[INFO] fetching crate libradicl 0.6.0...
[INFO] checking libradicl-0.6.0 against master#30f74ff0dc4d66debc8b50724c446f817e5f75f4 for pr-121848-1
[INFO] extracting crate libradicl 0.6.0 into /workspace/builds/worker-3-tc1/source
[INFO] validating manifest of crates.io crate libradicl 0.6.0 on toolchain 30f74ff0dc4d66debc8b50724c446f817e5f75f4
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate libradicl 0.6.0
[INFO] finished tweaking crates.io crate libradicl 0.6.0
[INFO] tweaked toml for crates.io crate libradicl 0.6.0 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded hts-sys v2.1.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 29737ee093c7efcb885f2511db169339b05c5c5c66d168ce2cb1bb663da82d14
[INFO] running `Command { std: "docker" "start" "-a" "29737ee093c7efcb885f2511db169339b05c5c5c66d168ce2cb1bb663da82d14", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "29737ee093c7efcb885f2511db169339b05c5c5c66d168ce2cb1bb663da82d14", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "29737ee093c7efcb885f2511db169339b05c5c5c66d168ce2cb1bb663da82d14", kill_on_drop: false }`
[INFO] [stdout] 29737ee093c7efcb885f2511db169339b05c5c5c66d168ce2cb1bb663da82d14
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8287dfd9322decc1ebd21bab75075d59486f51a1ce9181d5b0c28741d365dedf
[INFO] running `Command { std: "docker" "start" "-a" "8287dfd9322decc1ebd21bab75075d59486f51a1ce9181d5b0c28741d365dedf", kill_on_drop: false }`
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling rustversion v1.0.14
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling num-bigint v0.4.4
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling syn v2.0.57
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]     Checking url v2.5.0
[INFO] [stderr]     Checking getrandom v0.2.12
[INFO] [stderr]     Checking zerocopy v0.7.32
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking scroll v0.11.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling jobserver v0.1.28
[INFO] [stderr]    Compiling cc v1.0.90
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]     Checking num-iter v0.1.44
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]    Compiling libz-sys v1.1.16
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling thiserror-impl v1.0.58
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling serde_derive v1.0.197
[INFO] [stderr]     Checking num v0.4.1
[INFO] [stderr]     Checking thiserror v1.0.58
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking serde v1.0.197
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]     Checking libradicl v0.6.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: the item `Vec` is imported redundantly
[INFO] [stdout]   --> src/lib.rs:29:5
[INFO] [stdout]    |
[INFO] [stdout] 29 | use std::vec::Vec;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]   --> /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/prelude/mod.rs:125:13
[INFO] [stdout]    |
[INFO] [stdout]    = note: the item `Vec` is already defined here
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `bio_types` is imported redundantly
[INFO] [stdout]   --> src/schema.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use bio_types;
[INFO] [stdout]    |     ^^^^^^^^^ the item `bio_types` is already defined by prelude
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `needletail`
[INFO] [stdout]    --> src/lib.rs:711:17
[INFO] [stdout]     |
[INFO] [stdout] 711 |                 needletail::bitkmer::BitNuclKmer::new(&b[..], b.len() as u8, false).next()
[INFO] [stdout]     |                 ^^^^^^^^^^ use of undeclared crate or module `needletail`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `needletail`
[INFO] [stdout]    --> src/lib.rs:719:17
[INFO] [stdout]     |
[INFO] [stdout] 719 |                 needletail::bitkmer::BitNuclKmer::new(&b[..], b.len() as u8, false).next()
[INFO] [stdout]     |                 ^^^^^^^^^^ use of undeclared crate or module `needletail`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `needletail`
[INFO] [stdout]    --> src/lib.rs:730:13
[INFO] [stdout]     |
[INFO] [stdout] 730 |             needletail::bitkmer::BitNuclKmer::new(&x[..], x.len() as u8, false).next()
[INFO] [stdout]     |             ^^^^^^^^^^ use of undeclared crate or module `needletail`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared crate or module `needletail`
[INFO] [stdout]    --> src/lib.rs:736:13
[INFO] [stdout]     |
[INFO] [stdout] 736 |             needletail::bitkmer::BitNuclKmer::new(&x[..], x.len() as u8, false).next()
[INFO] [stdout]     |             ^^^^^^^^^^ use of undeclared crate or module `needletail`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `Vec` is imported redundantly
[INFO] [stdout]   --> src/lib.rs:29:5
[INFO] [stdout]    |
[INFO] [stdout] 29 | use std::vec::Vec;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]   --> /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/prelude/mod.rs:125:13
[INFO] [stdout]    |
[INFO] [stdout]    = note: the item `Vec` is already defined here
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `bio_types` is imported redundantly
[INFO] [stdout]   --> src/schema.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use bio_types;
[INFO] [stdout]    |     ^^^^^^^^^ the item `bio_types` is already defined by prelude
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 4 previous errors; 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `libradicl` (lib test) due to 5 previous errors; 2 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "8287dfd9322decc1ebd21bab75075d59486f51a1ce9181d5b0c28741d365dedf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8287dfd9322decc1ebd21bab75075d59486f51a1ce9181d5b0c28741d365dedf", kill_on_drop: false }`
[INFO] [stdout] 8287dfd9322decc1ebd21bab75075d59486f51a1ce9181d5b0c28741d365dedf
