[INFO] fetching crate debruijn 0.3.4... [INFO] testing debruijn-0.3.4 against master#d7bd9cd469ff6871420007f091ef52fc32d2ca99 for pr-121417 [INFO] extracting crate debruijn 0.3.4 into /workspace/builds/worker-0-tc1/source [INFO] validating manifest of crates.io crate debruijn 0.3.4 on toolchain d7bd9cd469ff6871420007f091ef52fc32d2ca99 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate debruijn 0.3.4 [INFO] finished tweaking crates.io crate debruijn 0.3.4 [INFO] tweaked toml for crates.io crate debruijn 0.3.4 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded boomphf v0.5.9 [INFO] [stderr] Downloaded pretty_assertions v0.5.1 [INFO] [stderr] Downloaded wyhash v0.5.0 [INFO] [stderr] Downloaded itertools v0.12.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9815be87c8df2eac52573426b7b8f347c4410ea8d08ed4ffe45fa8a2a307ec77 [INFO] running `Command { std: "docker" "start" "-a" "9815be87c8df2eac52573426b7b8f347c4410ea8d08ed4ffe45fa8a2a307ec77", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9815be87c8df2eac52573426b7b8f347c4410ea8d08ed4ffe45fa8a2a307ec77", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9815be87c8df2eac52573426b7b8f347c4410ea8d08ed4ffe45fa8a2a307ec77", kill_on_drop: false }` [INFO] [stdout] 9815be87c8df2eac52573426b7b8f347c4410ea8d08ed4ffe45fa8a2a307ec77 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d5973287e1609dcbbbb752038d0855b932abbc9204587c6925ca8adf5722a328 [INFO] running `Command { std: "docker" "start" "-a" "d5973287e1609dcbbbb752038d0855b932abbc9204587c6925ca8adf5722a328", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.78 [INFO] [stderr] Compiling crossbeam-utils v0.8.19 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling serde v1.0.197 [INFO] [stderr] Compiling either v1.10.0 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling serde_json v1.0.114 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling ryu v1.0.17 [INFO] [stderr] Compiling log v0.4.21 [INFO] [stderr] Compiling itoa v1.0.10 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling smallvec v1.13.1 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Compiling syn v2.0.52 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling rayon v1.9.0 [INFO] [stderr] Compiling serde_derive v1.0.197 [INFO] [stderr] Compiling boomphf v0.5.9 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: the item `serde_json` is imported redundantly [INFO] [stdout] --> src/graph.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use serde_json; [INFO] [stdout] | ^^^^^^^^^^ the item `serde_json` is already defined here [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/kmer.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 39 | use std; [INFO] [stdout] | ^^^ the item `std` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `Iterator` is imported redundantly [INFO] [stdout] --> src/msp.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::iter::Iterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] --> /rustc/d7bd9cd469ff6871420007f091ef52fc32d2ca99/library/std/src/prelude/mod.rs:115:13 [INFO] [stdout] | [INFO] [stdout] = note: the item `Iterator` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 10.13s [INFO] running `Command { std: "docker" "inspect" "d5973287e1609dcbbbb752038d0855b932abbc9204587c6925ca8adf5722a328", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d5973287e1609dcbbbb752038d0855b932abbc9204587c6925ca8adf5722a328", kill_on_drop: false }` [INFO] [stdout] d5973287e1609dcbbbb752038d0855b932abbc9204587c6925ca8adf5722a328 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2ff0b28e5107796557e1236945d07169cc63ccaf0d539cf9b3a06b9fa0dc6766 [INFO] running `Command { std: "docker" "start" "-a" "2ff0b28e5107796557e1236945d07169cc63ccaf0d539cf9b3a06b9fa0dc6766", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stdout] warning: the item `serde_json` is imported redundantly [INFO] [stdout] --> src/graph.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use serde_json; [INFO] [stdout] | ^^^^^^^^^^ the item `serde_json` is already defined here [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/kmer.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 39 | use std; [INFO] [stdout] | ^^^ the item `std` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `Iterator` is imported redundantly [INFO] [stdout] --> src/msp.