[INFO] cloning repository https://github.com/berquist/rchem [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/berquist/rchem" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fberquist%2Frchem", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fberquist%2Frchem'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 0a06a4edb6b1b83dee4494d4caf57b2525ad0e5b [INFO] documenting berquist/rchem against master#ef324565d071c6d7e2477a195648549e33d6a465 for pr-121659-bump-pulldown-cmark [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fberquist%2Frchem" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/berquist/rchem on toolchain ef324565d071c6d7e2477a195648549e33d6a465 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/berquist/rchem [INFO] finished tweaking git repo https://github.com/berquist/rchem [INFO] tweaked toml for git repo https://github.com/berquist/rchem written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/berquist/rchem already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/berquist/boys` [INFO] [stderr] Updating git repository `https://github.com/berquist/factorial` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cc v1.0.89 [INFO] [stderr] Downloaded lax v0.16.0 [INFO] [stderr] Downloaded libloading v0.8.2 [INFO] [stderr] Downloaded chemfiles v0.10.41 [INFO] [stderr] Downloaded ndarray-linalg v0.16.0 [INFO] [stderr] Downloaded GSL-sys v3.0.0 [INFO] [stderr] Downloaded GSL v7.0.0 [INFO] [stderr] Downloaded python3-sys v0.7.1 [INFO] [stderr] Downloaded cpython v0.7.1 [INFO] [stderr] Downloaded chemfiles-sys v0.10.41 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4d2e7c98fcd25825a04aa1427940df729bd8cd7bdd4b5564c0c8b79c1f56fe30 [INFO] running `Command { std: "docker" "start" "-a" "4d2e7c98fcd25825a04aa1427940df729bd8cd7bdd4b5564c0c8b79c1f56fe30", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4d2e7c98fcd25825a04aa1427940df729bd8cd7bdd4b5564c0c8b79c1f56fe30", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4d2e7c98fcd25825a04aa1427940df729bd8cd7bdd4b5564c0c8b79c1f56fe30", kill_on_drop: false }` [INFO] [stdout] 4d2e7c98fcd25825a04aa1427940df729bd8cd7bdd4b5564c0c8b79c1f56fe30 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 500681e8012e17936acaa8e3fea4ce23874b04b4d2926c7967a14419bcba9c91 [INFO] running `Command { std: "docker" "start" "-a" "500681e8012e17936acaa8e3fea4ce23874b04b4d2926c7967a14419bcba9c91", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling memchr v2.7.1 [INFO] [stderr] Compiling cc v1.0.89 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling serde v1.0.197 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling syn v2.0.48 [INFO] [stderr] Checking ppv-lite86 v0.2.17 [INFO] [stderr] Compiling clang-sys v1.7.0 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling aho-corasick v1.1.2 [INFO] [stderr] Compiling prettyplease v0.2.16 [INFO] [stderr] Compiling rustix v0.38.31 [INFO] [stderr] Compiling linux-raw-sys v0.4.13 [INFO] [stderr] Compiling bitflags v2.4.2 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling either v1.10.0 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Checking getrandom v0.2.12 [INFO] [stderr] Compiling libloading v0.8.2 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling netlib-src v0.8.0 [INFO] [stderr] Compiling regex-automata v0.4.5 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling GSL-sys v3.0.0 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling thiserror v1.0.57 [INFO] [stderr] Compiling bindgen v0.69.4 [INFO] [stderr] Compiling home v0.5.9 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling regex v1.10.3 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling chemfiles-sys v0.10.41 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling log v0.4.20 [INFO] [stderr] Compiling python3-sys v0.7.1 [INFO] [stderr] Compiling serde_derive v1.0.197 [INFO] [stderr] Compiling thiserror-impl v1.0.57 [INFO] [stderr] Checking lapack-sys v0.14.0 [INFO] [stderr] Checking cblas-sys v0.1.4 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Compiling cpython v0.7.1 [INFO] [stderr] Compiling serde_json v1.0.114 [INFO] [stderr] Checking GSL v7.0.0 [INFO] [stderr] Checking ryu v1.0.17 [INFO] [stderr] Checking factorial v0.2.1 (https://github.com/berquist/factorial?rev=0500498cdcc4f19d04111e3b3fc085c31a627300#0500498c) [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling katexit v0.1.4 [INFO] [stderr] Checking arrayvec v0.7.4 [INFO] [stderr] Checking boys v0.1.1 (https://github.com/berquist/boys#7105c469) [INFO] [stderr] Compiling rchem v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: the item `bindgen` is imported redundantly [INFO] [stdout] --> build.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use bindgen; [INFO] [stdout] | ^^^^^^^ the item `bindgen` is already defined here [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `cmake` is imported redundantly [INFO] [stdout] --> build.