[INFO] fetching crate chiral-apps 0.1.3... [INFO] testing chiral-apps-0.1.3 against master#d7bd9cd469ff6871420007f091ef52fc32d2ca99 for pr-121417 [INFO] extracting crate chiral-apps 0.1.3 into /workspace/builds/worker-1-tc1/source [INFO] validating manifest of crates.io crate chiral-apps 0.1.3 on toolchain d7bd9cd469ff6871420007f091ef52fc32d2ca99 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate chiral-apps 0.1.3 [INFO] finished tweaking crates.io crate chiral-apps 0.1.3 [INFO] tweaked toml for crates.io crate chiral-apps 0.1.3 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded anstyle-query v1.0.2 [INFO] [stderr] Downloaded strum v0.24.1 [INFO] [stderr] Downloaded strum_macros v0.24.3 [INFO] [stderr] Downloaded link-cplusplus v1.0.9 [INFO] [stderr] Downloaded chiral-common v0.1.4 [INFO] [stderr] Downloaded clap_derive v4.5.0 [INFO] [stderr] Downloaded nanoid v0.4.0 [INFO] [stderr] Downloaded number_prefix v0.4.0 [INFO] [stderr] Downloaded clap_builder v4.5.1 [INFO] [stderr] Downloaded scratch v1.0.7 [INFO] [stderr] Downloaded anstream v0.6.13 [INFO] [stderr] Downloaded anstyle-parse v0.2.3 [INFO] [stderr] Downloaded cxx-build v1.0.118 [INFO] [stderr] Downloaded clap v4.5.1 [INFO] [stderr] Downloaded cxx v1.0.118 [INFO] [stderr] Downloaded portable-atomic v1.6.0 [INFO] [stderr] Downloaded cxxbridge-macro v1.0.118 [INFO] [stderr] Downloaded console v0.15.8 [INFO] [stderr] Downloaded indicatif v0.17.8 [INFO] [stderr] Downloaded clap_lex v0.7.0 [INFO] [stderr] Downloaded anstyle-wincon v3.0.2 [INFO] [stderr] Downloaded cxxbridge-flags v1.0.118 [INFO] [stderr] Downloaded permutation v0.4.1 [INFO] [stderr] Downloaded strsim v0.11.0 [INFO] [stderr] Downloaded chiral-derive v0.1.4 [INFO] [stderr] Downloaded fs_extra v1.3.0 [INFO] [stderr] Downloaded anstyle v1.0.6 [INFO] [stderr] Downloaded openbabel v0.5.3 [INFO] [stderr] Downloaded openbabel-sys v0.5.3+openbabel-3.1.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7774288dcd70d0ea0aa192c63ca6681845304b482a7ffc5c7b40d5eca7049cc5 [INFO] running `Command { std: "docker" "start" "-a" "7774288dcd70d0ea0aa192c63ca6681845304b482a7ffc5c7b40d5eca7049cc5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7774288dcd70d0ea0aa192c63ca6681845304b482a7ffc5c7b40d5eca7049cc5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7774288dcd70d0ea0aa192c63ca6681845304b482a7ffc5c7b40d5eca7049cc5", kill_on_drop: false }` [INFO] [stdout] 7774288dcd70d0ea0aa192c63ca6681845304b482a7ffc5c7b40d5eca7049cc5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 90ee975a231704f464d13b1faf06f9c2ae51d34bba2427b6abaf8a103f1c15f0 [INFO] running `Command { std: "docker" "start" "-a" "90ee975a231704f464d13b1faf06f9c2ae51d34bba2427b6abaf8a103f1c15f0", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.78 [INFO] [stderr] Compiling cc v1.0.88 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling scratch v1.0.7 [INFO] [stderr] Compiling serde v1.0.197 [INFO] [stderr] Compiling rustversion v1.0.14 [INFO] [stderr] Compiling cxxbridge-flags v1.0.118 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling once_cell v1.19.0 [INFO] [stderr] Compiling utf8parse v0.2.1 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling portable-atomic v1.6.0 [INFO] [stderr] Compiling colorchoice v1.0.