[INFO] fetching crate chemfiles-sys 0.10.40...
[INFO] checking chemfiles-sys-0.10.40 against master#30f74ff0dc4d66debc8b50724c446f817e5f75f4 for pr-121848-1
[INFO] extracting crate chemfiles-sys 0.10.40 into /workspace/builds/worker-0-tc1/source
[INFO] validating manifest of crates.io crate chemfiles-sys 0.10.40 on toolchain 30f74ff0dc4d66debc8b50724c446f817e5f75f4
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate chemfiles-sys 0.10.40
[INFO] finished tweaking crates.io crate chemfiles-sys 0.10.40
[INFO] tweaked toml for crates.io crate chemfiles-sys 0.10.40 written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0cd8d15ec48e0c3c6fceca1b875cd522c16a007760e3c8b00d4f3fd339ce1a17
[INFO] running `Command { std: "docker" "start" "-a" "0cd8d15ec48e0c3c6fceca1b875cd522c16a007760e3c8b00d4f3fd339ce1a17", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0cd8d15ec48e0c3c6fceca1b875cd522c16a007760e3c8b00d4f3fd339ce1a17", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0cd8d15ec48e0c3c6fceca1b875cd522c16a007760e3c8b00d4f3fd339ce1a17", kill_on_drop: false }`
[INFO] [stdout] 0cd8d15ec48e0c3c6fceca1b875cd522c16a007760e3c8b00d4f3fd339ce1a17
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+30f74ff0dc4d66debc8b50724c446f817e5f75f4" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3fd0347b9cb804307f93fc2fe02f428233a0e7274485acd5803d3772f584c7fd
[INFO] running `Command { std: "docker" "start" "-a" "3fd0347b9cb804307f93fc2fe02f428233a0e7274485acd5803d3772f584c7fd", kill_on_drop: false }`
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling chemfiles-sys v0.10.40 (/opt/rustwide/workdir)
[INFO] [stderr] The following warnings were emitted during compilation:
[INFO] [stderr] 
[INFO] [stderr] warning: chemfiles-sys@0.10.40: Compiler version doesn't include clang or GCC: "cc" "--version"
[INFO] [stderr] warning: chemfiles-sys@0.10.40: Compiler version doesn't include clang or GCC: "c++" "--version"
[INFO] [stderr] 
[INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.40 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-b016c75e41717085/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_GENERATOR = None
[INFO] [stderr]   cargo:warning=Compiler version doesn't include clang or GCC: "cc" "--version"
[INFO] [stderr]   cargo:warning=Compiler version doesn't include clang or GCC: "c++" "--version"
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE = None
[INFO] [stderr]   CMAKE = None
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-4f4608ad2cc33a2f/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/." "-DCHEMFILES_VERSION=0.10.4" "-DCHFL_RUST_PREBUILT_TARGET=x86_64-linux-gnu" "-DCHFL_RUST_PREBUILT_SHA256=2ac97eba5b79f8051cd86184e00379271c72e85d2bbcbcd50626b0ec602a1978" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-4f4608ad2cc33a2f/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The CXX compiler identification is GNU 11.4.0
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ - skipped
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- trying to download https://github.com/chemfiles/chemfiles-prebuilt/releases/download/v0.10.4/chemfiles-static.v0.10.4.x86_64-linux-gnu.tar.gz
[INFO] [stderr]   -- failed to download prebuilt chemfiles, building from sources
[INFO] [stderr]   -- The C compiler identification is GNU 11.4.0
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc - skipped
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Unpacking zlib sources
[INFO] [stderr]   -- Unpacking lzma sources
[INFO] [stderr]   -- Unpacking bzip2 sources
[INFO] [stderr]   -- Unpacking fmt sources
[INFO] [stderr]   -- Unpacking toml11 sources
[INFO] [stderr]   -- Unpacking tng sources
[INFO] [stderr]   -- Unpacking molfiles sources
[INFO] [stderr]   -- Unpacking mmtf-cpp sources
[INFO] [stderr]   -- Unpacking pugixml sources
[INFO] [stderr]   -- Unpacking gemmi sources
[INFO] [stderr]   -- Configuring done
[INFO] [stderr]   -- Generating done
[INFO] [stderr]   -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-4f4608ad2cc33a2f/out/build
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-4f4608ad2cc33a2f/out/build" && MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "cmake" "--build" "." "--target" "install" "--config" "Debug"
[INFO] [stderr]   [  1%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o
[INFO] [stderr]   [  2%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o
[INFO] [stderr]   [  4%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/huffman.c.o
[INFO] [stderr]   [  4%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/moldenplugin.c.o
[INFO] [stderr]   [  4%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/os.cc.o
[INFO] [stderr]   [  4%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/compress.c.o
[INFO] [stderr]   [  5%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/adler32.c.o
[INFO] [stderr]   [  5%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o
[INFO] [stderr]   [  6%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o
[INFO] [stderr]   [  7%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwt.c.o
[INFO] [stderr]   [  8%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/crctable.c.o
[INFO] [stderr]   [  8%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o
[INFO] [stderr]   [  9%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/randtable.c.o