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use cmake; [INFO] [stdout] | ^^^^^ the item `cmake` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking num-complex v0.4.5 [INFO] [stderr] Checking cauchy v0.4.0 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] warning: rchem@0.1.0: Compiler version doesn't include clang or GCC: "cc" "--version" [INFO] [stderr] warning: rchem@0.1.0: Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: chemfiles-sys@0.10.41: Compiler version doesn't include clang or GCC: "cc" "--version" [INFO] [stderr] warning: chemfiles-sys@0.10.41: Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.41` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-fcb3f15f483a8c01/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_GENERATOR = None [INFO] [stderr] cargo:warning=Compiler version doesn't include clang or GCC: "cc" "--version" [INFO] [stderr] cargo:warning=Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE = None [INFO] [stderr] CMAKE = None [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-4a0998b5862c7430/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/chemfiles-sys-0.10.41/." "-DCHEMFILES_VERSION=0.10.4" "-DCHFL_RUST_PREBUILT_TARGET=x86_64-linux-gnu" "-DCHFL_RUST_PREBUILT_SHA256=2ac97eba5b79f8051cd86184e00379271c72e85d2bbcbcd50626b0ec602a1978" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-4a0998b5862c7430/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The CXX compiler identification is GNU 11.4.0 [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- trying to download https://github.com/chemfiles/chemfiles-prebuilt/releases/download/v0.10.4/chemfiles-static.v0.10.4.x86_64-linux-gnu.tar.gz [INFO] [stderr] -- failed to download prebuilt chemfiles, building from sources [INFO] [stderr] -- The C compiler identification is GNU 11.4.0 [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Unpacking bzip2 sources [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking pugixml sources [INFO] [stderr] -- Unpacking gemmi sources [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-4a0998b5862c7430/out/build [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-4a0998b5862c7430/out/build" && MAKEFLAGS="-j --jobserver-fds=7,8 --jobserver-auth=7,8" "cmake" "--build" "." "--target" "install" "--config" "Debug" [INFO] [stderr] [ 1%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o [INFO] [stderr] [ 1%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o [INFO] [stderr] [ 2%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/blocksort.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/huffman.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/crctable.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/compress.c.o [INFO] [stderr] [ 4%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/randtable.c.o [INFO] [stderr] [ 5%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/decompress.c.o [INFO] [stderr] [ 5%] Building C object chemfiles/external/bzip2/CMakeFiles/bzip2.dir/bzlib.c.o [INFO] [stderr] [ 6%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/check.c.o [INFO] [stderr] [ 6%] Built target bzip2 [INFO] [stderr] [ 6%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_fast.c.o [INFO] [stderr] [ 7%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o [INFO] [stderr] [ 8%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_table.c.o [INFO] [stderr] [ 8%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc64_fast.c.o [INFO] [stderr] [ 9%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc64_table.c.o [INFO] [stderr] [ 10%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/sha256.c.o [INFO] [stderr] [ 10%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/alone_decoder.c.o [INFO] [stderr] [ 10%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/File.cpp.o [INFO] [stderr] [ 10%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/auto_decoder.c.o [INFO] [stderr] [ 11%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/alone_encoder.c.o [INFO] [stderr] [ 12%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Format.cpp.o [INFO] [stderr] [ 13%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_buffer_decoder.c.o [INFO] [stderr] [ 13%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_buffer_encoder.c.o [INFO] [stderr] [ 14%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_decoder.c.o [INFO] [stderr] [ 14%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_encoder.c.o [INFO] [stderr] [ 14%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o [INFO] [stderr] [ 15%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_header_decoder.c.o [INFO] [stderr] [ 16%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_header_encoder.c.o [INFO] [stderr] [ 16%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_util.c.o [INFO] [stderr] [ 17%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/common.c.o [INFO] [stderr] [ 17%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_buffer_encoder.c.o [INFO] [stderr] [ 18%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_decoder_memusage.c.o [INFO] [stderr] [ 18%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_encoder.c.o [INFO] [stderr] [ 19%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_encoder_memusage.c.o [INFO] [stderr] [ 19%] Built target pugixml [INFO] [stderr] [ 20%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 21%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatMetadata.cpp.o [INFO] [stderr] [ 21%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_preset.c.o [INFO] [stderr] [ 22%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_buffer_decoder.c.o [INFO] [stderr] [ 23%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_buffer_encoder.c.o [INFO] [stderr] [ 23%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_common.c.o [INFO] [stderr] [ 24%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_decoder.c.o [INFO] [stderr] [ 24%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_encoder.c.o [INFO] [stderr] [ 25%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_flags_decoder.c.o [INFO] [stderr] [ 25%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_flags_encoder.c.o [INFO] [stderr] [ 26%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index.c.o [INFO] [stderr] [ 26%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_decoder.c.o [INFO] [stderr] [ 27%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_encoder.c.o [INFO] [stderr] [ 28%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_hash.c.o [INFO] [stderr] [ 28%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Frame.cpp.o [INFO] [stderr] [ 28%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_buffer_decoder.c.o [INFO] [stderr] [ 29%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_buffer_encoder.c.o [INFO] [stderr] [ 29%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_decoder.c.o [INFO] [stderr] [ 30%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_encoder.c.o [INFO] [stderr] [ 30%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_common.c.o [INFO] [stderr] [ 31%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_decoder.c.o [INFO] [stderr] [ 31%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_encoder.c.o [INFO] [stderr] [ 32%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o [INFO] [stderr] [ 33%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_decoder.c.o [INFO] [stderr] [ 34%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_encoder.c.o [INFO] [stderr] [ 34%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_size.c.o [INFO] [stderr] [ 35%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_common.c.o [INFO] [stderr] [ 36%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/moldenplugin.c.o [INFO] [stderr] [ 36%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_decoder.c.o [INFO] [stderr] [ 37%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_encoder.c.o [INFO] [stderr] [ 37%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/psfplugin.c.o [INFO] [stderr] [ 37%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_decoder.c.o [INFO] [stderr] [ 38%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_encoder.c.o [INFO] [stderr] [ 38%] Built target molfiles [INFO] [stderr] [ 38%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o [INFO] [stderr] [ 38%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_encoder_mf.c.o [INFO] [stderr] [ 39%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwt.c.o [INFO] [stderr] [ 39%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/coder.c.o [INFO] [stderr] [ 40%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/fastpos_table.c.o [INFO] [stderr] [ 41%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma2_decoder.c.o [INFO] [stderr] [ 42%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/dict.c.o [INFO] [stderr] [ 43%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma2_encoder.c.o [INFO] [stderr] [ 43%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o [INFO] [stderr] [ 43%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/fixpoint.c.o [INFO] [stderr] [ 43%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/os.cc.o [INFO] [stderr] [ 44%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_decoder.c.o [INFO] [stderr] [ 45%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffman.c.o [INFO] [stderr] [ 46%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffmem.c.o [INFO] [stderr] [ 46%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/lz77.c.o [INFO] [stderr] [ 46%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder.c.o [INFO] [stderr] [ 47%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/merge_sort.c.o [INFO] [stderr] [ 47%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/mtf.c.o [INFO] [stderr] [ 48%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/rle.c.o [INFO] [stderr] [ 