[INFO] cloning repository https://github.com/redst4r/bustools_cli-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/redst4r/bustools_cli-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fredst4r%2Fbustools_cli-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fredst4r%2Fbustools_cli-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7fdf1b7a0009a3dc197d6d7ce5578bfbd206caf0
[INFO] documenting redst4r/bustools_cli-rs against master#ef324565d071c6d7e2477a195648549e33d6a465 for pr-121659-bump-pulldown-cmark
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fredst4r%2Fbustools_cli-rs" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/redst4r/bustools_cli-rs on toolchain ef324565d071c6d7e2477a195648549e33d6a465
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/redst4r/bustools_cli-rs
[INFO] finished tweaking git repo https://github.com/redst4r/bustools_cli-rs
[INFO] tweaked toml for git repo https://github.com/redst4r/bustools_cli-rs written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/redst4r/bustools_cli-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[ERROR] this task or one of its parent failed!
[ERROR] no output for 300 seconds
[ERROR] note: run with `RUST_BACKTRACE=1` to display a backtrace.
[INFO] documenting redst4r/bustools_cli-rs against try#223112bf1ca31911a6475910c77b36bfa127d5f8 for pr-121659-bump-pulldown-cmark
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fredst4r%2Fbustools_cli-rs" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/redst4r/bustools_cli-rs on toolchain 223112bf1ca31911a6475910c77b36bfa127d5f8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/redst4r/bustools_cli-rs
[INFO] finished tweaking git repo https://github.com/redst4r/bustools_cli-rs
[INFO] tweaked toml for git repo https://github.com/redst4r/bustools_cli-rs written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/redst4r/bustools_cli-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] documenting redst4r/bustools_cli-rs against try#223112bf1ca31911a6475910c77b36bfa127d5f8 for pr-121659-bump-pulldown-cmark
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fredst4r%2Fbustools_cli-rs" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/redst4r/bustools_cli-rs on toolchain 223112bf1ca31911a6475910c77b36bfa127d5f8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/redst4r/bustools_cli-rs
[INFO] finished tweaking git repo https://github.com/redst4r/bustools_cli-rs
[INFO] tweaked toml for git repo https://github.com/redst4r/bustools_cli-rs written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/redst4r/bustools_cli-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded special v0.10.3
[INFO] [stderr]   Downloaded bustools v0.10.0
[INFO] [stderr]   Downloaded newpfd v0.7.0
[INFO] [stderr]   Downloaded probability v0.20.3
[INFO] [stderr]   Downloaded bktree v1.0.1
[INFO] [stderr]   Downloaded fastfibonacci v0.3.0
[INFO] [stderr]   Downloaded sprs v0.11.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 007ac270c10adb388e0ba5330094e28c718ce974d39ab9edc952a309f037d34f
[INFO] running `Command { std: "docker" "start" "-a" "007ac270c10adb388e0ba5330094e28c718ce974d39ab9edc952a309f037d34f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "007ac270c10adb388e0ba5330094e28c718ce974d39ab9edc952a309f037d34f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "007ac270c10adb388e0ba5330094e28c718ce974d39ab9edc952a309f037d34f", kill_on_drop: false }`
[INFO] [stdout] 007ac270c10adb388e0ba5330094e28c718ce974d39ab9edc952a309f037d34f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d26ec93bc375b0e982b63921be597d4997a42dbbce209403fd3cb2cce978977f
[INFO] running `Command { std: "docker" "start" "-a" "d26ec93bc375b0e982b63921be597d4997a42dbbce209403fd3cb2cce978977f", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling num-traits v0.2.17
[INFO] [stderr]    Compiling libc v0.2.151
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling proc-macro2 v1.0.74
[INFO] [stderr]    Compiling num-bigint v0.4.4
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.17
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling num-iter v0.1.43
[INFO] [stderr]    Compiling crossbeam-utils v0.8.18
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]     Checking bytemuck v1.14.0
[INFO] [stderr]    Compiling radium v0.7.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]    Compiling quote v1.0.35
[INFO] [stderr]    Compiling syn v2.0.46
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]     Checking tap v1.0.1
[INFO] [stderr]     Checking getrandom v0.2.11
[INFO] [stderr]     Checking wide v0.7.13
[INFO] [stderr]     Checking wyz v0.5.1
[INFO] [stderr]     Checking rand_core v0.6.4
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[INFO] [stderr]    Compiling rayon-core v1.12.0