[INFO] [stderr]   [ 10%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/check.c.o
[INFO] [stderr]   [ 10%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/blocksort.c.o
[INFO] [stderr]   [ 10%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/psfplugin.c.o
[INFO] [stderr]   [ 10%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/compress.c.o
[INFO] [stderr]   [ 11%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/crc32.c.o
[INFO] [stderr]   [ 12%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/decompress.c.o
[INFO] [stderr]   [ 12%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/bzlib.c.o
[INFO] [stderr]   [ 12%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_fast.c.o
[INFO] [stderr]   [ 12%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/deflate.c.o
[INFO] [stderr]   [ 12%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/coder.c.o
[INFO] [stderr]   [ 13%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_table.c.o
[INFO] [stderr]   [ 14%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzclose.c.o
[INFO] [stderr]   [ 15%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzlib.c.o
[INFO] [stderr]   [ 15%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o
[INFO] [stderr]   [ 16%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o
[INFO] [stderr]   [ 16%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc64_fast.c.o
[INFO] [stderr]   [ 17%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzwrite.c.o
[INFO] [stderr]   [ 17%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzread.c.o
[INFO] [stderr]   [ 18%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/dict.c.o
[INFO] [stderr]   [ 18%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/File.cpp.o
[INFO] [stderr]   [ 18%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inflate.c.o
[INFO] [stderr]   [ 18%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/fixpoint.c.o
[INFO] [stderr]   [ 18%] Built target bzip2
[INFO] [stderr]   [ 19%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffman.c.o
[INFO] [stderr]   [ 20%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/infback.c.o
[INFO] [stderr]   [ 21%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffmem.c.o
[INFO] [stderr]   [ 22%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc64_table.c.o
[INFO] [stderr]   [ 22%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/lz77.c.o
[INFO] [stderr]   [ 23%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/merge_sort.c.o
[INFO] [stderr]   [ 23%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/mtf.c.o
[INFO] [stderr]   [ 24%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/sha256.c.o
[INFO] [stderr]   [ 24%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inftrees.c.o
[INFO] [stderr]   [ 25%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inffast.c.o
[INFO] [stderr]   [ 26%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/rle.c.o
[INFO] [stderr]   [ 26%] Built target molfiles
[INFO] [stderr]   [ 26%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/tng_compress.c.o
[INFO] [stderr]   [ 26%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/alone_decoder.c.o
[INFO] [stderr]   [ 26%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/trees.c.o
[INFO] [stderr]   [ 27%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/vals16.c.o
[INFO] [stderr]   [ 28%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/alone_encoder.c.o
[INFO] [stderr]   [ 29%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/uncompr.c.o
[INFO] [stderr]   [ 30%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/zutil.c.o
[INFO] [stderr]   [ 30%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/warnmalloc.c.o
[INFO] [stderr]   [ 31%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Format.cpp.o
[INFO] [stderr]   [ 32%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/widemuldiv.c.o
[INFO] [stderr]   [ 32%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/auto_decoder.c.o
[INFO] [stderr]   [ 32%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o
[INFO] [stderr]   [ 33%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_buffer_decoder.c.o
[INFO] [stderr]   [ 34%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc2.c.o
[INFO] [stderr]   [ 34%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_buffer_encoder.c.o
[INFO] [stderr]   [ 34%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc3.c.o
[INFO] [stderr]   [ 35%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_decoder.c.o
[INFO] [stderr]   [ 36%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatMetadata.cpp.o
[INFO] [stderr]   [ 36%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_encoder.c.o
[INFO] [stderr]   [ 36%] Built target zlib
[INFO] [stderr]   [ 37%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_header_decoder.c.o
[INFO] [stderr]   [ 38%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/lib/tng_io.c.o
[INFO] [stderr]   [ 38%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Frame.cpp.o
[INFO] [stderr]   [ 39%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_header_encoder.c.o
[INFO] [stderr]   [ 39%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/lib/md5.c.o
[INFO] [stderr]   [ 39%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_util.c.o
[INFO] [stderr]   [ 40%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/common.c.o