48%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/tng_compress.c.o [INFO] [stderr] [ 49%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_optimum_fast.c.o [INFO] [stderr] [ 49%] Built target fmt [INFO] [stderr] [ 50%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/adler32.c.o [INFO] [stderr] [ 50%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_optimum_normal.c.o [INFO] [stderr] [ 50%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/compress.c.o [INFO] [stderr] [ 51%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/crc32.c.o [INFO] [stderr] [ 52%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/vals16.c.o [INFO] [stderr] [ 53%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_presets.c.o [INFO] [stderr] [ 53%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/warnmalloc.c.o [INFO] [stderr] [ 53%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/rangecoder/price_table.c.o [INFO] [stderr] [ 53%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/deflate.c.o [INFO] [stderr] [ 54%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/widemuldiv.c.o [INFO] [stderr] [ 55%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/arm.c.o [INFO] [stderr] [ 56%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/armthumb.c.o [INFO] [stderr] [ 56%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/ia64.c.o [INFO] [stderr] [ 57%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc2.c.o [INFO] [stderr] [ 58%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc3.c.o [INFO] [stderr] [ 58%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/powerpc.c.o [INFO] [stderr] [ 59%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzclose.c.o [INFO] [stderr] [ 60%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzlib.c.o [INFO] [stderr] [ 60%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_coder.c.o [INFO] [stderr] [ 60%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzread.c.o [INFO] [stderr] [ 61%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/lib/tng_io.c.o [INFO] [stderr] [ 62%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_decoder.c.o [INFO] [stderr] [ 63%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzwrite.c.o [INFO] [stderr] [ 64%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Residue.cpp.o [INFO] [stderr] [ 64%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_encoder.c.o [INFO] [stderr] [ 65%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/sparc.c.o [INFO] [stderr] [ 65%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inflate.c.o [INFO] [stderr] [ 65%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/x86.c.o [INFO] [stderr] [ 66%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/infback.c.o [INFO] [stderr] [ 66%] Built target lzma [INFO] [stderr] [ 66%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o [INFO] [stderr] [ 66%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inftrees.c.o [INFO] [stderr] [ 67%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inffast.c.o [INFO] [stderr] [ 68%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Topology.cpp.o [INFO] [stderr] [ 68%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/trees.c.o [INFO] [stderr] [ 69%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/uncompr.c.o [INFO] [stderr] [ 70%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/zutil.c.o [INFO] [stderr] [ 70%] Built target zlib [INFO] [stderr] [ 70%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o [INFO] [stderr] [ 71%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/UnitCell.cpp.o [INFO] [stderr] [ 71%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/lib/md5.c.o [INFO] [stderr] [ 71%] Built target tng_io [INFO] [stderr] [ 71%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/atom.cpp.o [INFO] [stderr] [ 72%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/cell.cpp.o [INFO] [stderr] [ 72%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/frame.cpp.o [INFO] [stderr] [ 73%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/misc.cpp.o [INFO] [stderr] [ 74%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/property.cpp.o [INFO] [stderr] [ 74%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/residue.cpp.o [INFO] [stderr] [ 75%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/selection.cpp.o [INFO] [stderr] [ 75%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/shared_allocator.cpp.o [INFO] [stderr] [ 76%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/topology.cpp.o [INFO] [stderr] [ 76%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/trajectory.cpp.o [INFO] [stderr] [ 77%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/BinaryFile.cpp.o [INFO] [stderr] [ 77%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/Bz2File.cpp.o [INFO] [stderr] [ 78%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/GzFile.cpp.o [INFO] [stderr] [ 79%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/MemoryBuffer.cpp.o [INFO] [stderr] [ 