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::iter::Iterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] --> /rustc/d7bd9cd469ff6871420007f091ef52fc32d2ca99/library/std/src/prelude/mod.rs:115:13 [INFO] [stdout] | [INFO] [stdout] = note: the item `Iterator` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling pretty_assertions v0.5.1 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: the item `rand` is imported redundantly [INFO] [stdout] --> src/dna_string.rs:820:16 [INFO] [stdout] | [INFO] [stdout] 820 | use rand::{self, Rng}; [INFO] [stdout] | ^^^^ the item `rand` is already defined here [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `serde_json` is imported redundantly [INFO] [stdout] --> src/graph.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use serde_json; [INFO] [stdout] | ^^^^^^^^^^ the item `serde_json` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/kmer.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 39 | use std; [INFO] [stdout] | ^^^ the item `std` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `rand` is imported redundantly [INFO] [stdout] --> src/kmer.rs:823:16 [INFO] [stdout] | [INFO] [stdout] 823 | use rand::{self, Rng, RngCore}; [INFO] [stdout] | ^^^^ the item `rand` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `Iterator` is imported redundantly [INFO] [stdout] --> src/msp.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::iter::Iterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] --> /rustc/d7bd9cd469ff6871420007f091ef52fc32d2ca99/library/std/src/prelude/mod.rs:115:13 [INFO] [stdout] | [INFO] [stdout] = note: the item `Iterator` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `DnaSlice` is imported redundantly [INFO] [stdout] --> src/msp.rs:335:9 [INFO] [stdout] | [INFO] [stdout] 331 | use super::*; [INFO] [stdout] | -------- the item `DnaSlice` is already imported here [INFO] [stdout] ... [INFO] [stdout] 335 | use crate::DnaSlice; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `Kmer` is imported redundantly [INFO] [stdout] --> src/neighbors.rs:58:9 [INFO] [stdout] | [INFO] [stdout] 56 | use super::*; [INFO] [stdout] | -------- the item `Kmer` is already imported here [INFO] [stdout] 57 | use crate::kmer::Kmer12; [INFO] [stdout] 58 | use crate::Kmer; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `rand` is imported redundantly [INFO] [stdout] --> src/test.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 10 | use rand::{self, Rng, RngCore}; [INFO] [stdout] | ^^^^ the item `rand` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `Kmer` is imported redundantly [INFO] [stdout] --> src/test.rs:144:28 [INFO] [stdout] | [INFO] [stdout] 144 | use crate::{Dir, Exts, Kmer}; [INFO] [stdout] | ^^^^ [INFO] [stdout] ... [INFO] [stdout] 157 | use super::*; [INFO] [stdout] | -------- the item `Kmer` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:394:33 [INFO] [stdout] | [INFO] [stdout] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:586:25 [INFO] [stdout] | [INFO] [stdout] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:587:25 [INFO] [stdout] | [INFO] [stdout] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 14 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 4.67s [INFO] running `Command { std: "docker" "inspect" "2ff0b28e5107796557e1236945d07169cc63ccaf0d539cf9b3a06b9fa0dc6766", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2ff0b28e5107796557e1236945d07169cc63ccaf0d539cf9b3a06b9fa0dc6766", kill_on_drop: false }` [INFO] [stdout] 2ff0b28e5107796557e1236945d07169cc63ccaf0d539cf9b3a06b9fa0dc6766 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 9f8c9c4ec2ce8aea8ed4d5fe44696e69feaddddecc56bd43f716a95544d95017 [INFO] running `Command { std: "docker" "start" "-a" "9f8c9c4ec2ce8aea8ed4d5fe44696e69feaddddecc56bd43f716a95544d95017", kill_on_drop: false }` [INFO] [stderr] warning: the item `serde_json` is imported redundantly [INFO] [stderr] --> src/graph.rs:25:5 [INFO] [stderr] | [INFO] [stderr] 25 | use serde_json; [INFO] [stderr] | ^^^^^^^^^^ the item `serde_json` is already defined here [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: the item `std` is imported redundantly [INFO] [stderr] --> src/kmer.rs:39:5 [INFO] [stderr] | [INFO] [stderr] 39 | use std; [INFO] [stderr] | ^^^ the item `std` is already defined here [INFO] [stderr] [INFO] [stderr] warning: the item `Iterator` is imported redundantly [INFO] [stderr] --> src/msp.rs:14:5 [INFO] [stderr] | [INFO] [stderr] 14 | use std::iter::Iterator; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] --> /rustc/d7bd9cd469ff6871420007f091ef52fc32d2ca99/library/std/src/prelude/mod.rs:115:13 [INFO] [stderr] | [INFO] [stderr] = note: the item `Iterator` is already defined here [INFO] [stderr] [INFO] [stderr] warning: field `2` is never read [INFO] [stderr] --> src/compression.rs:19:20 [INFO] [stderr] | [INFO] [stderr] 19 | Unique(K, Dir, Exts), [INFO] [stderr] | ------ ^^^^ [INFO] [stderr] | | [INFO] [stderr] | field in this variant [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stderr] | [INFO] [stderr] 19 | Unique(K, Dir, ()), [INFO] [stderr] | ~~ [INFO] [stderr] [INFO] [stderr] warning: field `2` is never read [INFO] [stderr] --> src/compression.rs:25:24 [INFO] [stderr] | [INFO] [stderr] 25 | Unique(usize, Dir, Exts), [INFO] [stderr] | ------ ^^^^ [INFO] [stderr] | | [INFO] [stderr] | field in this variant [INFO] [stderr] | [INFO] [stderr] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stderr] | [INFO] [stderr] 25 | Unique(usize, Dir, ()), [INFO] [stderr] | ~~ [INFO] [stderr] [INFO] [stderr] warning: the item `rand` is imported redundantly [INFO] [stderr] --> src/dna_string.rs:820:16 [INFO] [stderr] | [INFO] [stderr] 820 | use rand::{self, Rng}; [INFO] [stderr] | ^^^^ the item `rand` is already defined here [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: the item `serde_json` is imported redundantly [INFO] [stderr] --> src/graph.rs:25:5 [INFO] [stderr] | [INFO] [stderr] 25 | use serde_json; [INFO] [stderr] | ^^^^^^^^^^ the item `serde_json` is already defined here [INFO] [stderr] [INFO] [stderr] warning: the item `rand` is imported redundantly [INFO] [stderr] --> src/kmer.rs:823:16 [INFO] [stderr] | [INFO] [stderr] 823 | use rand::{self, Rng, RngCore}; [INFO] [stderr] | ^^^^ the item `rand` is already defined here [INFO] [stderr] [INFO] [stderr] warning: the item `DnaSlice` is imported redundantly [INFO] [stderr] --> src/msp.rs:335:9 [INFO] [stderr] | [INFO] [stderr] 331 | use super::*; [INFO] [stderr] | -------- the item `DnaSlice` is already imported here [INFO] [stderr] ... [INFO] [stderr] 335 | use crate::DnaSlice; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: the item `Kmer` is imported redundantly [INFO] [stderr] --> src/neighbors.rs:58:9 [INFO] [stderr] | [INFO] [stderr] 56 | use super::*; [INFO] [stderr] | -------- the item `Kmer` is already imported here [INFO] [stderr] 57 | use crate::kmer::Kmer12; [INFO] [stderr] 58 | use crate::Kmer; [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: the item `rand` is imported redundantly [INFO] [stderr] --> src/test.rs:10:12 [INFO] [stderr] | [INFO] [stderr] 10 | use rand::{self, Rng, RngCore}; [INFO] [stderr] | ^^^^ the item `rand` is already defined here [INFO] [stderr] [INFO] [stderr] warning: the item `Kmer` is imported redundantly [INFO] [stderr] --> src/test.rs:144:28 [INFO] [stderr] | [INFO] [stderr] 144 | use crate::{Dir, Exts, Kmer}; [INFO] [stderr] | ^^^^ [INFO] [stderr] ... [INFO] [stderr] 157 | use super::*; [INFO] [stderr] | -------- the item `Kmer` is already imported here [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:394:33 [INFO] [stderr] | [INFO] [stderr] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:586:25 [INFO] [stderr] | [INFO] [stderr] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:587:25 [INFO] [stderr] | [INFO] [stderr] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `debruijn` (lib) generated 5 warnings [INFO] [stderr] warning: `debruijn` (lib test) generated 14 warnings (4 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/debruijn-23ccbb8a1343a4b5) [INFO] [stdout] [INFO] [stdout] running 52 tests [INFO] [stdout] test dna_string::tests::dnastringslice_slice ... ok [INFO] [stdout] test dna_string::tests::test_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_from_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_kmers_too_short ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_for_debug ... ok [INFO] [stdout] test dna_string::tests::test_push_bytes ... ok [INFO] [stdout] test dna_string::tests::test_reverse ... ok [INFO] [stdout] test dna_string::tests::test_suffix ... ok [INFO] [stdout] test dna_string::tests::dnastringslice_get_kmer ... ok [INFO] [stdout] test dna_string::tests::test_kmers ... ok [INFO] [stdout] test dna_string::tests::test_ndiffs ... ok [INFO] [stdout] test dna_string::tests::test_prefix ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_random ... ok [INFO] [stdout] test bitops_avx2::test::test_invalid_bases ... ok [INFO] [stdout] test kmer::tests::test_kmer_10 ... ok [INFO] [stdout] test kmer::tests::test_kmer_12 ... ok [INFO] [stdout] test kmer::tests::test_kmer_15 ... ok [INFO] [stdout] test kmer::tests::test_kmer_16 ... ok [INFO] [stdout] test kmer::tests::test_kmer_14 ... ok [INFO] [stdout] test kmer::tests::test_kmer_20 ... ok [INFO] [stdout] test kmer::tests::test_kmer_4 ... ok [INFO] [stdout] test kmer::tests::test_kmer_5 ... ok [INFO] [stdout] test kmer::tests::test_kmer_24 ... ok [INFO] [stdout] test kmer::tests::test_kmer_6 ... ok [INFO] [stdout] test kmer::tests::test_kmer_8 ... ok [INFO] [stdout] test kmer::tests::test_kmer_31 ... ok [INFO] [stdout] test kmer::tests::test_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_20 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_16 ... ok [INFO] [stdout] test kmer::tests::test_kmer_48 ... ok [INFO] [stdout] test msp::tests::test1 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_24 ... ok [INFO] [stdout] test msp::tests::test_sample ... ok [INFO] [stdout] test msp::tests::test_slice ... ok [INFO] [stdout] test neighbors::test::test_hd1 ... ok [INFO] [stdout] test kmer::tests::test_kmer_64 ... ok [INFO] [stdout] test kmer::tests::test_lmer_2_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_48 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_32 ... ok [INFO] [stdout] test test::tests::degen_seq_asm ... ok [INFO] [stdout] test test::tests::degen_seq_asm_sharded ... ok [INFO] [stdout] test test::tests::simple_kmer_compress ... ok [INFO] [stdout] test test::tests::simple_path_compress ... ok [INFO] [stdout] test test::tests::simple_sharded ... ok [INFO] [stdout] test test::tests::simple_tip_clean ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_64 ... ok [INFO] [stdout] test dna_string::tests::test_slice_hamming_dist ... ok [INFO] [stdout] test test::tests::complex_kmer_compress ... ok [INFO] [stdout] test test::tests::complex_sharded ... ok [INFO] [stdout] test test::tests::complex_path_compress ... ok [INFO] [stdout] test test::tests::complex_path_compress_k31 ... ok [INFO] [stdout] test msp::tests::test_msp_scanner has been running for over 60 seconds [INFO] [stdout] test msp::tests::test_msp_scanner ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 52 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 339.31s [INFO] [stdout] [INFO] [stderr] Doc-tests debruijn [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test src/kmer.rs - kmer (line 10) ... ok [INFO] [stdout] test src/dna_string.rs - dna_string::DnaString (line 51) ... ok [INFO] [stdout] test src/dna_string.rs - dna_string (line 12) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.29s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "9f8c9c4ec2ce8aea8ed4d5fe44696e69feaddddecc56bd43f716a95544d95017", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9f8c9c4ec2ce8aea8ed4d5fe44696e69feaddddecc56bd43f716a95544d95017", kill_on_drop: false }` [INFO] [stdout] 9f8c9c4ec2ce8aea8ed4d5fe44696e69feaddddecc56bd43f716a95544d95017 [INFO] testing debruijn-0.3.4 against try#393ef12c970fbc7f294cd96c35cb76f9591bc1d6 for pr-121417 [INFO] extracting crate debruijn 0.3.4 into /workspace/builds/worker-0-tc2/source [INFO] validating manifest of crates.io crate debruijn 0.3.4 on toolchain 393ef12c970fbc7f294cd96c35cb76f9591bc1d6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+393ef12c970fbc7f294cd96c35cb76f9591bc1d6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate debruijn 0.3.4 [INFO] finished tweaking crates.io crate debruijn 0.3.4 [INFO] tweaked toml for crates.io