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.17 [INFO] [stderr] Compiling getrandom v0.2.12 [INFO] [stderr] Compiling anstyle-parse v0.2.3 [INFO] [stderr] Compiling anstyle-query v1.0.2 [INFO] [stderr] Compiling crc32fast v1.4.0 [INFO] [stderr] Compiling anstyle v1.0.6 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling fs_extra v1.3.0 [INFO] [stderr] Compiling anyhow v1.0.80 [INFO] [stderr] Compiling codespan-reporting v0.11.1 [INFO] [stderr] Compiling anstream v0.6.13 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling serde_json v1.0.114 [INFO] [stderr] Compiling strsim v0.11.0 [INFO] [stderr] Compiling clap_lex v0.7.0 [INFO] [stderr] Compiling miniz_oxide v0.7.2 [INFO] [stderr] Compiling console v0.15.8 [INFO] [stderr] Compiling ryu v1.0.17 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling clap_builder v4.5.1 [INFO] [stderr] Compiling itoa v1.0.10 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling iana-time-zone v0.1.60 [INFO] [stderr] Compiling home v0.5.9 [INFO] [stderr] Compiling permutation v0.4.1 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Compiling flate2 v1.0.28 [INFO] [stderr] Compiling syn v2.0.52 [INFO] [stderr] Compiling indicatif v0.17.8 [INFO] [stderr] Compiling link-cplusplus v1.0.9 [INFO] [stderr] Compiling cxx v1.0.118 [INFO] [stderr] Compiling nanoid v0.4.0 [INFO] [stderr] Compiling cxx-build v1.0.118 [INFO] [stderr] Compiling serde_derive v1.0.197 [INFO] [stderr] Compiling cxxbridge-macro v1.0.118 [INFO] [stderr] Compiling thiserror-impl v1.0.57 [INFO] [stderr] Compiling clap_derive v4.5.0 [INFO] [stderr] Compiling strum_macros v0.24.3 [INFO] [stderr] Compiling chiral-derive v0.1.4 [INFO] [stderr] Compiling thiserror v1.0.57 [INFO] [stderr] Compiling openbabel-sys v0.5.3+openbabel-3.1.1 [INFO] [stderr] Compiling clap v4.5.1 [INFO] [stderr] Compiling strum v0.24.1 [INFO] [stderr] Compiling chrono v0.4.34 [INFO] [stderr] Compiling chiral-common v0.1.4 [INFO] [stderr] Compiling openbabel v0.5.3 [INFO] [stderr] Compiling chiral-apps v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 26s [INFO] running `Command { std: "docker" "inspect" "90ee975a231704f464d13b1faf06f9c2ae51d34bba2427b6abaf8a103f1c15f0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "90ee975a231704f464d13b1faf06f9c2ae51d34bba2427b6abaf8a103f1c15f0", kill_on_drop: false }` [INFO] [stdout] 90ee975a231704f464d13b1faf06f9c2ae51d34bba2427b6abaf8a103f1c15f0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9c62dfe9520e9a05c362bf721d65328f03a93d8e0313022b5b8a1b86b3968dbe [INFO] running `Command { std: "docker" "start" "-a" "9c62dfe9520e9a05c362bf721d65328f03a93d8e0313022b5b8a1b86b3968dbe", kill_on_drop: false }` [INFO] [stderr] Compiling chiral-apps v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 3.88s [INFO] running `Command { std: "docker" "inspect" "9c62dfe9520e9a05c362bf721d65328f03a93d8e0313022b5b8a1b86b3968dbe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9c62dfe9520e9a05c362bf721d65328f03a93d8e0313022b5b8a1b86b3968dbe", kill_on_drop: false }` [INFO] [stdout] 9c62dfe9520e9a05c362bf721d65328f03a93d8e0313022b5b8a1b86b3968dbe [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+d7bd9cd469ff6871420007f091ef52fc32d2ca99" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] ed3a071ab2142f92f7c899fe9cf4178618a36a524c6f0aee3f528401e2183bf9 [INFO] running `Command { std: "docker" "start" "-a" "ed3a071ab2142f92f7c899fe9cf4178618a36a524c6f0aee3f528401e2183bf9", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/chiral_apps-4c73e0a5d8acb3b1) [INFO] [stdout] [INFO] [stdout] running 3 tests [INFO] [stdout] test chem::openbabel::substructure::tests::test_matcher ... ok [INFO] [stdout] test chem::openbabel::substructure::tests::test_op ... ok [INFO] [stdout] test chem::openbabel::similarity::tests::test_op ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests chiral-apps [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "ed3a071ab2142f92f7c899fe9cf4178618a36a524c6f0aee3f528401e2183bf9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ed3a071ab2142f92f7c899fe9cf4178618a36a524c6f0aee3f528401e2183bf9", kill_on_drop: false }` [INFO] [stdout] ed3a071ab2142f92f7c899fe9cf4178618a36a524c6f0aee3f528401e2183bf9