[INFO] [stderr]   [ 40%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_buffer_encoder.c.o
[INFO] [stderr]   [ 41%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o
[INFO] [stderr]   [ 41%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_encoder.c.o
[INFO] [stderr]   [ 42%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_decoder_memusage.c.o
[INFO] [stderr]   [ 43%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_encoder_memusage.c.o
[INFO] [stderr]   [ 43%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_preset.c.o
[INFO] [stderr]   [ 44%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_buffer_decoder.c.o
[INFO] [stderr]   [ 45%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_buffer_encoder.c.o
[INFO] [stderr]   [ 45%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_common.c.o
[INFO] [stderr]   [ 46%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Residue.cpp.o
[INFO] [stderr]   [ 46%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o
[INFO] [stderr]   [ 47%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Topology.cpp.o
[INFO] [stderr]   [ 48%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_decoder.c.o
[INFO] [stderr]   [ 48%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_encoder.c.o
[INFO] [stderr]   [ 49%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_flags_decoder.c.o
[INFO] [stderr]   [ 49%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_flags_encoder.c.o
[INFO] [stderr]   [ 50%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index.c.o
[INFO] [stderr]   [ 50%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_decoder.c.o
[INFO] [stderr]   [ 51%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_encoder.c.o
[INFO] [stderr]   [ 52%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_hash.c.o
[INFO] [stderr]   [ 52%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_buffer_decoder.c.o
[INFO] [stderr]   [ 53%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_buffer_encoder.c.o
[INFO] [stderr]   [ 53%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_decoder.c.o
[INFO] [stderr]   [ 53%] Built target tng_io
[INFO] [stderr]   [ 54%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_encoder.c.o
[INFO] [stderr]   [ 54%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_common.c.o
[INFO] [stderr]   [ 55%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_decoder.c.o
[INFO] [stderr]   [ 55%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_encoder.c.o
[INFO] [stderr]   [ 56%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_decoder.c.o
[INFO] [stderr]   [ 57%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_encoder.c.o
[INFO] [stderr]   [ 57%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_size.c.o
[INFO] [stderr]   [ 58%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_common.c.o
[INFO] [stderr]   [ 58%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_decoder.c.o
[INFO] [stderr]   [ 59%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_encoder.c.o
[INFO] [stderr]   [ 59%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_decoder.c.o
[INFO] [stderr]   [ 60%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_encoder.c.o
[INFO] [stderr]   [ 60%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_encoder_mf.c.o
[INFO] [stderr]   [ 60%] Built target pugixml
[INFO] [stderr]   [ 61%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma2_decoder.c.o
[INFO] [stderr]   [ 62%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/fastpos_table.c.o
[INFO] [stderr]   [ 62%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma2_encoder.c.o
[INFO] [stderr]   [ 62%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder.c.o
[INFO] [stderr]   [ 63%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_decoder.c.o
[INFO] [stderr]   [ 64%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_optimum_fast.c.o
[INFO] [stderr]   [ 64%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_optimum_normal.c.o
[INFO] [stderr]   [ 65%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_presets.c.o
[INFO] [stderr]   [ 65%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/rangecoder/price_table.c.o
[INFO] [stderr]   [ 66%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/arm.c.o
[INFO] [stderr]   [ 67%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/armthumb.c.o
[INFO] [stderr]   [ 67%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/ia64.c.o
[INFO] [stderr]   [ 67%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_coder.c.o
[INFO] [stderr]   [ 68%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/powerpc.c.o
[INFO] [stderr]   [ 69%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_decoder.c.o
[INFO] [stderr]   [ 69%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_encoder.c.o
[INFO] [stderr]   [ 70%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/sparc.c.o
[INFO] [stderr]   [ 70%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/x86.c.o
[INFO] [stderr]   [ 70%] Built target lzma
[INFO] [stderr]   [ 70%] Built target fmt
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning (dev) at chemfiles/CMakeLists.txt:35 (option):
[INFO] [stderr]     Policy CMP0077 is not set: option() honors normal variables.  Run "cmake
[INFO] [stderr]     --help-policy CMP0077" for policy details.  Use the cmake_policy command to
[INFO] [stderr]     set the policy and suppress this warning.