crate debruijn 0.3.4 written to /workspace/builds/worker-0-tc2/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+393ef12c970fbc7f294cd96c35cb76f9591bc1d6" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+393ef12c970fbc7f294cd96c35cb76f9591bc1d6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+393ef12c970fbc7f294cd96c35cb76f9591bc1d6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4bca6642ebccb902e9fb8b6100f70544011788b0b31cba36b02c3fab791f1057 [INFO] running `Command { std: "docker" "start" "-a" "4bca6642ebccb902e9fb8b6100f70544011788b0b31cba36b02c3fab791f1057", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4bca6642ebccb902e9fb8b6100f70544011788b0b31cba36b02c3fab791f1057", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4bca6642ebccb902e9fb8b6100f70544011788b0b31cba36b02c3fab791f1057", kill_on_drop: false }` [INFO] [stdout] 4bca6642ebccb902e9fb8b6100f70544011788b0b31cba36b02c3fab791f1057 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+393ef12c970fbc7f294cd96c35cb76f9591bc1d6" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f1c2e031875043193d2d7a9c4ad49dbff57db92a27dae79fa129480e11b8dc7a [INFO] running `Command { std: "docker" "start" "-a" "f1c2e031875043193d2d7a9c4ad49dbff57db92a27dae79fa129480e11b8dc7a", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.78 [INFO] [stderr] Compiling crossbeam-utils v0.8.19 [INFO] [stderr] Compiling serde v1.0.197 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling either v1.10.0 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling serde_json v1.0.114 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling itoa v1.0.10 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling ryu v1.0.17 [INFO] [stderr] Compiling log v0.4.21 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling smallvec v1.13.1 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling syn v2.0.52 [INFO] [stderr] Compiling rayon v1.9.0 [INFO] [stderr] Compiling serde_derive v1.0.197 [INFO] [stderr] Compiling boomphf v0.5.9 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: the item `serde_json` is imported redundantly [INFO] [stdout] --> src/graph.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use serde_json; [INFO] [stdout] | ^^^^^^^^^^ the item `serde_json` is already defined here [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/kmer.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 39 | use std; [INFO] [stdout] | ^^^ the item `std` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `Iterator` is imported redundantly [INFO] [stdout] --> src/msp.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::iter::Iterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] --> /rustc/393ef12c970fbc7f294cd96c35cb76f9591bc1d6/library/std/src/prelude/mod.rs:115:13 [INFO] [stdout] | [INFO] [stdout] = note: the item `Iterator` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 6.13s [INFO] running `Command { std: "docker" "inspect" "f1c2e031875043193d2d7a9c4ad49dbff57db92a27dae79fa129480e11b8dc7a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f1c2e031875043193d2d7a9c4ad49dbff57db92a27dae79fa129480e11b8dc7a", kill_on_drop: false }` [INFO] [stdout] f1c2e031875043193d2d7a9c4ad49dbff57db92a27dae79fa129480e11b8dc7a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+393ef12c970fbc7f294cd96c35cb76f9591bc1d6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 15ef647675ebe78f8f48eeee6350802cbb8d1423dfc5af946a4be1861d4bef1f [INFO] running `Command { std: "docker" "start" "-a" "15ef647675ebe78f8f48eeee6350802cbb8d1423dfc5af946a4be1861d4bef1f", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stdout] warning: the item `serde_json` is imported redundantly [INFO] [stdout] --> src/graph.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use serde_json; [INFO] [stdout] | ^^^^^^^^^^ the item `serde_json` is already defined here [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/kmer.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 39 | use std; [INFO] [stdout] | ^^^ the item `std` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `Iterator` is imported redundantly [INFO] [stdout] --> src/msp.