[INFO] fetching crate slow5lib-sys 0.9.0+slow5lib.1.1.0...
[INFO] documenting slow5lib-sys-0.9.0+slow5lib.1.1.0 against master#ef324565d071c6d7e2477a195648549e33d6a465 for pr-121659-bump-pulldown-cmark
[INFO] extracting crate slow5lib-sys 0.9.0+slow5lib.1.1.0 into /workspace/builds/worker-2-tc1/source
[INFO] validating manifest of crates.io crate slow5lib-sys 0.9.0+slow5lib.1.1.0 on toolchain ef324565d071c6d7e2477a195648549e33d6a465
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate slow5lib-sys 0.9.0+slow5lib.1.1.0
[INFO] finished tweaking crates.io crate slow5lib-sys 0.9.0+slow5lib.1.1.0
[INFO] tweaked toml for crates.io crate slow5lib-sys 0.9.0+slow5lib.1.1.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate crates.io crate slow5lib-sys 0.9.0+slow5lib.1.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded prettyplease v0.2.13
[INFO] [stderr]   Downloaded cstr v0.2.11
[INFO] [stderr]   Downloaded syn v2.0.30
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5b5249046614ff9e71824d9167e3f817b5c2419004489d7e55f0f0013dec1996
[INFO] running `Command { std: "docker" "start" "-a" "5b5249046614ff9e71824d9167e3f817b5c2419004489d7e55f0f0013dec1996", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5b5249046614ff9e71824d9167e3f817b5c2419004489d7e55f0f0013dec1996", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5b5249046614ff9e71824d9167e3f817b5c2419004489d7e55f0f0013dec1996", kill_on_drop: false }`
[INFO] [stdout] 5b5249046614ff9e71824d9167e3f817b5c2419004489d7e55f0f0013dec1996
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b9de8e1bfd6cb875a1cdd5d47716e4d717fb5a4a2b8a1a6db455e2f1e3649d19
[INFO] running `Command { std: "docker" "start" "-a" "b9de8e1bfd6cb875a1cdd5d47716e4d717fb5a4a2b8a1a6db455e2f1e3649d19", kill_on_drop: false }`
[INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion
[INFO] [stderr]    Compiling libc v0.2.137
[INFO] [stderr]    Compiling proc-macro2 v1.0.66
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling prettyplease v0.2.13
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling either v1.8.0
[INFO] [stderr]    Compiling regex-syntax v0.6.28
[INFO] [stderr]    Compiling bindgen v0.66.1
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling libloading v0.7.4
[INFO] [stderr]    Compiling bitflags v2.4.0
[INFO] [stderr]    Compiling dunce v1.0.3
[INFO] [stderr]    Compiling clang-sys v1.4.0
[INFO] [stderr]    Compiling jobserver v0.1.25
[INFO] [stderr]    Compiling which v4.3.0
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]    Compiling nom v7.1.1
[INFO] [stderr]    Compiling quote v1.0.33
[INFO] [stderr]    Compiling syn v2.0.30
[INFO] [stderr]    Compiling zstd-sys v2.0.7+zstd.1.5.4
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]    Compiling regex v1.7.0
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling slow5lib-sys v0.9.0+slow5lib.1.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_build':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:180:20: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   180 |     if(curr_offset == -1){
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                    ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:207:19: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   207 |         if(offset == -1){
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                   ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:233:23: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   233 |             if(offset == -1){
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                       ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_init':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   191 |     if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                                                   ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_press.c: In function 'slow5_fwrite_compress':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   558 |                 if (bytes != size * nmemb || ferror(fp)) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                           ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   559 |                     if (bytes != size * nmemb) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                               ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_init_empty':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   265 |     if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                                                   ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_press.c: In function 'slow5_pread_depress_solo':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   686 |     if ((ret = pread(fd, raw, count, offset)) != count) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                                               ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_get_mem':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c:2465:49: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:  2465 |     if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                                                 ^~
[INFO] [stderr]  Documenting slow5lib-sys v0.9.0+slow5lib.1.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 12.20s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/slow5lib_sys/index.html
[INFO] running `Command { std: "docker" "inspect" "b9de8e1bfd6cb875a1cdd5d47716e4d717fb5a4a2b8a1a6db455e2f1e3649d19", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b9de8e1bfd6cb875a1cdd5d47716e4d717fb5a4a2b8a1a6db455e2f1e3649d19", kill_on_drop: false }`
[INFO] [stdout] b9de8e1bfd6cb875a1cdd5d47716e4d717fb5a4a2b8a1a6db455e2f1e3649d19
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "rustdoc" "--lib" "-Zrustdoc-map" "-Z" "unstable-options" "--config" "build.rustdocflags=[\"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 90399e2463f34402000230e6a8d4eff1d08c3f812269b3a4545542b305cc1cea
[INFO] running `Command { std: "docker" "start" "-a" "90399e2463f34402000230e6a8d4eff1d08c3f812269b3a4545542b305cc1cea", kill_on_drop: false }`
[INFO] [stderr] warning: version requirement `2.0.6+zstd.1.5.2` for dependency `zstd-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_idx.c: In function 'slow5_idx_build':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:180:20: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   180 |     if(curr_offset == -1){
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                    ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:207:19: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   207 |         if(offset == -1){
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                   ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_idx.c:233:23: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   233 |             if(offset == -1){
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                       ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_init':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   191 |     if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                                                   ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_press.c: In function 'slow5_fwrite_compress':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   558 |                 if (bytes != size * nmemb || ferror(fp)) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                           ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   559 |                     if (bytes != size * nmemb) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                               ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_init_empty':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   265 |     if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                                                   ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_press.c: In function 'slow5_pread_depress_solo':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:   686 |     if ((ret = pread(fd, raw, count, offset)) != count) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                                               ^~
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c: In function 'slow5_get_mem':
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0: slow5lib/src/slow5.c:2465:49: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:  2465 |     if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) {
[INFO] [stderr] warning: slow5lib-sys@0.9.0+slow5lib.1.1.0:       |                                                 ^~
[INFO] [stderr]  Documenting slow5lib-sys v0.9.0+slow5lib.1.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.46s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/slow5lib_sys/index.html
[INFO] running `Command { std: "docker" "inspect" "90399e2463f34402000230e6a8d4eff1d08c3f812269b3a4545542b305cc1cea", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "90399e2463f34402000230e6a8d4eff1d08c3f812269b3a4545542b305cc1cea", kill_on_drop: false }`
[INFO] [stdout] 90399e2463f34402000230e6a8d4eff1d08c3f812269b3a4545542b305cc1cea