[INFO] [stderr] 
[INFO] [stderr]     For compatibility with older versions of CMake, option is clearing the
[INFO] [stderr]     normal variable 'BUILD_SHARED_LIBS'.
[INFO] [stderr]   This warning is for project developers.  Use -Wno-dev to suppress it.
[INFO] [stderr] 
[INFO] [stderr]   CMake Warning:
[INFO] [stderr]     Manually-specified variables were not used by the project:
[INFO] [stderr] 
[INFO] [stderr]       CMAKE_ASM_COMPILER
[INFO] [stderr]       CMAKE_ASM_FLAGS
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   c++: fatal error: Killed signal terminated program cc1plus
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:90: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1
[INFO] [stderr]   gmake[2]: *** Waiting for unfinished jobs....
[INFO] [stderr]   gmake[1]: *** [CMakeFiles/Makefile2:214: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2
[INFO] [stderr]   gmake: *** [Makefile:136: all] Error 2
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.50/src/lib.rs:1098:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 2
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x56311b2c8662 - std::backtrace_rs::backtrace::libunwind::trace::hd67e08e71d64f12a
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/../../backtrace/src/backtrace/libunwind.rs:105:5
[INFO] [stderr]      1:     0x56311b2c8662 - std::backtrace_rs::backtrace::trace_unsynchronized::h1b6e03ae921b7ccc
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x56311b2c8662 - std::sys_common::backtrace::_print_fmt::h104284235ec6c37d
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/sys_common/backtrace.rs:68:5
[INFO] [stderr]      3:     0x56311b2c8662 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h9ec11fc9f8e1e9e3
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/sys_common/backtrace.rs:44:22
[INFO] [stderr]      4:     0x56311b2ecadc - core::fmt::rt::Argument::fmt::hba6bb69d73dbc69a
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/core/src/fmt/rt.rs:142:9
[INFO] [stderr]      5:     0x56311b2ecadc - core::fmt::write::h1591db653c658e71
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/core/src/fmt/mod.rs:1153:17
[INFO] [stderr]      6:     0x56311b2c5b9f - std::io::Write::write_fmt::hfbffa468e7623aef
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/io/mod.rs:1843:15
[INFO] [stderr]      7:     0x56311b2c8434 - std::sys_common::backtrace::_print::h00abfdf27a732373
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/sys_common/backtrace.rs:47:5
[INFO] [stderr]      8:     0x56311b2c8434 - std::sys_common::backtrace::print::ha9520edf621a95dc
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/sys_common/backtrace.rs:34:9
[INFO] [stderr]      9:     0x56311b2c9b0b - std::panicking::default_hook::{{closure}}::h46e508c07ecf0cb0
[INFO] [stderr]     10:     0x56311b2c9863 - std::panicking::default_hook::h171667a6e5f66517
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/panicking.rs:292:9
[INFO] [stderr]     11:     0x56311b2c9fad - std::panicking::rust_panic_with_hook::hb748cf56d2d9af62
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/panicking.rs:779:13
[INFO] [stderr]     12:     0x56311b2c9e82 - std::panicking::begin_panic_handler::{{closure}}::h1f68a14808274394
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/panicking.rs:657:13
[INFO] [stderr]     13:     0x56311b2c8b36 - std::sys_common::backtrace::__rust_end_short_backtrace::h36413da1fefb6b73