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::iter::Iterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] --> /rustc/393ef12c970fbc7f294cd96c35cb76f9591bc1d6/library/std/src/prelude/mod.rs:115:13 [INFO] [stdout] | [INFO] [stdout] = note: the item `Iterator` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling pretty_assertions v0.5.1 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling debruijn v0.3.4 (/opt/rustwide/workdir) [INFO] [stdout] warning: the item `rand` is imported redundantly [INFO] [stdout] --> src/dna_string.rs:820:16 [INFO] [stdout] | [INFO] [stdout] 820 | use rand::{self, Rng}; [INFO] [stdout] | ^^^^ the item `rand` is already defined here [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `serde_json` is imported redundantly [INFO] [stdout] --> src/graph.rs:25:5 [INFO] [stdout] | [INFO] [stdout] 25 | use serde_json; [INFO] [stdout] | ^^^^^^^^^^ the item `serde_json` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/kmer.rs:39:5 [INFO] [stdout] | [INFO] [stdout] 39 | use std; [INFO] [stdout] | ^^^ the item `std` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `rand` is imported redundantly [INFO] [stdout] --> src/kmer.rs:823:16 [INFO] [stdout] | [INFO] [stdout] 823 | use rand::{self, Rng, RngCore}; [INFO] [stdout] | ^^^^ the item `rand` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `Iterator` is imported redundantly [INFO] [stdout] --> src/msp.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::iter::Iterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] --> /rustc/393ef12c970fbc7f294cd96c35cb76f9591bc1d6/library/std/src/prelude/mod.rs:115:13 [INFO] [stdout] | [INFO] [stdout] = note: the item `Iterator` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `DnaSlice` is imported redundantly [INFO] [stdout] --> src/msp.rs:335:9 [INFO] [stdout] | [INFO] [stdout] 331 | use super::*; [INFO] [stdout] | -------- the item `DnaSlice` is already imported here [INFO] [stdout] ... [INFO] [stdout] 335 | use crate::DnaSlice; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `Kmer` is imported redundantly [INFO] [stdout] --> src/neighbors.rs:58:9 [INFO] [stdout] | [INFO] [stdout] 56 | use super::*; [INFO] [stdout] | -------- the item `Kmer` is already imported here [INFO] [stdout] 57 | use crate::kmer::Kmer12; [INFO] [stdout] 58 | use crate::Kmer; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `rand` is imported redundantly [INFO] [stdout] --> src/test.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 10 | use rand::{self, Rng, RngCore}; [INFO] [stdout] | ^^^^ the item `rand` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `Kmer` is imported redundantly [INFO] [stdout] --> src/test.rs:144:28 [INFO] [stdout] | [INFO] [stdout] 144 | use crate::{Dir, Exts, Kmer}; [INFO] [stdout] | ^^^^ [INFO] [stdout] ... [INFO] [stdout] 157 | use super::*; [INFO] [stdout] | -------- the item `Kmer` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:394:33 [INFO] [stdout] | [INFO] [stdout] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:586:25 [INFO] [stdout] | [INFO] [stdout] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/msp.rs:587:25 [INFO] [stdout] | [INFO] [stdout] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:19:20 [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 19 | Unique(K, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `2` is never read [INFO] [stdout] --> src/compression.rs:25:24 [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, Exts), [INFO] [stdout] | ------ ^^^^ [INFO] [stdout] | | [INFO] [stdout] | field in this variant [INFO] [stdout] | [INFO] [stdout] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stdout] | [INFO] [stdout] 25 | Unique(usize, Dir, ()), [INFO] [stdout] | ~~ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 14 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 3.10s [INFO] running `Command { std: "docker" "inspect" "15ef647675ebe78f8f48eeee6350802cbb8d1423dfc5af946a4be1861d4bef1f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "15ef647675ebe78f8f48eeee6350802cbb8d1423dfc5af946a4be1861d4bef1f", kill_on_drop: false }` [INFO] [stdout] 15ef647675ebe78f8f48eeee6350802cbb8d1423dfc5af946a4be1861d4bef1f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+393ef12c970fbc7f294cd96c35cb76f9591bc1d6" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 