[INFO] running `Command { std: "docker" "start" "-a" "c65b08d345e2465944e65b2e589342e042ef927cb3bd5be5b2a14b1a96e02f09", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.79
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling syn v1.0.42
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling getrandom v0.1.15
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling serde v1.0.116
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]     Checking tinyvec v0.3.4
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]     Checking regex-syntax v0.6.18
[INFO] [stderr]     Checking hashbrown v0.9.1
[INFO] [stderr]     Checking unicode-normalization v0.1.13
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling indexmap v1.6.0
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking ppv-lite86 v0.2.9
[INFO] [stderr]     Checking aho-corasick v0.7.13
[INFO] [stderr]     Checking textwrap v0.12.1
[INFO] [stderr]     Checking base64 v0.12.3
[INFO] [stderr]     Checking termcolor v1.1.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking os_str_bytes v2.3.2
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling cc v1.0.60
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]    Compiling openssl-src v111.11.0+1.1.1h
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling hts-sys v1.10.3
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.2
[INFO] [stderr]     Checking thiserror v1.0.20
[INFO] [stderr]     Checking clap v3.0.0-beta.2
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking ron v0.6.2
[INFO] [stderr]     Checking rust-htslib v0.32.0
[INFO] [stderr]     Checking bamgen v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 16.95s
[INFO] running `Command { std: "docker" "inspect" "c65b08d345e2465944e65b2e589342e042ef927cb3bd5be5b2a14b1a96e02f09", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c65b08d345e2465944e65b2e589342e042ef927cb3bd5be5b2a14b1a96e02f09", kill_on_drop: false }`
[INFO] [stdout] c65b08d345e2465944e65b2e589342e042ef927cb3bd5be5b2a14b1a96e02f09