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/sys_common/backtrace.rs:171:18
[INFO] [stderr]     14:     0x56311b2c9bb4 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/panicking.rs:645:5
[INFO] [stderr]     15:     0x56311b23d115 - core::panicking::panic_fmt::hbebe585df2478a90
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/core/src/panicking.rs:72:14
[INFO] [stderr]     16:     0x56311b252dd1 - cmake::fail::h51ef41dfe64f7a43
[INFO] [stderr]     17:     0x56311b252566 - cmake::run::h0594592f755b910e
[INFO] [stderr]     18:     0x56311b24eda2 - cmake::Config::build::hed976333cb60101c
[INFO] [stderr]     19:     0x56311b240515 - build_script_build::build_chemfiles::h328fe296008f9c17
[INFO] [stderr]     20:     0x56311b23f913 - build_script_build::main::h50372fbc58597bc3
[INFO] [stderr]     21:     0x56311b23dc13 - core::ops::function::FnOnce::call_once::h493d389d6bba9e3b
[INFO] [stderr]     22:     0x56311b23d806 - std::sys_common::backtrace::__rust_begin_short_backtrace::h31a8d7cd59df7ab6
[INFO] [stderr]     23:     0x56311b23d919 - std::rt::lang_start::{{closure}}::hc316ad59f7036acf
[INFO] [stderr]     24:     0x56311b2c1e23 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hc0dea7e08dfe9d58
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/core/src/ops/function.rs:284:13
[INFO] [stderr]     25:     0x56311b2c1e23 - std::panicking::try::do_call::h9e7e3ff0019eca48
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/panicking.rs:552:40
[INFO] [stderr]     26:     0x56311b2c1e23 - std::panicking::try::h4177c8693e12080e
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/panicking.rs:516:19
[INFO] [stderr]     27:     0x56311b2c1e23 - std::panic::catch_unwind::h30c59f0ccf8c5da4
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/panic.rs:146:14
[INFO] [stderr]     28:     0x56311b2c1e23 - std::rt::lang_start_internal::{{closure}}::hc959f2313e587664
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/rt.rs:148:48
[INFO] [stderr]     29:     0x56311b2c1e23 - std::panicking::try::do_call::h52365037f05374a7
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/panicking.rs:552:40
[INFO] [stderr]     30:     0x56311b2c1e23 - std::panicking::try::h7da172df60cd6061
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/panicking.rs:516:19
[INFO] [stderr]     31:     0x56311b2c1e23 - std::panic::catch_unwind::h88fa8b63d34be7de
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/panic.rs:146:14
[INFO] [stderr]     32:     0x56311b2c1e23 - std::rt::lang_start_internal::hc3039611687c4867
[INFO] [stderr]                                  at /rustc/30f74ff0dc4d66debc8b50724c446f817e5f75f4/library/std/src/rt.rs:148:20
[INFO] [stderr]     33:     0x56311b23d8f7 - std::rt::lang_start::hf56928793728cec8
[INFO] [stderr]     34:     0x56311b241035 - main
[INFO] [stderr]     35:     0x7f4f939ded90 - <unknown>
[INFO] [stderr]     36:     0x7f4f939dee40 - __libc_start_main
[INFO] [stderr]     37:     0x56311b23d735 - _start
[INFO] [stderr]     38:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "3fd0347b9cb804307f93fc2fe02f428233a0e7274485acd5803d3772f584c7fd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3fd0347b9cb804307f93fc2fe02f428233a0e7274485acd5803d3772f584c7fd", kill_on_drop: false }`
[INFO] [stdout] 3fd0347b9cb804307f93fc2fe02f428233a0e7274485acd5803d3772f584c7fd