80d8ccbdad10167e33abb4a0e46fc1a2e0a12159681e0517a71caef92429f471 [INFO] running `Command { std: "docker" "start" "-a" "80d8ccbdad10167e33abb4a0e46fc1a2e0a12159681e0517a71caef92429f471", kill_on_drop: false }` [INFO] [stderr] warning: the item `serde_json` is imported redundantly [INFO] [stderr] --> src/graph.rs:25:5 [INFO] [stderr] | [INFO] [stderr] 25 | use serde_json; [INFO] [stderr] | ^^^^^^^^^^ the item `serde_json` is already defined here [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: the item `std` is imported redundantly [INFO] [stderr] --> src/kmer.rs:39:5 [INFO] [stderr] | [INFO] [stderr] 39 | use std; [INFO] [stderr] | ^^^ the item `std` is already defined here [INFO] [stderr] [INFO] [stderr] warning: the item `Iterator` is imported redundantly [INFO] [stderr] --> src/msp.rs:14:5 [INFO] [stderr] | [INFO] [stderr] 14 | use std::iter::Iterator; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] --> /rustc/393ef12c970fbc7f294cd96c35cb76f9591bc1d6/library/std/src/prelude/mod.rs:115:13 [INFO] [stderr] | [INFO] [stderr] = note: the item `Iterator` is already defined here [INFO] [stderr] [INFO] [stderr] warning: field `2` is never read [INFO] [stderr] --> src/compression.rs:19:20 [INFO] [stderr] | [INFO] [stderr] 19 | Unique(K, Dir, Exts), [INFO] [stderr] | ------ ^^^^ [INFO] [stderr] | | [INFO] [stderr] | field in this variant [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stderr] | [INFO] [stderr] 19 | Unique(K, Dir, ()), [INFO] [stderr] | ~~ [INFO] [stderr] [INFO] [stderr] warning: field `2` is never read [INFO] [stderr] --> src/compression.rs:25:24 [INFO] [stderr] | [INFO] [stderr] 25 | Unique(usize, Dir, Exts), [INFO] [stderr] | ------ ^^^^ [INFO] [stderr] | | [INFO] [stderr] | field in this variant [INFO] [stderr] | [INFO] [stderr] help: consider changing the field to be of unit type to suppress this warning while preserving the field numbering, or remove the field [INFO] [stderr] | [INFO] [stderr] 25 | Unique(usize, Dir, ()), [INFO] [stderr] | ~~ [INFO] [stderr] [INFO] [stderr] warning: the item `rand` is imported redundantly [INFO] [stderr] --> src/dna_string.rs:820:16 [INFO] [stderr] | [INFO] [stderr] 820 | use rand::{self, Rng}; [INFO] [stderr] | ^^^^ the item `rand` is already defined here [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: the item `serde_json` is imported redundantly [INFO] [stderr] --> src/graph.rs:25:5 [INFO] [stderr] | [INFO] [stderr] 25 | use serde_json; [INFO] [stderr] | ^^^^^^^^^^ the item `serde_json` is already defined here [INFO] [stderr] [INFO] [stderr] warning: the item `rand` is imported redundantly [INFO] [stderr] --> src/kmer.rs:823:16 [INFO] [stderr] | [INFO] [stderr] 823 | use rand::{self, Rng, RngCore}; [INFO] [stderr] | ^^^^ the item `rand` is already defined here [INFO] [stderr] [INFO] [stderr] warning: the item `DnaSlice` is imported redundantly [INFO] [stderr] --> src/msp.rs:335:9 [INFO] [stderr] | [INFO] [stderr] 331 | use super::*; [INFO] [stderr] | -------- the item `DnaSlice` is already imported here [INFO] [stderr] ... [INFO] [stderr] 335 | use crate::DnaSlice; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: the item `Kmer` is imported redundantly [INFO] [stderr] --> src/neighbors.rs:58:9 [INFO] [stderr] | [INFO] [stderr] 56 | use super::*; [INFO] [stderr] | -------- the item `Kmer` is already imported here [INFO] [stderr] 57 | use crate::kmer::Kmer12; [INFO] [stderr] 58 | use crate::Kmer; [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: the item `rand` is imported redundantly [INFO] [stderr] --> src/test.rs:10:12 [INFO] [stderr] | [INFO] [stderr] 10 | use rand::{self, Rng, RngCore}; [INFO] [stderr] | ^^^^ the item `rand` is already defined here [INFO] [stderr] [INFO] [stderr] warning: the item `Kmer` is imported redundantly [INFO] [stderr] --> src/test.rs:144:28 [INFO] [stderr] | [INFO] [stderr] 144 | use crate::{Dir, Exts, Kmer}; [INFO] [stderr] | ^^^^ [INFO] [stderr] ... [INFO] [stderr] 157 | use super::*; [INFO] [stderr] | -------- the item `Kmer` is already imported here [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:394:33 [INFO] [stderr] | [INFO] [stderr] 394 | let slices = super::simple_scan::<_, Kmer8>(k, &DnaSlice(&dna), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:586:25 [INFO] [stderr] | [INFO] [stderr] 586 | let s1 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v1), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated function `msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stderr] --> src/msp.rs:587:25 [INFO] [stderr] | [INFO] [stderr] 587 | let s2 = super::simple_scan::<_, Kmer5>(35, &DnaSlice(&mut &v2), &permutation, true); [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `debruijn` (lib) generated 5 warnings [INFO] [stderr] warning: `debruijn` (lib test) generated 14 warnings (4 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.02s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/debruijn-23ccbb8a1343a4b5) [INFO] [stdout] [INFO] [stdout] running 52 tests [INFO] [stdout] test dna_string::tests::dnastringslice_get_kmer ... ok [INFO] [stdout] test dna_string::tests::dnastringslice_slice ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_for_debug ... ok [INFO] [stdout] test dna_string::tests::test_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_ndiffs ... ok [INFO] [stdout] test dna_string::tests::test_from_dna_string ... ok [INFO] [stdout] test dna_string::tests::test_prefix ... ok [INFO] [stdout] test dna_string::tests::test_push_bytes ... ok [INFO] [stdout] test dna_string::tests::test_reverse ... ok [INFO] [stdout] test dna_string::tests::test_kmers_too_short ... ok [INFO] [stdout] test dna_string::tests::test_suffix ... ok [INFO] [stdout] test dna_string::tests::test_kmers ... ok [INFO] [stdout] test bitops_avx2::test::test_convert_bytes_random ... ok [INFO] [stdout] test bitops_avx2::test::test_invalid_bases ... ok [INFO] [stdout] test kmer::tests::test_kmer_10 ... ok [INFO] [stdout] test kmer::tests::test_kmer_12 ... ok [INFO] [stdout] test kmer::tests::test_kmer_14 ... ok [INFO] [stdout] test kmer::tests::test_kmer_15 ... ok [INFO] [stdout] test kmer::tests::test_kmer_16 ... ok [INFO] [stdout] test kmer::tests::test_kmer_20 ... ok [INFO] [stdout] test kmer::tests::test_kmer_4 ... ok [INFO] [stdout] test kmer::tests::test_kmer_5 ... ok [INFO] [stdout] test kmer::tests::test_kmer_24 ... ok [INFO] [stdout] test kmer::tests::test_kmer_6 ... ok [INFO] [stdout] test kmer::tests::test_kmer_8 ... ok [INFO] [stdout] test kmer::tests::test_kmer_31 ... ok [INFO] [stdout] test kmer::tests::test_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_16 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_20 ... ok [INFO] [stdout] test kmer::tests::test_lmer_1_kmer_24 ... ok [INFO] [stdout] test msp::tests::test1 ... ok [INFO] [stdout] test kmer::tests::test_kmer_48 ... ok [INFO] [stdout] test msp::tests::test_sample ... ok [INFO] [stdout] test msp::tests::test_slice ... ok [INFO] [stdout] test neighbors::test::test_hd1 ... ok [INFO] [stdout] test kmer::tests::test_kmer_64 ... ok [INFO] [stdout] test kmer::tests::test_lmer_2_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_32 ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_64 ... ok [INFO] [stdout] test test::tests::degen_seq_asm ... ok [INFO] [stdout] test test::tests::degen_seq_asm_sharded ... ok [INFO] [stdout] test test::tests::simple_kmer_compress ... ok [INFO] [stdout] test test::tests::simple_path_compress ... ok [INFO] [stdout] test test::tests::simple_sharded ... ok [INFO] [stdout] test test::tests::simple_tip_clean ... ok [INFO] [stdout] test kmer::tests::test_lmer_3_kmer_48 ... ok [INFO] [stdout] test dna_string::tests::test_slice_hamming_dist ... ok [INFO] [stdout] test test::tests::complex_sharded ... ok [INFO] [stdout] test test::tests::complex_path_compress ... ok [INFO] [stdout] test test::tests::complex_kmer_compress ... ok [INFO] [stdout] test test::tests::complex_path_compress_k31 ... ok [INFO] [stdout] test msp::tests::test_msp_scanner has been running for over 60 seconds [ERROR] error running command: no output for 300 seconds [INFO] running `Command { std: "docker" "inspect" "80d8ccbdad10167e33abb4a0e46fc1a2e0a12159681e0517a71caef92429f471", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "80d8ccbdad10167e33abb4a0e46fc1a2e0a12159681e0517a71caef92429f471", kill_on_drop: false }` [INFO] [stdout] 80d8ccbdad10167e33abb4a0e46fc1a2e0a12159681e0517a71caef92429f471