[INFO] cloning repository https://github.com/yesint/pteros_rust [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/yesint/pteros_rust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyesint%2Fpteros_rust", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyesint%2Fpteros_rust'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 492035e0d40a5d4665a6e7612b7223e164d2383e [INFO] documenting yesint/pteros_rust/492035e0d40a5d4665a6e7612b7223e164d2383e against master#ef324565d071c6d7e2477a195648549e33d6a465 for pr-121659-bump-pulldown-cmark [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fyesint%2Fpteros_rust" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/yesint/pteros_rust on toolchain ef324565d071c6d7e2477a195648549e33d6a465 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/yesint/pteros_rust [INFO] finished tweaking git repo https://github.com/yesint/pteros_rust [INFO] tweaked toml for git repo https://github.com/yesint/pteros_rust written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded cxx-build v1.0.119 [INFO] [stderr] Downloaded cxxbridge-flags v1.0.119 [INFO] [stderr] Downloaded ciborium-io v0.2.2 [INFO] [stderr] Downloaded clap v4.5.2 [INFO] [stderr] Downloaded plotters-svg v0.3.5 [INFO] [stderr] Downloaded ascii v1.1.0 [INFO] [stderr] Downloaded peg v0.8.2 [INFO] [stderr] Downloaded ciborium v0.2.2 [INFO] [stderr] Downloaded criterion v0.5.1 [INFO] [stderr] Downloaded cxx v1.0.119 [INFO] [stderr] Downloaded clap_builder v4.5.2 [INFO] [stderr] Downloaded peg-macros v0.8.2 [INFO] [stderr] Downloaded cxxbridge-macro v1.0.119 [INFO] [stderr] Downloaded link-cplusplus v1.0.9 [INFO] [stderr] Downloaded ciborium-ll v0.2.2 [INFO] [stderr] Downloaded scratch v1.0.7 [INFO] [stderr] Downloaded peg-runtime v0.8.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 040b015a7d16720888deeed602775731ad895024ef126b20c23b332efe1e907a [INFO] running `Command { std: "docker" "start" "-a" "040b015a7d16720888deeed602775731ad895024ef126b20c23b332efe1e907a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "040b015a7d16720888deeed602775731ad895024ef126b20c23b332efe1e907a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "040b015a7d16720888deeed602775731ad895024ef126b20c23b332efe1e907a", kill_on_drop: false }` [INFO] [stdout] 040b015a7d16720888deeed602775731ad895024ef126b20c23b332efe1e907a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+ef324565d071c6d7e2477a195648549e33d6a465" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4c60f0034a4a36a7bd25b5daaddc66b9ac6b49cccf80cdc63809fb584af4e68f [INFO] running `Command { std: "docker" "start" "-a" "4c60f0034a4a36a7bd25b5daaddc66b9ac6b49cccf80cdc63809fb584af4e68f", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.78 [INFO] [stderr] Compiling cc v1.0.90 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling prettyplease v0.2.16 [INFO] [stderr] Compiling rustix v0.38.31 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling linux-raw-sys v0.4.13 [INFO] [stderr] Compiling bitflags v2.4.2 [INFO] [stderr] Compiling either v1.10.0 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling memchr v2.7.1 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling bindgen v0.69.4 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling libloading v0.8.3 [INFO] [stderr] Compiling home v0.5.9 [INFO] [stderr] Compiling log v0.4.21 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling anyhow v1.0.80 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling scratch v1.0.7 [INFO] [stderr] Compiling crossbeam-utils v0.8.19 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling unicode-width v0.1.11 [INFO] [stderr] Checking ascii v1.1.0 [INFO] [stderr] Compiling clang-sys v1.7.0 [INFO] [stderr] Compiling cxxbridge-flags v1.0.119 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling codespan-reporting v0.11.1 [INFO] [stderr] Compiling once_cell v1.19.0 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling paste v1.0.14 [INFO] [stderr] Checking bytemuck v1.14.3 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling syn v2.0.52 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Checking