[INFO] [stderr]     Checking utf8parse v0.2.1
[INFO] [stderr]    Compiling rustix v0.38.28
[INFO] [stderr]     Checking funty v2.0.0
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling portable-atomic v1.6.0
[INFO] [stderr]    Compiling serde v1.0.194
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking anstyle-parse v0.2.3
[INFO] [stderr]     Checking bitvec v1.0.1
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[INFO] [stderr]     Checking itertools v0.12.0
[INFO] [stderr]     Checking unicode-width v0.1.11
[INFO] [stderr]     Checking linux-raw-sys v0.4.12
[INFO] [stderr]     Checking bitflags v2.4.1
[INFO] [stderr]     Checking num v0.4.1
[INFO] [stderr]     Checking once_cell v1.19.0
[INFO] [stderr]     Checking anstyle v1.0.4
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[INFO] [stderr]     Checking console v0.15.7
[INFO] [stderr]     Checking anstream v0.6.5
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking fastfibonacci v0.3.0
[INFO] [stderr]     Checking special v0.10.3
[INFO] [stderr]     Checking clap_lex v0.6.0
[INFO] [stderr]     Checking random v0.13.2
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking number_prefix v0.4.0
[INFO] [stderr]     Checking fastrand v2.0.1
[INFO] [stderr]     Checking indicatif v0.17.7
[INFO] [stderr]     Checking clap_builder v4.4.12
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]     Checking probability v0.20.3
[INFO] [stderr]     Checking newpfd v0.7.0
[INFO] [stderr]     Checking rayon v1.8.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking tempfile v3.9.0
[INFO] [stderr]     Checking num_cpus v1.16.0
[INFO] [stderr]     Checking smallvec v1.11.2
[INFO] [stderr]     Checking bktree v1.0.1
[INFO] [stderr]    Compiling serde_derive v1.0.194
[INFO] [stderr]    Compiling clap_derive v4.4.7
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking clap v4.4.12
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking sprs v0.11.1
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bustools v0.10.0
[INFO] [stderr]  Documenting bustools_cli v0.3.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: public documentation for `count` links to private item `ExpressionVector`
[INFO] [stdout]  --> src/count.rs:6:78
[INFO] [stdout]   |
[INFO] [stdout] 6 | //! 1. iterate over CBs, turn each cell (Busrecords from same cell) into an [ExpressionVector] (HashMap<Genename, u32>).
[INFO] [stdout]   |                                                                              ^^^^^^^^^^^^^^^^ this item is private
[INFO] [stdout]   |
[INFO] [stdout]   = note: this link resolves only because you passed `--document-private-items`, but will break without
[INFO] [stdout]   = note: `#[warn(rustdoc::private_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 45.87s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/bustools_cli/index.html
[INFO] running `Command { std: "docker" "inspect" "d26ec93bc375b0e982b63921be597d4997a42dbbce209403fd3cb2cce978977f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d26ec93bc375b0e982b63921be597d4997a42dbbce209403fd3cb2cce978977f", kill_on_drop: false }`
[INFO] [stdout] d26ec93bc375b0e982b63921be597d4997a42dbbce209403fd3cb2cce978977f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "rustdoc" "--lib" "-Zrustdoc-map" "-Z" "unstable-options" "--config" "build.rustdocflags=[\"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 04a03c81759d2533905b348d7a7f7ecf908a4d442219205dd7f61cd9c717c7a0
[INFO] running `Command { std: "docker" "start" "-a" "04a03c81759d2533905b348d7a7f7ecf908a4d442219205dd7f61cd9c717c7a0", kill_on_drop: false }`
[INFO] [stderr]  Documenting bustools_cli v0.3.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: public documentation for `count` links to private item `ExpressionVector`
[INFO] [stdout]  --> src/count.rs:6:78
[INFO] [stdout]   |
[INFO] [stdout] 6 | //! 1. iterate over CBs, turn each cell (Busrecords from same cell) into an [ExpressionVector] (HashMap<Genename, u32>).
[INFO] [stdout]   |                                                                              ^^^^^^^^^^^^^^^^ this item is private
[INFO] [stdout]   |
[INFO] [stdout]   = note: this link will resolve properly if you pass `--document-private-items`
[INFO] [stdout]   = note: `#[warn(rustdoc::private_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2.01s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/bustools_cli/index.html
[INFO] running `Command { std: "docker" "inspect" "04a03c81759d2533905b348d7a7f7ecf908a4d442219205dd7f61cd9c717c7a0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "04a03c81759d2533905b348d7a7f7ecf908a4d442219205dd7f61cd9c717c7a0", kill_on_drop: false }`
[INFO] [stdout] 04a03c81759d2533905b348d7a7f7ecf908a4d442219205dd7f61cd9c717c7a0