79%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/MemoryFile.cpp.o [INFO] [stderr] [ 80%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/Netcdf3File.cpp.o [INFO] [stderr] [ 80%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/PlainFile.cpp.o [INFO] [stderr] [ 81%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/TNGFile.cpp.o [INFO] [stderr] [ 81%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/XDRFile.cpp.o [INFO] [stderr] [ 82%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/files/XzFile.cpp.o [INFO] [stderr] [ 82%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/AmberNetCDF.cpp.o [INFO] [stderr] [ 83%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/CIF.cpp.o [INFO] [stderr] [ 84%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/CML.cpp.o [INFO] [stderr] [ 84%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/CSSR.cpp.o [INFO] [stderr] [ 85%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/DCD.cpp.o [INFO] [stderr] [ 85%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/GRO.cpp.o [INFO] [stderr] [ 86%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/LAMMPSData.cpp.o [INFO] [stderr] [ 86%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/LAMMPSTrajectory.cpp.o [INFO] [stderr] [ 87%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/MMTF.cpp.o [INFO] [stderr] [ 87%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/MOL2.cpp.o [INFO] [stderr] [ 88%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/Molfile.cpp.o [INFO] [stderr] [ 89%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/PDB.cpp.o [INFO] [stderr] [ 89%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/SDF.cpp.o [INFO] [stderr] [ 90%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/SMI.cpp.o [INFO] [stderr] [ 90%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/TNG.cpp.o [INFO] [stderr] [ 91%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/TPR.cpp.o [INFO] [stderr] [ 91%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/TRR.cpp.o [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning (dev) at chemfiles/CMakeLists.txt:35 (option): [INFO] [stderr] Policy CMP0077 is not set: option() honors normal variables. Run "cmake [INFO] [stderr] --help-policy CMP0077" for policy details. Use the cmake_policy command to [INFO] [stderr] set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] For compatibility with older versions of CMake, option is clearing the [INFO] [stderr] normal variable 'BUILD_SHARED_LIBS'. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning: [INFO] [stderr] Manually-specified variables were not used by the project: [INFO] [stderr] [INFO] [stderr] CMAKE_ASM_COMPILER [INFO] [stderr] CMAKE_ASM_FLAGS [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:664: chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/MMTF.cpp.o] Error 1 [INFO] [stderr] gmake[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:214: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] gmake: *** [Makefile:136: all] Error 2 [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.50/src/lib.rs:1098:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560bdaf922d6 - std::backtrace_rs::backtrace::libunwind::trace::hcd31ff68bb8eb3c8 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/../../backtrace/src/backtrace/libunwind.rs:104:5 [INFO] [stderr] 1: 0x560bdaf922d6 - std::backtrace_rs::backtrace::trace_unsynchronized::h14d76bd5509bf096 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x560bdaf922d6 - std::sys_common::backtrace::_print_fmt::hccb1d92c773f2e33 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:68:5 [INFO] [stderr] 3: 0x560bdaf922d6 - ::fmt::haec236aae0c71094 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:44:22 [INFO] [stderr] 4: 0x560bdafb5f1c - core::fmt::rt::Argument::fmt::hfe5c81d163ead061 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/fmt/rt.rs:142:9 [INFO] [stderr] 5: 0x560bdafb5f1c - core::fmt::write::hae70f68f90cda8d6 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/fmt/mod.rs:1120:17 [INFO] [stderr] 6: 0x560bdaf8f6cf - std::io::Write::write_fmt::h2920683ffc23d04e [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/io/mod.rs:1846:15 [INFO] [stderr] 7: 0x560bdaf92084 - std::sys_common::backtrace::_print::h5625fa16158ef797 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:47:5 [INFO] [stderr] 8: 0x560bdaf92084 - std::sys_common::backtrace::print::h736502c57d395fe5 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:34:9 [INFO] [stderr] 9: 0x560bdaf9378b - std::panicking::default_hook::{{closure}}::hd092ecfc821f695b [INFO] [stderr] 10: 0x560bdaf934d9 - std::panicking::default_hook::h7f251f2c2a8aa52c [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:292:9 [INFO] [stderr] 11: 0x560bdaf93c2d - std::panicking::rust_panic_with_hook::h50c9145ee7057605 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:779:13 [INFO] [stderr] 12: 0x560bdaf93b02 - std::panicking::begin_panic_handler::{{closure}}::h94d2e31aacd46455 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:657:13 [INFO] [stderr] 13: 0x560bdaf927b6 - std::sys_common::backtrace::__rust_end_short_backtrace::h38d64ea497d2de47 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:171:18 [INFO] [stderr] 14: 0x560bdaf93834 - rust_begin_unwind [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:645:5 [INFO] [stderr] 15: 0x560bdaf08135 - core::panicking::panic_fmt::ha1515334750a7e83 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/panicking.rs:72:14 [INFO] [stderr] 16: 0x560bdaf1e281 - cmake::fail::heb8d676795b8a95c [INFO] [stderr] 17: 0x560bdaf1da16 - cmake::run::hc4245f314ca65816 [INFO] [stderr] 18: 0x560bdaf1a282 - cmake::Config::build::h2f6bdd77b232e657 [INFO] [stderr] 19: 0x560bdaf0b715 - build_script_build::build_chemfiles::h3f0e1673419896ce [INFO] [stderr] 20: 0x560bdaf0aba3 - build_script_build::main::h0a437aae105b3974 [INFO] [stderr] 21: 0x560bdaf08d13 - core::ops::function::FnOnce::call_once::h194567fc0ab69322 [INFO] [stderr] 22: 0x560bdaf08826 - std::sys_common::backtrace::__rust_begin_short_backtrace::h6c5b4c0b9662ce29 [INFO] [stderr] 23: 0x560bdaf08939 - std::rt::lang_start::{{closure}}::hfb1a443301dd51d6 [INFO] [stderr] 24: 0x560bdaf8b8c3 - core::ops::function::impls:: for &F>::call_once::hc7f8dd05f96b491f [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 25: 0x560bdaf8b8c3 - std::panicking::try::do_call::h1bd43f02a24e6751 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:552:40 [INFO] [stderr] 26: 0x560bdaf8b8c3 - std::panicking::try::hf947459dccbaf55e [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:516:19 [INFO] [stderr] 27: 0x560bdaf8b8c3 - std::panic::catch_unwind::h2c7375dd4d29a430 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panic.rs:142:14 [INFO] [stderr] 28: 0x560bdaf8b8c3 - std::rt::lang_start_internal::{{closure}}::hbe7f5719fb8f5ec0 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/rt.rs:148:48 [INFO] [stderr] 29: 0x560bdaf8b8c3 - std::panicking::try::do_call::hb71a42f44bf8deaf [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:552:40 [INFO] [stderr] 30: 0x560bdaf8b8c3 - std::panicking::try::h2f4a644426d0df1f [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:516:19 [INFO] [stderr] 31: 0x560bdaf8b8c3 - std::panic::catch_unwind::h81097bad143deaf0 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panic.rs:142:14 [INFO] [stderr] 32: 0x560bdaf8b8c3 - std::rt::lang_start_internal::h804ebd158eb3c43e [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/rt.rs:148:20 [INFO] [stderr] 33: 0x560bdaf08917 - std::rt::lang_start::ha047488f9c5dd1fd [INFO] [stderr] 34: 0x560bdaf0c1e5 - main [INFO] [stderr] 35: 0x7f1658e0dd90 - [INFO] [stderr] 36: 0x7f1658e0de40 - __libc_start_main [INFO] [stderr] 37: 0x560bdaf08755 - _start [INFO] [stderr] 38: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "500681e8012e17936acaa8e3fea4ce23874b04b4d2926c7967a14419bcba9c91", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "500681e8012e17936acaa8e3fea4ce23874b04b4d2926c7967a14419bcba9c91", kill_on_drop: false }` [INFO] [stdout] 500681e8012e17936acaa8e3fea4ce23874b04b4d2926c7967a14419bcba9c91 [INFO] documenting berquist/rchem against try#223112bf1ca31911a6475910c77b36bfa127d5f8 for pr-121659-bump-pulldown-cmark [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fberquist%2Frchem" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/berquist/rchem on toolchain 223112bf1ca31911a6475910c77b36bfa127d5f8 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/berquist/rchem [INFO] finished tweaking git repo https://github.com/berquist/rchem [INFO] tweaked toml for git repo https://github.com/berquist/rchem written to /workspace/builds/worker-0-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/berquist/rchem already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 598c16a17680a72a3f0dc4d2eeb31db4dd58b483227d6670dbf6bb0b6e5c176e [INFO] running `Command { std: "docker" "start" "-a" "598c16a17680a72a3f0dc4d2eeb31db4dd58b483227d6670dbf6bb0b6e5c176e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "598c16a17680a72a3f0dc4d2eeb31db4dd58b483227d6670dbf6bb0b6e5c176e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "598c16a17680a72a3f0dc4d2eeb31db4dd58b483227d6670dbf6bb0b6e5c176e", kill_on_drop: false }` [INFO] [stdout] 598c16a17680a72a3f0dc4d2eeb31db4dd58b483227d6670dbf6bb0b6e5c176e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 838fe9030d57463b3400ffae5d20288c4b7a627456b003c04fc098cde97febae [INFO] running `Command { std: "docker" "start" "-a" "838fe9030d57463b3400ffae5d20288c4b7a627456b003c04fc098cde97febae", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling memchr v2.7.1 [INFO] [stderr] Compiling cc v1.0.89 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling serde v1.0.197 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling syn v2.0.48 [INFO] [stderr] Checking ppv-lite86 v0.2.17 [INFO] [stderr] Compiling clang-sys v1.7.0 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling aho-corasick v1.1.2 [INFO] [stderr] Compiling rustix v0.38.31 [INFO] [stderr] Compiling prettyplease v0.2.16 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling linux-raw-sys v0.4.13 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling bitflags v2.4.2 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling either v1.10.0 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Checking getrandom v0.2.12 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling netlib-src v0.8.0 [INFO] [stderr] Compiling regex-automata v0.4.5 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling GSL-sys v3.0.0 [INFO] [stderr] Compiling libloading v0.8.2 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling bindgen v0.69.4 [INFO] [stderr] Compiling home v0.5.9 [INFO] [stderr] Compiling thiserror v1.0.57 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling chemfiles-sys v0.10.41 [INFO] [stderr] Compiling regex v1.10.3 [INFO] [stderr] Compiling log v0.4.20 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Checking cblas-sys v0.1.4 [INFO] [stderr] Checking lapack-sys v0.14.0 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Compiling serde_json v1.0.114 [INFO] [stderr] Compiling python3-sys v0.7.1 [INFO] [stderr] Compiling cpython v0.7.1 [INFO] [stderr] Compiling serde_derive v1.0.197 [INFO] [stderr] Compiling thiserror-impl v1.0.57 [INFO] [stderr] Checking GSL v7.0.0 [INFO] [stderr] Checking ryu v1.0.17 [INFO] [stderr] Compiling katexit v0.1.4 [INFO] [stderr] Checking boys v0.1.1 (https://github.com/berquist/boys#7105c469) [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking factorial v0.2.1 (https://github.com/berquist/factorial?rev=0500498cdcc4f19d04111e3b3fc085c31a627300#0500498c) [INFO] [stderr] Checking arrayvec v0.7.4 [INFO] [stderr] Compiling rchem v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: the item `bindgen` is imported redundantly [INFO] [stdout] --> build.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use bindgen; [INFO] [stdout] | ^^^^^^^ the item `bindgen` is already defined here [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `cmake` is imported redundantly [INFO] [stdout] --> build.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use cmake; [INFO] [stdout] | ^^^^^ the item `cmake` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking num-complex v0.4.5 [INFO] [stderr] Checking cauchy v0.4.0 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] warning: rchem@0.1.0: Compiler version doesn't include clang or GCC: "cc" "--version" [INFO] [stderr] warning: rchem@0.1.0: Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] Checking lax v0.16.0 [INFO] [stderr] Checking ndarray-linalg v0.16.0 [INFO] [stderr] Checking chemfiles v0.10.41 [INFO] [stderr] Documenting rchem v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 02s [INFO] [stderr] Generated /opt/rustwide/target/doc/rchem/index.html [INFO] running `Command { std: "docker" "inspect" "838fe9030d57463b3400ffae5d20288c4b7a627456b003c04fc098cde97febae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "838fe9030d57463b3400ffae5d20288c4b7a627456b003c04fc098cde97febae", kill_on_drop: false }` [INFO] [stdout] 838fe9030d57463b3400ffae5d20288c4b7a627456b003c04fc098cde97febae [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+223112bf1ca31911a6475910c77b36bfa127d5f8" "rustdoc" "--lib" "-Zrustdoc-map" "-Z" "unstable-options" "--config" "build.rustdocflags=[\"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c2858273121feb9ec6accd020e1d92c15040f9a2c51fe5661bdbfee988c78f34 [INFO] running `Command { std: "docker" "start" "-a" "c2858273121feb9ec6accd020e1d92c15040f9a2c51fe5661bdbfee988c78f34", kill_on_drop: false }` [INFO] [stderr] warning: rchem@0.1.0: Compiler version doesn't include clang or GCC: "cc" "--version" [INFO] [stderr] warning: rchem@0.1.0: Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] Documenting rchem v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: the item `bindgen` is imported redundantly [INFO] [stdout] --> build.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use bindgen; [INFO] [stdout] | ^^^^^^^ the item `bindgen` is already defined here [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `cmake` is imported redundantly [INFO] [stdout] --> build.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use cmake; [INFO] [stdout] | ^^^^^ the item `cmake` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1.00s [INFO] [stderr] Generated /opt/rustwide/target/doc/rchem/index.html [INFO] running `Command { std: "docker" "inspect" "c2858273121feb9ec6accd020e1d92c15040f9a2c51fe5661bdbfee988c78f34", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c2858273121feb9ec6accd020e1d92c15040f9a2c51fe5661bdbfee988c78f34", kill_on_drop: false }` [INFO] [stdout] c2858273121feb9ec6accd020e1d92c15040f9a2c51fe5661bdbfee988c78f34