crossbeam-deque v0.8.5 [INFO] [stderr] Checking wide v0.7.15 [INFO] [stderr] Compiling peg-runtime v0.8.2 [INFO] [stderr] Compiling regex-automata v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.5 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling link-cplusplus v1.0.9 [INFO] [stderr] Compiling cxx v1.0.119 [INFO] [stderr] Checking aho-corasick v1.1.2 [INFO] [stderr] Compiling molar_molfile v0.1.0 (/opt/rustwide/workdir/crates/molar_molfile) [INFO] [stderr] Compiling molar_xdrfile v0.1.0 (/opt/rustwide/workdir/crates/molar_xdrfile) [INFO] [stderr] Compiling peg-macros v0.8.2 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling molar v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking rayon v1.9.0 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking simba v0.8.1 [INFO] [stderr] Compiling regex v1.10.3 [INFO] [stderr] warning: molar_molfile@0.1.0: Compiler version doesn't include clang or GCC: "cc" "--version" [INFO] [stderr] warning: molar_molfile@0.1.0: Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] Checking peg v0.8.2 [INFO] [stderr] warning: molar_xdrfile@0.1.0: Compiler version doesn't include clang or GCC: "cc" "--version" [INFO] [stderr] warning: molar_xdrfile@0.1.0: Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] Compiling nalgebra-macros v0.2.1 [INFO] [stderr] Compiling cxx-build v1.0.119 [INFO] [stderr] Compiling cxxbridge-macro v1.0.119 [INFO] [stderr] Compiling molar_sasa v0.1.0 (/opt/rustwide/workdir/crates/molar_sasa) [INFO] [stdout] warning: unused imports: `env`, `path::PathBuf` [INFO] [stdout] --> crates/molar_sasa/build.rs:1:11 [INFO] [stdout] | [INFO] [stdout] 1 | use std::{env, path::PathBuf}; [INFO] [stdout] | ^^^ ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking nalgebra v0.32.4 [INFO] [stderr] Compiling molar_gromacs v0.1.0 (/opt/rustwide/workdir/crates/molar_gromacs) [INFO] [stderr] Compiling molar_powersasa v0.1.0 (/opt/rustwide/workdir/crates/molar_powersasa) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: molar_powersasa@0.1.0: Compiler version doesn't include clang or GCC: "cc" "--version" [INFO] [stderr] warning: molar_powersasa@0.1.0: Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `molar_powersasa v0.1.0 (/opt/rustwide/workdir/crates/molar_powersasa)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/molar_powersasa-066a05fbd72acc1c/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_GENERATOR = None [INFO] [stderr] cargo:warning=Compiler version doesn't include clang or GCC: "cc" "--version" [INFO] [stderr] cargo:warning=Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE = None [INFO] [stderr] CMAKE = None [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/molar_powersasa-4b4034f9d14eac57/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/crates/molar_powersasa/powersasa" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/molar_powersasa-4b4034f9d14eac57/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- The CXX compiler identification is GNU 11.4.0 [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- CPM: adding package Eigen3@3.4 (3.4 to /root/.local/CPM_CACHE/eigen3/e41c41b71b0a87117a2157113a46cac6ee52d853) [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/molar_powersasa-4b4034f9d14eac57/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [ 11%] Creating directories for 'eigen3-populate' [INFO] [stderr] [ 22%] Performing download step (git clone) for 'eigen3-populate' [INFO] [stderr] Cloning into 'e41c41b71b0a87117a2157113a46cac6ee52d853'... [INFO] [stderr] fatal: unable to access 'https://gitlab.com/libeigen/eigen.git/': Could not resolve host: gitlab.com [INFO] [stderr] Cloning into 'e41c41b71b0a87117a2157113a46cac6ee52d853'... [INFO] [stderr] fatal: unable to access 'https://gitlab.com/libeigen/eigen.git/': Could not resolve host: gitlab.com [INFO] [stderr] Cloning into 'e41c41b71b0a87117a2157113a46cac6ee52d853'... [INFO] [stderr] fatal: unable to access 'https://gitlab.com/libeigen/eigen.git/': Could not resolve host: gitlab.com [INFO] [stderr] -- Had to git clone more than once: [INFO] [stderr] 3 times. [INFO] [stderr] CMake Error at /opt/rustwide/target/debug/build/molar_powersasa-4b4034f9d14eac57/out/build/_deps/eigen3-subbuild/eigen3-populate-prefix/tmp/eigen3-populate-gitclone.cmake:31 (message): [INFO] [stderr] Failed to clone repository: 'https://gitlab.com/libeigen/eigen.git' [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] gmake[2]: *** [CMakeFiles/eigen3-populate.dir/build.make:102: eigen3-populate-prefix/src/eigen3-populate-stamp/eigen3-populate-download] Error 1 [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:83: CMakeFiles/eigen3-populate.dir/all] Error 2 [INFO] [stderr] gmake: *** [Makefile:91: all] Error 2 [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.22/Modules/FetchContent.cmake:1087 (message): [INFO] [stderr] Build step for eigen3 failed: 2 [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.22/Modules/FetchContent.cmake:1216:EVAL:2 (__FetchContent_directPopulate) [INFO] [stderr] /usr/share/cmake-3.22/Modules/FetchContent.cmake:1216 (cmake_language) [INFO] [stderr] CPM.cmake:967 (FetchContent_Populate) [INFO] [stderr] CPM.cmake:773 (cpm_fetch_package) [INFO] [stderr] CMakeLists.txt:16 (CPMAddPackage) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.50/src/lib.rs:1098:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x555dbdccf556 - std::backtrace_rs::backtrace::libunwind::trace::hcd31ff68bb8eb3c8 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/../../backtrace/src/backtrace/libunwind.rs:104:5 [INFO] [stderr] 1: 0x555dbdccf556 - std::backtrace_rs::backtrace::trace_unsynchronized::h14d76bd5509bf096 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x555dbdccf556 - std::sys_common::backtrace::_print_fmt::hccb1d92c773f2e33 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:68:5 [INFO] [stderr] 3: 0x555dbdccf556 - ::fmt::haec236aae0c71094 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:44:22 [INFO] [stderr] 4: 0x555dbdcf94ac - core::fmt::rt::Argument::fmt::hfe5c81d163ead061 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/fmt/rt.rs:142:9 [INFO] [stderr] 5: 0x555dbdcf94ac - core::fmt::write::hae70f68f90cda8d6 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/fmt/mod.rs:1120:17 [INFO] [stderr] 6: 0x555dbdccc3ff - std::io::Write::write_fmt::h2920683ffc23d04e [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/io/mod.rs:1846:15 [INFO] [stderr] 7: 0x555dbdccf304 - std::sys_common::backtrace::_print::h5625fa16158ef797 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:47:5 [INFO] [stderr] 8: 0x555dbdccf304 - std::sys_common::backtrace::print::h736502c57d395fe5 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:34:9 [INFO] [stderr] 9: 0x555dbdcd0b6b - std::panicking::default_hook::{{closure}}::hd092ecfc821f695b [INFO] [stderr] 10: 0x555dbdcd08b9 - std::panicking::default_hook::h7f251f2c2a8aa52c [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:292:9 [INFO] [stderr] 11: 0x555dbdcd100d - std::panicking::rust_panic_with_hook::h50c9145ee7057605 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:779:13 [INFO] [stderr] 12: 0x555dbdcd0ee2 - std::panicking::begin_panic_handler::{{closure}}::h94d2e31aacd46455 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:657:13 [INFO] [stderr] 13: 0x555dbdccfa36 - std::sys_common::backtrace::__rust_end_short_backtrace::h38d64ea497d2de47 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:171:18 [INFO] [stderr] 14: 0x555dbdcd0c14 - rust_begin_unwind [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:645:5 [INFO] [stderr] 15: 0x555dbd6c42f5 - core::panicking::panic_fmt::ha1515334750a7e83 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/panicking.rs:72:14 [INFO] [stderr] 16: 0x555dbdc591e1 - cmake::fail::h69289738e1c7a9df [INFO] [stderr] 17: 0x555dbdc58976 - cmake::run::he4c47d92ebc90997 [INFO] [stderr] 18: 0x555dbdc54a38 - cmake::Config::build::h099d8f59692aeba7 [INFO] [stderr] 19: 0x555dbd6c86a7 - build_script_build::main::hec205030c16fac1e [INFO] [stderr] 20: 0x555dbd6c5603 - core::ops::function::FnOnce::call_once::h7d138c3325229d34 [INFO] [stderr] 21: 0x555dbd6c4b56 - std::sys_common::backtrace::__rust_begin_short_backtrace::h9c3e961e239d2950 [INFO] [stderr] 22: 0x555dbd6c5209 - std::rt::lang_start::{{closure}}::hdabdf0077558b5bf [INFO] [stderr] 23: 0x555dbdcc7bc3 - core::ops::function::impls:: for &F>::call_once::hc7f8dd05f96b491f [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 24: 0x555dbdcc7bc3 - std::panicking::try::do_call::h1bd43f02a24e6751 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:552:40 [INFO] [stderr] 25: 0x555dbdcc7bc3 - std::panicking::try::hf947459dccbaf55e [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:516:19 [INFO] [stderr] 26: 0x555dbdcc7bc3 - std::panic::catch_unwind::h2c7375dd4d29a430 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panic.rs:142:14 [INFO] [stderr] 27: 0x555dbdcc7bc3 - std::rt::lang_start_internal::{{closure}}::hbe7f5719fb8f5ec0 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/rt.rs:148:48 [INFO] [stderr] 28: 0x555dbdcc7bc3 - std::panicking::try::do_call::hb71a42f44bf8deaf [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:552:40 [INFO] [stderr] 29: 0x555dbdcc7bc3 - std::panicking::try::h2f4a644426d0df1f [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:516:19 [INFO] [stderr] 30: 0x555dbdcc7bc3 - std::panic::catch_unwind::h81097bad143deaf0 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panic.rs:142:14 [INFO] [stderr] 31: 0x555dbdcc7bc3 - std::rt::lang_start_internal::h804ebd158eb3c43e [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/rt.rs:148:20 [INFO] [stderr] 32: 0x555dbd6c51e7 - std::rt::lang_start::hd65d495bcf52ebcb [INFO] [stderr] 33: 0x555dbd6c8bf5 - main [INFO] [stderr] 34: 0x7fb820fd0d90 - [INFO] [stderr] 35: 0x7fb820fd0e40 - __libc_start_main [INFO] [stderr] 36: 0x555dbd6c4a85 - _start [INFO] [stderr] 37: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: molar_gromacs@0.1.0: Compiler version doesn't include clang or GCC: "cc" "--version" [INFO] [stderr] warning: molar_gromacs@0.1.0: Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `molar_gromacs v0.1.0 (/opt/rustwide/workdir/crates/molar_gromacs)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/molar_gromacs-e67e1f4c77b3fac3/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_GENERATOR = None [INFO] [stderr] cargo:warning=Compiler version doesn't include clang or GCC: "cc" "--version" [INFO] [stderr] cargo:warning=Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE = None [INFO] [stderr] CMAKE = None [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/molar_gromacs-35ee23f4e58f4318/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/crates/molar_gromacs/gromacs" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/molar_gromacs-35ee23f4e58f4318/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- The CXX compiler identification is GNU 11.4.0 [INFO] [stderr] -- The C compiler identification is GNU 11.4.0 [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- CPM: adding package GROMACS@ (main to /root/.local/CPM_CACHE/gromacs/0f509f8ece154afdc0d43ddfee930fef9fdc0704) [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/molar_gromacs-35ee23f4e58f4318/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] !!!ENV: [INFO] [stderr] !!!ENV: [INFO] [stderr] !!!ENV: [INFO] [stderr] [ 11%] Creating directories for 'gromacs-populate' [INFO] [stderr] [ 22%] Performing download step (git clone) for 'gromacs-populate' [INFO] [stderr] Cloning into '0f509f8ece154afdc0d43ddfee930fef9fdc0704'... [INFO] [stderr] fatal: unable to access 'https://gitlab.com/gromacs/gromacs.git/': Could not resolve host: gitlab.com [INFO] [stderr] Cloning into '0f509f8ece154afdc0d43ddfee930fef9fdc0704'... [INFO] [stderr] fatal: unable to access 'https://gitlab.com/gromacs/gromacs.git/': Could not resolve host: gitlab.com [INFO] [stderr] Cloning into '0f509f8ece154afdc0d43ddfee930fef9fdc0704'... [INFO] [stderr] fatal: unable to access 'https://gitlab.com/gromacs/gromacs.git/': Could not resolve host: gitlab.com [INFO] [stderr] -- Had to git clone more than once: [INFO] [stderr] 3 times. [INFO] [stderr] CMake Error at /opt/rustwide/target/debug/build/molar_gromacs-35ee23f4e58f4318/out/build/_deps/gromacs-subbuild/gromacs-populate-prefix/tmp/gromacs-populate-gitclone.cmake:31 (message): [INFO] [stderr] Failed to clone