[INFO] fetching crate openmm-sys 7.4.1...
[INFO] checking openmm-sys-7.4.1 against master#30f74ff0dc4d66debc8b50724c446f817e5f75f4 for pr-121848-1
[INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-5-tc1/source
[INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 30f74ff0dc4d66debc8b50724c446f817e5f75f4
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate openmm-sys 7.4.1
[INFO] finished tweaking crates.io crate openmm-sys 7.4.1
[INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded cmake v0.1.44
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 69514e3fcbdd86da090fa98443936e4d4e5df09459ff5776856187fa6abf1060
[INFO] running `Command { std: "docker" "start" "-a" "69514e3fcbdd86da090fa98443936e4d4e5df09459ff5776856187fa6abf1060", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "69514e3fcbdd86da090fa98443936e4d4e5df09459ff5776856187fa6abf1060", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "69514e3fcbdd86da090fa98443936e4d4e5df09459ff5776856187fa6abf1060", kill_on_drop: false }`
[INFO] [stdout] 69514e3fcbdd86da090fa98443936e4d4e5df09459ff5776856187fa6abf1060
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 90d5c6dff2340f7a93a715f4308ca9735b7521f2b504632fb951ae4f4d758e1f
[INFO] running `Command { std: "docker" "start" "-a" "90d5c6dff2340f7a93a715f4308ca9735b7521f2b504632fb951ae4f4d758e1f", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.0.59
[INFO] [stderr]    Compiling cmake v0.1.44
[INFO] [stderr]    Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir)
[INFO] [stderr] The following warnings were emitted during compilation:
[INFO] [stderr] 
[INFO] [stderr] warning: openmm-sys@7.4.1: [OpenMM-sys] Dynamically linking against the OpenMM library.
[INFO] [stderr] 
[INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-19b915e701087451/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library.
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/openmm-sys-0fd3f735f525d066/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-0fd3f735f525d066/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release"
[INFO] [stderr]   -- Found PythonInterp: /usr/bin/python3.10 (found version "3.10.12") 
[INFO] [stderr]   -- The C compiler identification is GNU 11.4.0
[INFO] [stderr]   -- The CXX compiler identification is GNU 11.4.0
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc - skipped
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ - skipped
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- Configuring incomplete, errors occurred!
[INFO] [stderr]   See also "/opt/rustwide/target/debug/build/openmm-sys-0fd3f735f525d066/out/build/CMakeFiles/CMakeOutput.log".
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   fatal: not a git repository (or any parent up to mount point /opt/rustwide)
[INFO] [stderr]   Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
[INFO] [stderr]   CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY):
[INFO] [stderr]     The OLD behavior for policy CMP0042 will be removed from a future version
[INFO] [stderr]     of CMake.
[INFO] [stderr] 
[INFO] [stderr]     The cmake-policies(7) manual explains that the OLD behaviors of all
[INFO] [stderr]     policies are deprecated and that a policy should be set to OLD only under
[INFO] [stderr]     specific short-term circumstances.  Projects should be ported to the NEW
[INFO] [stderr]     behavior and not rely on setting a policy to OLD.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Error at /usr/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
[INFO] [stderr]     Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
[INFO] [stderr]   Call Stack (most recent call first):
[INFO] [stderr]     /usr/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_MESSAGE)
[INFO] [stderr]     /usr/share/cmake-3.22/Modules/FindDoxygen.cmake:646 (find_package_handle_standard_args)
[INFO] [stderr]     wrappers/CMakeLists.txt:1 (find_package)
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.44/src/lib.rs:885:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55ce0a88d852 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h9ec11fc9f8e1e9e3
[INFO] [stderr]      1:     0x55ce0a8b27ec - core::fmt::write::h1591db653c658e71
[INFO] [stderr]      2:     0x55ce0a88af2f - std::io::Write::write_fmt::hfbffa468e7623aef
[INFO] [stderr]      3:     0x55ce0a88d624 - std::sys_common::backtrace::print::ha9520edf621a95dc
[INFO] [stderr]      4:     0x55ce0a88ecfb - std::panicking::default_hook::{{closure}}::h46e508c07ecf0cb0
[INFO] [stderr]      5:     0x55ce0a88ea53 - std::panicking::default_hook::h171667a6e5f66517
[INFO] [stderr]      6:     0x55ce0a88f19d - std::panicking::rust_panic_with_hook::hb748cf56d2d9af62
[INFO] [stderr]      7:     0x55ce0a88f072 - std::panicking::begin_panic_handler::{{closure}}::h1f68a14808274394
[INFO] [stderr]      8:     0x55ce0a88dd26 - std::sys_common::backtrace::__rust_end_short_backtrace::h36413da1fefb6b73
[INFO] [stderr]      9:     0x55ce0a88eda4 - rust_begin_unwind
[INFO] [stderr]     10:     0x55ce0a8211a5 - core::panicking::panic_fmt::hbebe585df2478a90
[INFO] [stderr]     11:     0x55ce0a8307d1 - cmake::fail::h4d2a5a336cb835de
[INFO] [stderr]     12:     0x55ce0a82fed6 - cmake::run::hce9916b6dd4ad94e
[INFO] [stderr]     13:     0x55ce0a82c33c - cmake::Config::build::hccd6da5ddfa6f7a4
[INFO] [stderr]     14:     0x55ce0a82723f - build_script_build::main::h3d11b58e3f0cb99a
[INFO] [stderr]     15:     0x55ce0a8222c3 - core::ops::function::FnOnce::call_once::h38a174146a19f9a3
[INFO] [stderr]     16:     0x55ce0a821876 - std::sys_common::backtrace::__rust_begin_short_backtrace::h691211598e6f6b7f
[INFO] [stderr]     17:     0x55ce0a821b59 - std::rt::lang_start::{{closure}}::hdbf149044faf7a91
[INFO] [stderr]     18:     0x55ce0a887093 - std::rt::lang_start_internal::hc3039611687c4867
[INFO] [stderr]     19:     0x55ce0a821b37 - std::rt::lang_start::h83d73b0ef910b882
[INFO] [stderr]     20:     0x55ce0a827775 - main
[INFO] [stderr]     21:     0x7fce86b58d90 - <unknown>
[INFO] [stderr]     22:     0x7fce86b58e40 - __libc_start_main
[INFO] [stderr]     23:     0x55ce0a821785 - _start
[INFO] [stderr]     24:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "90d5c6dff2340f7a93a715f4308ca9735b7521f2b504632fb951ae4f4d758e1f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "90d5c6dff2340f7a93a715f4308ca9735b7521f2b504632fb951ae4f4d758e1f", kill_on_drop: false }`
[INFO] [stdout] 90d5c6dff2340f7a93a715f4308ca9735b7521f2b504632fb951ae4f4d758e1f