repository: 'https://gitlab.com/gromacs/gromacs.git' [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] gmake[2]: *** [CMakeFiles/gromacs-populate.dir/build.make:102: gromacs-populate-prefix/src/gromacs-populate-stamp/gromacs-populate-download] Error 1 [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:83: CMakeFiles/gromacs-populate.dir/all] Error 2 [INFO] [stderr] gmake: *** [Makefile:91: all] Error 2 [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.22/Modules/FetchContent.cmake:1087 (message): [INFO] [stderr] Build step for gromacs failed: 2 [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.22/Modules/FetchContent.cmake:1216:EVAL:2 (__FetchContent_directPopulate) [INFO] [stderr] /usr/share/cmake-3.22/Modules/FetchContent.cmake:1216 (cmake_language) [INFO] [stderr] CPM.cmake:967 (FetchContent_Populate) [INFO] [stderr] CPM.cmake:773 (cpm_fetch_package) [INFO] [stderr] CMakeLists.txt:31 (CPMAddPackage) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/cmake-0.1.50/src/lib.rs:1098:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55cba3741466 - std::backtrace_rs::backtrace::libunwind::trace::hcd31ff68bb8eb3c8 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/../../backtrace/src/backtrace/libunwind.rs:104:5 [INFO] [stderr] 1: 0x55cba3741466 - std::backtrace_rs::backtrace::trace_unsynchronized::h14d76bd5509bf096 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55cba3741466 - std::sys_common::backtrace::_print_fmt::hccb1d92c773f2e33 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:68:5 [INFO] [stderr] 3: 0x55cba3741466 - ::fmt::haec236aae0c71094 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:44:22 [INFO] [stderr] 4: 0x55cba376b46c - core::fmt::rt::Argument::fmt::hfe5c81d163ead061 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/fmt/rt.rs:142:9 [INFO] [stderr] 5: 0x55cba376b46c - core::fmt::write::hae70f68f90cda8d6 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/fmt/mod.rs:1120:17 [INFO] [stderr] 6: 0x55cba373e30f - std::io::Write::write_fmt::h2920683ffc23d04e [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/io/mod.rs:1846:15 [INFO] [stderr] 7: 0x55cba3741214 - std::sys_common::backtrace::_print::h5625fa16158ef797 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:47:5 [INFO] [stderr] 8: 0x55cba3741214 - std::sys_common::backtrace::print::h736502c57d395fe5 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:34:9 [INFO] [stderr] 9: 0x55cba3742a7b - std::panicking::default_hook::{{closure}}::hd092ecfc821f695b [INFO] [stderr] 10: 0x55cba37427c9 - std::panicking::default_hook::h7f251f2c2a8aa52c [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:292:9 [INFO] [stderr] 11: 0x55cba3742f1d - std::panicking::rust_panic_with_hook::h50c9145ee7057605 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:779:13 [INFO] [stderr] 12: 0x55cba3742df2 - std::panicking::begin_panic_handler::{{closure}}::h94d2e31aacd46455 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:657:13 [INFO] [stderr] 13: 0x55cba3741946 - std::sys_common::backtrace::__rust_end_short_backtrace::h38d64ea497d2de47 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/sys_common/backtrace.rs:171:18 [INFO] [stderr] 14: 0x55cba3742b24 - rust_begin_unwind [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:645:5 [INFO] [stderr] 15: 0x55cba31332f5 - core::panicking::panic_fmt::ha1515334750a7e83 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/panicking.rs:72:14 [INFO] [stderr] 16: 0x55cba36ca921 - cmake::fail::h69289738e1c7a9df [INFO] [stderr] 17: 0x55cba36ca0b6 - cmake::run::he4c47d92ebc90997 [INFO] [stderr] 18: 0x55cba36c6178 - cmake::Config::build::h099d8f59692aeba7 [INFO] [stderr] 19: 0x55cba3138ff2 - build_script_build::main::hca7a58afe5f21d89 [INFO] [stderr] 20: 0x55cba31346c3 - core::ops::function::FnOnce::call_once::h0a131678e10e6da8 [INFO] [stderr] 21: 0x55cba3133b56 - std::sys_common::backtrace::__rust_begin_short_backtrace::h5d45f9e585528ac6 [INFO] [stderr] 22: 0x55cba3134299 - std::rt::lang_start::{{closure}}::hc1108a5cfba597da [INFO] [stderr] 23: 0x55cba3739303 - core::ops::function::impls:: for &F>::call_once::hc7f8dd05f96b491f [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 24: 0x55cba3739303 - std::panicking::try::do_call::h1bd43f02a24e6751 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:552:40 [INFO] [stderr] 25: 0x55cba3739303 - std::panicking::try::hf947459dccbaf55e [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:516:19 [INFO] [stderr] 26: 0x55cba3739303 - std::panic::catch_unwind::h2c7375dd4d29a430 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panic.rs:142:14 [INFO] [stderr] 27: 0x55cba3739303 - std::rt::lang_start_internal::{{closure}}::hbe7f5719fb8f5ec0 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/rt.rs:148:48 [INFO] [stderr] 28: 0x55cba3739303 - std::panicking::try::do_call::hb71a42f44bf8deaf [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:552:40 [INFO] [stderr] 29: 0x55cba3739303 - std::panicking::try::h2f4a644426d0df1f [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panicking.rs:516:19 [INFO] [stderr] 30: 0x55cba3739303 - std::panic::catch_unwind::h81097bad143deaf0 [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/panic.rs:142:14 [INFO] [stderr] 31: 0x55cba3739303 - std::rt::lang_start_internal::h804ebd158eb3c43e [INFO] [stderr] at /rustc/ef324565d071c6d7e2477a195648549e33d6a465/library/std/src/rt.rs:148:20 [INFO] [stderr] 32: 0x55cba3134277 - std::rt::lang_start::h18f035e1451b810c [INFO] [stderr] 33: 0x55cba313a335 - main [INFO] [stderr] 34: 0x7f90f1907d90 - [INFO] [stderr] 35: 0x7f90f1907e40 - __libc_start_main [INFO] [stderr] 36: 0x55cba3133a85 - _start [INFO] [stderr] 37: 0x0 - [INFO] [stderr] warning: molar_sasa@0.1.0: Compiler version doesn't include clang or GCC: "c++" "--version" [INFO] [stderr] warning: molar_sasa@0.1.0: In file included from /opt/rustwide/target/debug/build/molar_sasa-aab560894bf29a38/out/cxxbridge/crate/molar_sasa/powersasa/power_sasa.h:35, [INFO] [stderr] warning: molar_sasa@0.1.0: from powersasa/wrapper.cpp:2: [INFO] [stderr] warning: molar_sasa@0.1.0: /opt/rustwide/target/debug/build/molar_sasa-aab560894bf29a38/out/cxxbridge/crate/molar_sasa/powersasa/power_diagram.h: In member function 'void POWER_DIAGRAM::PowerDiagram::UpdateUnused()': [INFO] [stderr] warning: molar_sasa@0.1.0: /opt/rustwide/target/debug/build/molar_sasa-aab560894bf29a38/out/cxxbridge/crate/molar_sasa/powersasa/power_diagram.h:1432:17: warning: this 'else' clause does not guard... [-Wmisleading-indentation] [INFO] [stderr] warning: molar_sasa@0.1.0: 1432 | else [INFO] [stderr] warning: molar_sasa@0.1.0: | ^~~~ [INFO] [stderr] warning: molar_sasa@0.1.0: /opt/rustwide/target/debug/build/molar_sasa-aab560894bf29a38/out/cxxbridge/crate/molar_sasa/powersasa/power_diagram.h:1444:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' [INFO] [stderr] warning: molar_sasa@0.1.0: 1444 | _nUnused=unused.size(); [INFO] [stderr] warning: molar_sasa@0.1.0: | ^~~~~~~~ [INFO] [stderr] warning: molar_sasa@0.1.0: In file included from powersasa/wrapper.cpp:2: [INFO] [stderr] warning: molar_sasa@0.1.0: /opt/rustwide/target/debug/build/molar_sasa-aab560894bf29a38/out/cxxbridge/crate/molar_sasa/powersasa/power_sasa.h: In instantiation of 'POWERSASA::PowerSasa::PowerSasa(const Coordcontainer&, const Floatcontainer&, bool, bool, bool, bool) [with Coordcontainer = SasaCoordContainer; Floatcontainer = SasaVDWContainer; PDFloat = float; PDCoord = Eigen::Matrix]': [INFO] [stderr] warning: molar_sasa@0.1.0: powersasa/wrapper.cpp:85:82: required from here [INFO] [stderr] warning: molar_sasa@0.1.0: /opt/rustwide/target/debug/build/molar_sasa-aab560894bf29a38/out/cxxbridge/crate/molar_sasa/powersasa/power_sasa.h:124:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] [INFO] [stderr] warning: molar_sasa@0.1.0: 124 | for (unsigned int i = 1; i < coords.size(); ++i) [INFO] [stderr] warning: molar_sasa@0.1.0: | ~~^~~~~~~~~~~~~~~ [INFO] running `Command { std: "docker" "inspect" "4c60f0034a4a36a7bd25b5daaddc66b9ac6b49cccf80cdc63809fb584af4e68f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4c60f0034a4a36a7bd25b5daaddc66b9ac6b49cccf80cdc63809fb584af4e68f", kill_on_drop: false }` [INFO] [stdout] 4c60f0034a4a36a7bd25b5daaddc66b9ac6b49cccf80cdc63809fb584af4e68f